Wall clock time and date at job start Tue Mar 31 2020 11:05:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46499 * 120.00381 * 2 1
4 4 C 1.50701 * 109.46992 * 269.99655 * 3 2 1
5 5 C 1.33351 * 125.18473 * 89.72129 * 4 3 2
6 6 C 1.38477 * 114.92552 * 179.79577 * 5 4 3
7 7 C 1.33499 * 114.88509 * 0.49482 * 6 5 4
8 8 Cl 1.73600 * 125.21136 * 179.76034 * 7 6 5
9 9 S 1.75869 * 125.19012 * 270.02349 * 4 3 2
10 10 C 1.34781 * 119.99832 * 179.97438 * 2 1 3
11 11 O 1.21281 * 120.00142 * 179.97438 * 10 2 1
12 12 C 1.50703 * 120.00021 * 0.02562 * 10 2 1
13 13 H 1.09003 * 109.46807 * 320.00164 * 12 10 2
14 14 N 1.46902 * 109.47159 * 199.99876 * 12 10 2
15 15 C 1.53001 * 109.47181 * 79.99645 * 12 10 2
16 16 C 1.52996 * 109.47008 * 185.00066 * 15 12 10
17 17 C 1.50700 * 109.46861 * 180.02562 * 16 15 12
18 18 H 1.08001 * 120.00424 * 359.97438 * 17 16 15
19 19 C 1.37881 * 120.00117 * 179.97438 * 17 16 15
20 20 N 1.31515 * 120.00249 * 179.97438 * 19 17 16
21 21 Si 1.86800 * 119.99902 * 0.02562 * 19 17 16
22 22 H 1.48500 * 109.47289 * 89.99609 * 21 19 17
23 23 H 1.48497 * 109.47463 * 209.99915 * 21 19 17
24 24 H 1.48502 * 109.47137 * 329.99960 * 21 19 17
25 25 H 1.09000 * 109.46899 * 89.99956 * 1 2 3
26 26 H 1.08992 * 109.47334 * 209.99920 * 1 2 3
27 27 H 1.08994 * 109.46680 * 330.00544 * 1 2 3
28 28 H 1.09002 * 109.47391 * 149.99645 * 3 2 1
29 29 H 1.09001 * 109.46813 * 29.99701 * 3 2 1
30 30 H 1.08000 * 122.53900 * 359.96919 * 5 4 3
31 31 H 1.07998 * 122.55420 * 180.23076 * 6 5 4
32 32 H 1.00900 * 110.99804 * 176.04422 * 14 12 10
33 33 H 1.00896 * 110.99615 * 299.99845 * 14 12 10
34 34 H 1.08999 * 109.47326 * 305.00657 * 15 12 10
35 35 H 1.09004 * 109.46824 * 64.99966 * 15 12 10
36 36 H 1.08998 * 109.47347 * 299.99695 * 16 15 12
37 37 H 1.08991 * 109.47412 * 60.00617 * 16 15 12
38 38 H 0.97005 * 119.99964 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.4489 1.7036 -1.4208
5 6 1.6307 2.4661 -2.1471
6 6 2.0741 2.7407 -3.4299
7 6 3.2487 2.1916 -3.7479
8 17 4.0483 2.3557 -5.2800
9 16 3.8622 1.2769 -2.3765
10 6 2.1389 -1.1673 0.0005
11 8 3.3517 -1.1673 0.0001
12 6 1.3854 -2.4724 0.0005
13 1 0.5216 -2.3932 0.6607
14 7 2.2674 -3.5471 0.4748
15 6 0.9139 -2.7891 -1.4202
16 6 0.0439 -4.0475 -1.4001
17 6 -0.4199 -4.3597 -2.7996
18 1 -0.1242 -3.7240 -3.6210
19 6 -1.2219 -5.4571 -3.0313
20 7 -1.6271 -5.7294 -4.2525
21 14 -1.7340 -6.5564 -1.6105
22 1 -3.0082 -6.0580 -1.0333
23 1 -1.9229 -7.9449 -2.1019
24 1 -0.6780 -6.5402 -0.5665
25 1 -0.3633 0.0000 -1.0277
26 1 -0.3633 -0.8899 0.5138
27 1 -0.3632 0.8900 0.5137
28 1 3.1500 1.1383 0.5139
29 1 1.6085 2.0283 0.5138
30 1 0.6944 2.8433 -1.7630
31 1 1.5105 3.3489 -4.1218
32 1 1.7673 -4.4206 0.5453
33 1 3.0762 -3.6405 -0.1212
34 1 0.3324 -1.9514 -1.8053
35 1 1.7794 -2.9558 -2.0615
36 1 0.6255 -4.8851 -1.0152
37 1 -0.8215 -3.8808 -0.7589
38 1 -2.1910 -6.5017 -4.4155
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000424067955.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:44
Heat of formation + Delta-G solvation = -9.494524 kcal
Electronic energy + Delta-G solvation = -21834.976777 eV
Core-core repulsion = 18444.017838 eV
Total energy + Delta-G solvation = -3390.958939 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 316.075 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.07012 -38.18892 -36.81855 -35.77186 -35.46113 -32.83350 -31.04659 -30.33624
-27.48467 -27.00819 -25.60897 -23.85398 -22.78757 -20.41288 -19.79315 -18.94936
-17.76590 -17.45906 -16.77210 -16.14797 -15.93149 -15.13534 -14.70049 -14.32015
-14.21797 -13.83071 -13.73417 -13.59252 -13.17476 -13.14385 -12.93673 -12.70439
-12.58922 -12.45957 -12.01793 -11.72152 -11.62815 -11.38025 -11.17494 -10.98435
-10.74664 -10.37614 -10.08250 -9.90180 -9.47785 -9.32492 -8.87929 -8.69774
-8.63429 -8.62941 -8.33489 -6.12505 -4.12133 0.61081 1.00668 1.74553
2.10410 2.36885 2.77982 3.07651 3.23328 3.32150 3.33063 4.36374
4.51629 4.58868 4.97889 4.98773 5.05976 5.07583 5.20190 5.22366
5.29810 5.43157 5.54451 5.58043 5.72989 5.76687 5.87679 6.13225
6.14900 6.29350 6.37937 6.63570 7.07551 7.18877 7.20667 7.45050
7.65259 7.75578 8.27148 8.43855 8.91774 9.48593 11.00739
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.013619 B = 0.003735 C = 0.003261
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2055.501890 B = 7494.686746 C = 8583.217370
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.074 3.926
2 N -0.616 5.616
3 C 0.187 3.813
4 C -0.194 4.194
5 C -0.121 4.121
6 C -0.122 4.122
7 C -0.157 4.157
8 Cl -0.019 7.019
9 S 0.190 5.810
10 C 0.527 3.473
11 O -0.530 6.530
12 C 0.071 3.929
13 H 0.098 0.902
14 N -0.831 5.831
15 C -0.129 4.129
16 C -0.009 4.009
17 C -0.523 4.523
18 H 0.071 0.929
19 C 0.068 3.932
20 N -0.900 5.900
21 Si 0.880 3.120
22 H -0.277 1.277
23 H -0.287 1.287
24 H -0.265 1.265
25 H 0.063 0.937
26 H 0.080 0.920
27 H 0.070 0.930
28 H 0.095 0.905
29 H 0.098 0.902
30 H 0.146 0.854
31 H 0.146 0.854
32 H 0.351 0.649
33 H 0.348 0.652
34 H 0.063 0.937
35 H 0.060 0.940
36 H 0.016 0.984
37 H 0.013 0.987
38 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.321 18.511 7.413 20.918
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.350 5.350
3 C 0.062 3.938
4 C -0.313 4.313
5 C -0.152 4.152
6 C -0.155 4.155
7 C -0.301 4.301
8 Cl 0.009 6.991
9 S 0.454 5.546
10 C 0.316 3.684
11 O -0.405 6.405
12 C -0.044 4.044
13 H 0.116 0.884
14 N -0.363 5.363
15 C -0.169 4.169
16 C -0.047 4.047
17 C -0.561 4.561
18 H 0.089 0.911
19 C -0.134 4.134
20 N -0.539 5.539
21 Si 0.708 3.292
22 H -0.203 1.203
23 H -0.213 1.213
24 H -0.190 1.190
25 H 0.081 0.919
26 H 0.098 0.902
27 H 0.089 0.911
28 H 0.113 0.887
29 H 0.116 0.884
30 H 0.164 0.836
31 H 0.164 0.836
32 H 0.165 0.835
33 H 0.161 0.839
34 H 0.081 0.919
35 H 0.079 0.921
36 H 0.034 0.966
37 H 0.031 0.969
38 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 8.339 17.943 8.106 21.383
hybrid contribution -2.007 -0.196 -1.028 2.264
sum 6.332 17.747 7.078 20.129
Atomic orbital electron populations
1.21952 0.78804 1.03323 1.02773 1.47908 1.07289 1.05098 1.74726
1.19806 0.98922 0.85719 0.89343 1.25098 0.99299 1.04939 1.02003
1.19920 1.01038 1.01015 0.93242 1.20148 0.95137 1.02604 0.97594
1.25472 1.00888 1.09451 0.94299 1.98364 1.78642 1.96619 1.25432
1.84894 1.20704 1.47884 1.01145 1.20878 0.88016 0.85184 0.74347
1.90636 1.13948 1.87180 1.48703 1.21574 0.95122 0.89360 0.98296
0.88406 1.58763 1.10978 1.09081 1.57483 1.22190 1.00693 1.00870
0.93111 1.19560 0.94352 0.92440 0.98301 1.21055 1.30904 1.11693
0.92459 0.91102 1.25037 0.95505 0.97313 0.95517 1.69914 1.35728
1.28271 1.19976 0.86775 0.79364 0.80093 0.83002 1.20256 1.21331
1.18980 0.91850 0.90189 0.91094 0.88683 0.88353 0.83618 0.83585
0.83455 0.83852 0.91855 0.92110 0.96628 0.96859 0.92630
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.72 9.61 59.85 0.58 1.29 16
2 N -0.62 -7.43 2.86 -182.95 -0.52 -7.95 16
3 C 0.19 1.92 5.94 -5.19 -0.03 1.89 16
4 C -0.19 -2.18 6.09 -36.01 -0.22 -2.40 16
5 C -0.12 -1.21 10.05 -41.20 -0.41 -1.62 16
6 C -0.12 -1.31 10.13 -41.15 -0.42 -1.73 16
7 C -0.16 -1.90 7.10 29.07 0.21 -1.70 16
8 Cl -0.02 -0.22 29.29 -51.86 -1.52 -1.74 16
9 S 0.19 2.44 23.33 -107.50 -2.51 -0.07 16
10 C 0.53 8.14 6.92 -10.98 -0.08 8.07 16
11 O -0.53 -9.49 15.83 5.56 0.09 -9.40 16
12 C 0.07 1.12 2.47 -68.86 -0.17 0.95 16
13 H 0.10 1.40 6.31 -51.93 -0.33 1.07 16
14 N -0.83 -13.23 8.94 -5.65 -0.05 -13.28 16
15 C -0.13 -2.41 4.71 -26.73 -0.13 -2.53 16
16 C -0.01 -0.20 3.81 -27.89 -0.11 -0.31 16
17 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16
18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16
19 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16
20 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16
21 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16
22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
24 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16
25 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16
26 H 0.08 0.78 5.94 -51.93 -0.31 0.47 16
27 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16
28 H 0.09 1.07 7.42 -51.93 -0.39 0.69 16
29 H 0.10 0.68 7.89 -51.93 -0.41 0.27 16
30 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16
31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16
32 H 0.35 5.43 7.55 -39.29 -0.30 5.13 16
33 H 0.35 5.70 8.58 -39.29 -0.34 5.36 16
34 H 0.06 1.17 6.94 -51.93 -0.36 0.81 16
35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
36 H 0.02 0.34 5.93 -51.93 -0.31 0.03 16
37 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16
38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
LS Contribution 344.61 15.07 5.19 5.19
Total: -1.00 -32.09 344.61 -9.21 -41.30
By element:
Atomic # 1 Polarization: 12.00 SS G_CDS: -4.79 Total: 7.21 kcal
Atomic # 6 Polarization: -9.78 SS G_CDS: -1.21 Total: -10.99 kcal
Atomic # 7 Polarization: -47.92 SS G_CDS: 0.20 Total: -47.72 kcal
Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal
Atomic # 16 Polarization: 2.44 SS G_CDS: -2.51 Total: -0.07 kcal
Atomic # 17 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.74 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -32.09 -9.21 -41.30 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424067955.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.803 kcal
(2) G-P(sol) polarization free energy of solvation -32.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.495 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds