Wall clock time and date at job start Tue Mar 31 2020 11:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.50701 * 109.46992 * 269.99655 * 3 2 1 5 5 C 1.33351 * 125.18473 * 89.72129 * 4 3 2 6 6 C 1.38477 * 114.92552 * 179.79577 * 5 4 3 7 7 C 1.33499 * 114.88509 * 0.49482 * 6 5 4 8 8 Cl 1.73600 * 125.21136 * 179.76034 * 7 6 5 9 9 S 1.75869 * 125.19012 * 270.02349 * 4 3 2 10 10 C 1.34781 * 119.99832 * 179.97438 * 2 1 3 11 11 O 1.21281 * 120.00142 * 179.97438 * 10 2 1 12 12 C 1.50703 * 120.00021 * 0.02562 * 10 2 1 13 13 H 1.09003 * 109.46807 * 320.00164 * 12 10 2 14 14 N 1.46902 * 109.47159 * 199.99876 * 12 10 2 15 15 C 1.53001 * 109.47181 * 79.99645 * 12 10 2 16 16 C 1.52996 * 109.47008 * 185.00066 * 15 12 10 17 17 C 1.50700 * 109.46861 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00424 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00117 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00249 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99902 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47289 * 89.99609 * 21 19 17 23 23 H 1.48497 * 109.47463 * 209.99915 * 21 19 17 24 24 H 1.48502 * 109.47137 * 329.99960 * 21 19 17 25 25 H 1.09000 * 109.46899 * 89.99956 * 1 2 3 26 26 H 1.08992 * 109.47334 * 209.99920 * 1 2 3 27 27 H 1.08994 * 109.46680 * 330.00544 * 1 2 3 28 28 H 1.09002 * 109.47391 * 149.99645 * 3 2 1 29 29 H 1.09001 * 109.46813 * 29.99701 * 3 2 1 30 30 H 1.08000 * 122.53900 * 359.96919 * 5 4 3 31 31 H 1.07998 * 122.55420 * 180.23076 * 6 5 4 32 32 H 1.00900 * 110.99804 * 176.04422 * 14 12 10 33 33 H 1.00896 * 110.99615 * 299.99845 * 14 12 10 34 34 H 1.08999 * 109.47326 * 305.00657 * 15 12 10 35 35 H 1.09004 * 109.46824 * 64.99966 * 15 12 10 36 36 H 1.08998 * 109.47347 * 299.99695 * 16 15 12 37 37 H 1.08991 * 109.47412 * 60.00617 * 16 15 12 38 38 H 0.97005 * 119.99964 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4489 1.7036 -1.4208 5 6 1.6307 2.4661 -2.1471 6 6 2.0741 2.7407 -3.4299 7 6 3.2487 2.1916 -3.7479 8 17 4.0483 2.3557 -5.2800 9 16 3.8622 1.2769 -2.3765 10 6 2.1389 -1.1673 0.0005 11 8 3.3517 -1.1673 0.0001 12 6 1.3854 -2.4724 0.0005 13 1 0.5216 -2.3932 0.6607 14 7 2.2674 -3.5471 0.4748 15 6 0.9139 -2.7891 -1.4202 16 6 0.0439 -4.0475 -1.4001 17 6 -0.4199 -4.3597 -2.7996 18 1 -0.1242 -3.7240 -3.6210 19 6 -1.2219 -5.4571 -3.0313 20 7 -1.6271 -5.7294 -4.2525 21 14 -1.7340 -6.5564 -1.6105 22 1 -3.0082 -6.0580 -1.0333 23 1 -1.9229 -7.9449 -2.1019 24 1 -0.6780 -6.5402 -0.5665 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5137 28 1 3.1500 1.1383 0.5139 29 1 1.6085 2.0283 0.5138 30 1 0.6944 2.8433 -1.7630 31 1 1.5105 3.3489 -4.1218 32 1 1.7673 -4.4206 0.5453 33 1 3.0762 -3.6405 -0.1212 34 1 0.3324 -1.9514 -1.8053 35 1 1.7794 -2.9558 -2.0615 36 1 0.6255 -4.8851 -1.0152 37 1 -0.8215 -3.8808 -0.7589 38 1 -2.1910 -6.5017 -4.4155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424067955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:44 Heat of formation + Delta-G solvation = -9.494524 kcal Electronic energy + Delta-G solvation = -21834.976777 eV Core-core repulsion = 18444.017838 eV Total energy + Delta-G solvation = -3390.958939 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07012 -38.18892 -36.81855 -35.77186 -35.46113 -32.83350 -31.04659 -30.33624 -27.48467 -27.00819 -25.60897 -23.85398 -22.78757 -20.41288 -19.79315 -18.94936 -17.76590 -17.45906 -16.77210 -16.14797 -15.93149 -15.13534 -14.70049 -14.32015 -14.21797 -13.83071 -13.73417 -13.59252 -13.17476 -13.14385 -12.93673 -12.70439 -12.58922 -12.45957 -12.01793 -11.72152 -11.62815 -11.38025 -11.17494 -10.98435 -10.74664 -10.37614 -10.08250 -9.90180 -9.47785 -9.32492 -8.87929 -8.69774 -8.63429 -8.62941 -8.33489 -6.12505 -4.12133 0.61081 1.00668 1.74553 2.10410 2.36885 2.77982 3.07651 3.23328 3.32150 3.33063 4.36374 4.51629 4.58868 4.97889 4.98773 5.05976 5.07583 5.20190 5.22366 5.29810 5.43157 5.54451 5.58043 5.72989 5.76687 5.87679 6.13225 6.14900 6.29350 6.37937 6.63570 7.07551 7.18877 7.20667 7.45050 7.65259 7.75578 8.27148 8.43855 8.91774 9.48593 11.00739 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.003735 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.501890 B = 7494.686746 C = 8583.217370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.616 5.616 3 C 0.187 3.813 4 C -0.194 4.194 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.157 4.157 8 Cl -0.019 7.019 9 S 0.190 5.810 10 C 0.527 3.473 11 O -0.530 6.530 12 C 0.071 3.929 13 H 0.098 0.902 14 N -0.831 5.831 15 C -0.129 4.129 16 C -0.009 4.009 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.351 0.649 33 H 0.348 0.652 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.321 18.511 7.413 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.350 5.350 3 C 0.062 3.938 4 C -0.313 4.313 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.301 4.301 8 Cl 0.009 6.991 9 S 0.454 5.546 10 C 0.316 3.684 11 O -0.405 6.405 12 C -0.044 4.044 13 H 0.116 0.884 14 N -0.363 5.363 15 C -0.169 4.169 16 C -0.047 4.047 17 C -0.561 4.561 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.339 17.943 8.106 21.383 hybrid contribution -2.007 -0.196 -1.028 2.264 sum 6.332 17.747 7.078 20.129 Atomic orbital electron populations 1.21952 0.78804 1.03323 1.02773 1.47908 1.07289 1.05098 1.74726 1.19806 0.98922 0.85719 0.89343 1.25098 0.99299 1.04939 1.02003 1.19920 1.01038 1.01015 0.93242 1.20148 0.95137 1.02604 0.97594 1.25472 1.00888 1.09451 0.94299 1.98364 1.78642 1.96619 1.25432 1.84894 1.20704 1.47884 1.01145 1.20878 0.88016 0.85184 0.74347 1.90636 1.13948 1.87180 1.48703 1.21574 0.95122 0.89360 0.98296 0.88406 1.58763 1.10978 1.09081 1.57483 1.22190 1.00693 1.00870 0.93111 1.19560 0.94352 0.92440 0.98301 1.21055 1.30904 1.11693 0.92459 0.91102 1.25037 0.95505 0.97313 0.95517 1.69914 1.35728 1.28271 1.19976 0.86775 0.79364 0.80093 0.83002 1.20256 1.21331 1.18980 0.91850 0.90189 0.91094 0.88683 0.88353 0.83618 0.83585 0.83455 0.83852 0.91855 0.92110 0.96628 0.96859 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 9.61 59.85 0.58 1.29 16 2 N -0.62 -7.43 2.86 -182.95 -0.52 -7.95 16 3 C 0.19 1.92 5.94 -5.19 -0.03 1.89 16 4 C -0.19 -2.18 6.09 -36.01 -0.22 -2.40 16 5 C -0.12 -1.21 10.05 -41.20 -0.41 -1.62 16 6 C -0.12 -1.31 10.13 -41.15 -0.42 -1.73 16 7 C -0.16 -1.90 7.10 29.07 0.21 -1.70 16 8 Cl -0.02 -0.22 29.29 -51.86 -1.52 -1.74 16 9 S 0.19 2.44 23.33 -107.50 -2.51 -0.07 16 10 C 0.53 8.14 6.92 -10.98 -0.08 8.07 16 11 O -0.53 -9.49 15.83 5.56 0.09 -9.40 16 12 C 0.07 1.12 2.47 -68.86 -0.17 0.95 16 13 H 0.10 1.40 6.31 -51.93 -0.33 1.07 16 14 N -0.83 -13.23 8.94 -5.65 -0.05 -13.28 16 15 C -0.13 -2.41 4.71 -26.73 -0.13 -2.53 16 16 C -0.01 -0.20 3.81 -27.89 -0.11 -0.31 16 17 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 21 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 25 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 26 H 0.08 0.78 5.94 -51.93 -0.31 0.47 16 27 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 28 H 0.09 1.07 7.42 -51.93 -0.39 0.69 16 29 H 0.10 0.68 7.89 -51.93 -0.41 0.27 16 30 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.35 5.43 7.55 -39.29 -0.30 5.13 16 33 H 0.35 5.70 8.58 -39.29 -0.34 5.36 16 34 H 0.06 1.17 6.94 -51.93 -0.36 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.34 5.93 -51.93 -0.31 0.03 16 37 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -32.09 344.61 -9.21 -41.30 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.79 Total: 7.21 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.21 Total: -10.99 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.20 Total: -47.72 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.51 Total: -0.07 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.09 -9.21 -41.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424067955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.803 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds