Wall clock time and date at job start Tue Mar 31 2020 11:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.46938 * 120.00335 * 8 6 4 11 11 H 1.48505 * 109.46930 * 240.00323 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 S 1.81398 * 109.47220 * 184.99898 * 16 13 12 18 18 C 1.76199 * 103.00057 * 180.02562 * 17 16 13 19 19 C 1.39184 * 119.69892 * 179.72797 * 18 17 16 20 20 C 1.38270 * 119.11005 * 179.75313 * 19 18 17 21 21 C 1.39000 * 118.49612 * 0.51527 * 20 19 18 22 22 Cl 1.73606 * 120.33962 * 179.75440 * 21 20 19 23 23 C 1.38129 * 119.31637 * 359.72626 * 21 20 19 24 24 N 1.31971 * 120.84239 * 0.02562 * 23 21 20 25 25 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 26 26 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 27 27 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 28 28 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 29 29 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 30 30 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 32 32 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 33 33 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 34 34 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 35 35 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 36 36 H 1.08001 * 120.44657 * 0.02562 * 19 18 17 37 37 H 1.07999 * 120.75512 * 180.23982 * 20 19 18 38 38 H 1.08001 * 119.57431 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.8136 3.2450 -3.9905 10 1 0.7540 5.3882 -2.8582 11 1 2.8230 4.5950 -3.8433 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 16 5.8358 -2.0195 1.9091 18 6 6.3193 -2.8117 3.4069 19 6 7.6506 -3.1692 3.5993 20 6 8.0175 -3.7856 4.7813 21 6 7.0346 -4.0351 5.7320 22 17 7.4410 -4.8123 7.2303 23 6 5.7314 -3.6579 5.4726 24 7 5.4116 -3.0664 4.3370 25 1 -0.3634 0.4290 -0.9338 26 1 -0.3634 0.5940 0.8385 27 1 -0.3632 -1.0233 0.0953 28 1 1.5610 1.9274 0.8309 29 1 3.0796 1.3445 0.1083 30 1 2.9861 4.9182 -0.7768 31 1 1.8943 -0.1776 2.0496 32 1 1.4350 -1.6951 1.2405 33 1 3.1332 -2.7955 -0.1323 34 1 3.8797 -1.1513 3.0120 35 1 3.5677 -2.7404 2.2732 36 1 8.3880 -2.9639 2.8373 37 1 9.0437 -4.0708 4.9601 38 1 4.9645 -3.8493 6.2085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414107785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:54 Heat of formation + Delta-G solvation = -19.613069 kcal Electronic energy + Delta-G solvation = -20832.649527 eV Core-core repulsion = 17441.251815 eV Total energy + Delta-G solvation = -3391.397712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36809 -38.00809 -36.99875 -35.53666 -32.94438 -32.49971 -31.45169 -31.02302 -27.46719 -26.78930 -24.21254 -24.15857 -23.60480 -21.86208 -20.13730 -18.46129 -17.04624 -16.97482 -16.53850 -16.08006 -15.61903 -15.08088 -14.81950 -14.77679 -14.65427 -14.28156 -13.78780 -13.55928 -13.35891 -12.88386 -12.67280 -12.45039 -12.18259 -11.94346 -11.62423 -11.44651 -11.22900 -11.10188 -10.93570 -10.63401 -10.50082 -10.30437 -10.28344 -10.02774 -9.91654 -9.82762 -9.71511 -9.14378 -8.41932 -7.68817 -7.24583 -6.01483 -4.01999 0.42365 0.74766 1.21283 1.68460 2.15167 3.16942 3.32745 3.40079 3.45282 4.09100 4.32083 4.41237 4.53158 4.55582 4.58603 4.69648 5.08413 5.20279 5.28659 5.35204 5.38693 5.42708 5.47202 5.62263 5.66328 5.94888 5.98886 6.05372 6.32386 6.34698 6.69987 7.24159 7.26497 7.29619 7.79550 7.98339 8.07304 8.18257 8.54011 9.05429 9.62037 11.09675 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.002319 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.784992 B =12071.212058 C =12395.274245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.190 3.810 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.033 3.967 13 C 0.126 3.874 14 H 0.115 0.885 15 O -0.535 6.535 16 C -0.133 4.133 17 S -0.025 6.025 18 C 0.119 3.881 19 C -0.143 4.143 20 C -0.047 4.047 21 C -0.106 4.106 22 Cl -0.059 7.059 23 C 0.133 3.867 24 N -0.479 5.479 25 H 0.073 0.927 26 H 0.012 0.988 27 H 0.043 0.957 28 H -0.010 1.010 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.365 0.635 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.619 -18.096 13.669 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.256 5.256 3 C 0.065 3.935 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.098 4.098 13 C 0.065 3.935 14 H 0.132 0.868 15 O -0.338 6.338 16 C -0.283 4.283 17 S 0.219 5.781 18 C -0.130 4.130 19 C -0.169 4.169 20 C -0.075 4.075 21 C -0.139 4.139 22 Cl -0.030 7.030 23 C -0.028 4.028 24 N -0.192 5.192 25 H 0.092 0.908 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.008 0.992 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.211 0.789 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.963 -17.092 11.950 22.700 hybrid contribution -0.616 -0.125 1.813 1.919 sum 8.347 -17.217 13.764 23.570 Atomic orbital electron populations 1.22187 0.88572 0.98668 1.01293 1.62046 1.06725 1.17917 1.38937 1.19822 0.95500 0.81409 0.96735 1.21175 1.34615 0.96786 1.01645 0.91793 1.24992 0.95337 0.97386 0.96997 1.69963 1.38537 1.11406 1.34033 0.86442 0.78167 0.79243 0.83588 1.19649 1.21193 1.20973 1.22626 0.94646 0.98581 0.93934 1.21761 0.95596 0.93534 0.82641 0.86768 1.86717 1.76285 1.30682 1.40124 1.24487 0.93711 1.05727 1.04335 1.86133 1.09264 1.69615 1.13051 1.23650 0.92674 0.97896 0.98752 1.21694 0.95813 1.00916 0.98518 1.21429 0.99667 0.94888 0.91547 1.21925 0.96201 1.04955 0.90852 1.98380 1.93926 1.79299 1.31413 1.22741 0.93577 0.92467 0.94059 1.68313 1.35093 1.14286 1.01519 0.90828 0.96901 0.93854 0.99228 0.95062 0.93003 0.94785 0.91727 0.78941 0.88115 0.88834 0.83266 0.83363 0.81694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.32 60.07 0.56 1.35 16 2 N -0.53 -11.30 4.66 -244.37 -1.14 -12.44 16 3 C 0.19 4.93 4.57 -4.97 -0.02 4.91 16 4 C -0.50 -14.25 8.58 -34.44 -0.30 -14.55 16 5 H 0.06 1.81 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.03 0.56 4.61 -3.83 -0.02 0.54 16 13 C 0.13 2.01 3.02 -26.73 -0.08 1.93 16 14 H 0.11 2.20 6.46 -51.93 -0.34 1.86 16 15 O -0.53 -8.65 13.04 -35.23 -0.46 -9.11 16 16 C -0.13 -1.72 4.86 37.16 0.18 -1.54 16 17 S -0.03 -0.32 21.69 -107.50 -2.33 -2.65 16 18 C 0.12 1.39 7.00 -16.94 -0.12 1.27 16 19 C -0.14 -1.34 9.84 -39.22 -0.39 -1.73 16 20 C -0.05 -0.38 9.97 -39.29 -0.39 -0.77 16 21 C -0.11 -0.93 6.34 -39.34 -0.25 -1.18 16 22 Cl -0.06 -0.45 28.98 -51.86 -1.50 -1.95 16 23 C 0.13 1.28 10.97 -17.53 -0.19 1.09 16 24 N -0.48 -5.65 9.43 -12.09 -0.11 -5.77 16 25 H 0.07 1.50 7.02 -51.93 -0.36 1.14 16 26 H 0.01 0.24 8.07 -51.93 -0.42 -0.18 16 27 H 0.04 0.68 7.88 -51.93 -0.41 0.28 16 28 H -0.01 -0.28 8.07 -51.93 -0.42 -0.70 16 29 H 0.03 0.86 6.34 -51.93 -0.33 0.53 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 32 H 0.06 0.91 7.82 -51.93 -0.41 0.51 16 33 H 0.36 4.38 9.05 45.56 0.41 4.79 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -31.92 351.10 -9.96 -41.88 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.31 Total: 1.24 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.11 Total: -7.23 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.52 Total: -44.29 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.46 Total: -9.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.33 Total: -2.65 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.92 -9.96 -41.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414107785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.269 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds