Wall clock time and date at job start Tue Mar 31 2020 11:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.46938 * 120.00335 * 8 6 4 11 11 H 1.48505 * 109.46930 * 240.00323 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 S 1.81398 * 109.47220 * 184.99898 * 16 13 12 18 18 C 1.76199 * 103.00057 * 180.02562 * 17 16 13 19 19 C 1.39184 * 119.69892 * 179.72797 * 18 17 16 20 20 C 1.38270 * 119.11005 * 179.75313 * 19 18 17 21 21 C 1.39000 * 118.49612 * 0.51527 * 20 19 18 22 22 Cl 1.73606 * 120.33962 * 179.75440 * 21 20 19 23 23 C 1.38129 * 119.31637 * 359.72626 * 21 20 19 24 24 N 1.31971 * 120.84239 * 0.02562 * 23 21 20 25 25 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 26 26 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 27 27 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 28 28 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 29 29 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 30 30 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 32 32 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 33 33 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 34 34 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 35 35 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 36 36 H 1.08001 * 120.44657 * 0.02562 * 19 18 17 37 37 H 1.07999 * 120.75512 * 180.23982 * 20 19 18 38 38 H 1.08001 * 119.57431 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.8136 3.2450 -3.9905 10 1 0.7540 5.3882 -2.8582 11 1 2.8230 4.5950 -3.8433 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 16 5.8358 -2.0195 1.9091 18 6 6.3193 -2.8117 3.4069 19 6 7.6506 -3.1692 3.5993 20 6 8.0175 -3.7856 4.7813 21 6 7.0346 -4.0351 5.7320 22 17 7.4410 -4.8123 7.2303 23 6 5.7314 -3.6579 5.4726 24 7 5.4116 -3.0664 4.3370 25 1 -0.3634 0.4290 -0.9338 26 1 -0.3634 0.5940 0.8385 27 1 -0.3632 -1.0233 0.0953 28 1 1.5610 1.9274 0.8309 29 1 3.0796 1.3445 0.1083 30 1 2.9861 4.9182 -0.7768 31 1 1.8943 -0.1776 2.0496 32 1 1.4350 -1.6951 1.2405 33 1 3.1332 -2.7955 -0.1323 34 1 3.8797 -1.1513 3.0120 35 1 3.5677 -2.7404 2.2732 36 1 8.3880 -2.9639 2.8373 37 1 9.0437 -4.0708 4.9601 38 1 4.9645 -3.8493 6.2085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414107785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:54 Heat of formation + Delta-G solvation = -42.348541 kcal Electronic energy + Delta-G solvation = -20833.635411 eV Core-core repulsion = 17441.251815 eV Total energy + Delta-G solvation = -3392.383596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11342 -39.43334 -37.65796 -37.11339 -34.61155 -33.67913 -32.33879 -32.14008 -29.46451 -28.18069 -25.67224 -24.94632 -24.77457 -23.27117 -21.78317 -19.27928 -18.62724 -17.84980 -17.75861 -17.30017 -16.96812 -16.57530 -16.12364 -16.03524 -15.61870 -15.56837 -15.14637 -14.84664 -14.42292 -14.09580 -13.98413 -13.65723 -13.36956 -13.16922 -13.06568 -12.89911 -12.61912 -12.55204 -12.46331 -12.28905 -12.22498 -11.75116 -11.37232 -11.30974 -11.01551 -10.95277 -10.76896 -10.67262 -10.60581 -8.97912 -8.62692 -8.20245 -6.29381 -0.32769 0.04968 0.29749 0.97105 1.21000 1.40222 1.41547 1.54910 2.40734 2.42348 3.11323 3.16416 3.37981 3.52383 3.68909 3.82433 3.83658 3.87681 3.94495 4.17074 4.30200 4.53407 4.55350 4.57430 4.67344 4.69218 4.77366 4.82544 4.99115 5.08809 5.19240 5.26602 5.30572 5.65713 6.06163 6.32400 6.49804 6.62123 6.86457 6.96136 7.39990 8.91159 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.002319 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.784992 B =12071.212058 C =12395.274245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.206 3.794 4 C -0.521 4.521 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.033 3.967 13 C 0.137 3.863 14 H 0.072 0.928 15 O -0.552 6.552 16 C -0.114 4.114 17 S -0.058 6.058 18 C 0.102 3.898 19 C -0.142 4.142 20 C -0.042 4.042 21 C -0.103 4.103 22 Cl -0.046 7.046 23 C 0.123 3.877 24 N -0.499 5.499 25 H 0.055 0.945 26 H 0.008 0.992 27 H 0.084 0.916 28 H -0.039 1.039 29 H 0.006 0.994 30 H 0.264 0.736 31 H 0.031 0.969 32 H 0.103 0.897 33 H 0.384 0.616 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.165 0.835 37 H 0.178 0.822 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.716 -19.855 14.102 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.267 5.267 3 C 0.080 3.920 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.205 1.205 12 C -0.097 4.097 13 C 0.075 3.925 14 H 0.090 0.910 15 O -0.358 6.358 16 C -0.264 4.264 17 S 0.185 5.815 18 C -0.146 4.146 19 C -0.169 4.169 20 C -0.069 4.069 21 C -0.136 4.136 22 Cl -0.017 7.017 23 C -0.039 4.039 24 N -0.212 5.212 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.103 0.897 28 H -0.022 1.022 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.121 0.879 33 H 0.233 0.767 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.183 0.817 37 H 0.196 0.804 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.045 -18.888 12.400 24.338 hybrid contribution -0.590 0.298 1.817 1.933 sum 8.455 -18.591 14.217 24.884 Atomic orbital electron populations 1.22212 0.87158 1.01021 1.00171 1.61933 1.08120 1.15193 1.41447 1.19439 0.93889 0.83826 0.94828 1.21500 1.34614 0.97389 1.02437 0.92045 1.25917 0.95104 0.98140 1.00677 1.70087 1.39491 1.11857 1.36115 0.85348 0.78067 0.78207 0.79089 1.18750 1.20306 1.20474 1.22748 0.95535 0.99293 0.92111 1.21409 0.94700 0.92494 0.83859 0.91000 1.86670 1.76886 1.31834 1.40419 1.24194 0.93881 1.06049 1.02242 1.86152 1.09391 1.70869 1.15085 1.23541 0.93651 0.99117 0.98256 1.21923 0.95162 1.00385 0.99419 1.21770 1.00942 0.93670 0.90559 1.22037 0.96087 1.04143 0.91329 1.98390 1.93788 1.78949 1.30593 1.23057 0.94674 0.92320 0.93803 1.68227 1.35735 1.15022 1.02255 0.92632 0.97308 0.89721 1.02181 0.97585 0.92736 0.95086 0.87899 0.76711 0.88565 0.86960 0.81730 0.80439 0.79971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.32 127.69 1.19 2.78 16 2 N -0.54 -23.21 4.66 -927.06 -4.32 -27.53 16 3 C 0.21 11.15 4.57 85.56 0.39 11.54 16 4 C -0.52 -30.21 8.58 25.60 0.22 -29.99 16 5 H 0.06 3.51 7.10 -2.92 -0.02 3.49 16 6 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 7 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 8 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 9 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 C 0.03 1.11 4.61 86.30 0.40 1.50 16 13 C 0.14 4.44 3.02 30.59 0.09 4.53 16 14 H 0.07 2.96 6.46 -2.39 -0.02 2.95 16 15 O -0.55 -17.71 13.04 -148.98 -1.94 -19.65 16 16 C -0.11 -2.94 4.86 71.98 0.35 -2.59 16 17 S -0.06 -1.53 21.69 -56.49 -1.23 -2.75 16 18 C 0.10 2.33 7.00 84.83 0.59 2.92 16 19 C -0.14 -2.46 9.84 22.50 0.22 -2.24 16 20 C -0.04 -0.57 9.97 22.46 0.22 -0.35 16 21 C -0.10 -1.58 6.34 22.43 0.14 -1.44 16 22 Cl -0.05 -0.60 28.98 -2.72 -0.08 -0.68 16 23 C 0.12 2.18 10.97 84.65 0.93 3.11 16 24 N -0.50 -11.31 9.43 -192.16 -1.81 -13.12 16 25 H 0.05 2.25 7.02 -2.39 -0.02 2.24 16 26 H 0.01 0.32 8.07 -2.39 -0.02 0.30 16 27 H 0.08 2.45 7.88 -2.39 -0.02 2.43 16 28 H -0.04 -2.30 8.07 -2.39 -0.02 -2.32 16 29 H 0.01 0.36 6.34 -2.39 -0.02 0.34 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.03 1.06 8.05 -2.39 -0.02 1.04 16 32 H 0.10 2.62 7.82 -2.39 -0.02 2.60 16 33 H 0.38 8.63 9.05 -74.06 -0.67 7.96 16 34 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -70.52 351.10 -1.44 -71.96 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.41 Total: 11.24 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 5.21 Total: -9.81 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -5.84 Total: -97.57 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.94 Total: -19.65 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -1.23 Total: -2.75 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -70.52 -1.44 -71.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414107785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.616 kcal (2) G-P(sol) polarization free energy of solvation -70.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds