Wall clock time and date at job start Tue Mar 31 2020 11:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.50701 * 109.46992 * 269.99655 * 3 2 1 5 5 C 1.33351 * 125.18473 * 89.72129 * 4 3 2 6 6 C 1.38477 * 114.92552 * 179.79577 * 5 4 3 7 7 C 1.33499 * 114.88509 * 0.49482 * 6 5 4 8 8 Cl 1.73600 * 125.21136 * 179.76034 * 7 6 5 9 9 S 1.75869 * 125.19012 * 270.02349 * 4 3 2 10 10 C 1.34781 * 119.99832 * 179.97438 * 2 1 3 11 11 O 1.21281 * 120.00142 * 179.97438 * 10 2 1 12 12 C 1.50703 * 120.00021 * 0.02562 * 10 2 1 13 13 H 1.09003 * 109.46807 * 320.00164 * 12 10 2 14 14 N 1.46902 * 109.47159 * 199.99876 * 12 10 2 15 15 C 1.53001 * 109.47181 * 79.99645 * 12 10 2 16 16 C 1.52996 * 109.47008 * 185.00066 * 15 12 10 17 17 C 1.50700 * 109.46861 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00424 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00117 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00249 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99902 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47289 * 89.99609 * 21 19 17 23 23 H 1.48497 * 109.47463 * 209.99915 * 21 19 17 24 24 H 1.48502 * 109.47137 * 329.99960 * 21 19 17 25 25 H 1.09000 * 109.46899 * 89.99956 * 1 2 3 26 26 H 1.08992 * 109.47334 * 209.99920 * 1 2 3 27 27 H 1.08994 * 109.46680 * 330.00544 * 1 2 3 28 28 H 1.09002 * 109.47391 * 149.99645 * 3 2 1 29 29 H 1.09001 * 109.46813 * 29.99701 * 3 2 1 30 30 H 1.08000 * 122.53900 * 359.96919 * 5 4 3 31 31 H 1.07998 * 122.55420 * 180.23076 * 6 5 4 32 32 H 1.00900 * 110.99804 * 176.04422 * 14 12 10 33 33 H 1.00896 * 110.99615 * 299.99845 * 14 12 10 34 34 H 1.08999 * 109.47326 * 305.00657 * 15 12 10 35 35 H 1.09004 * 109.46824 * 64.99966 * 15 12 10 36 36 H 1.08998 * 109.47347 * 299.99695 * 16 15 12 37 37 H 1.08991 * 109.47412 * 60.00617 * 16 15 12 38 38 H 0.97005 * 119.99964 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4489 1.7036 -1.4208 5 6 1.6307 2.4661 -2.1471 6 6 2.0741 2.7407 -3.4299 7 6 3.2487 2.1916 -3.7479 8 17 4.0483 2.3557 -5.2800 9 16 3.8622 1.2769 -2.3765 10 6 2.1389 -1.1673 0.0005 11 8 3.3517 -1.1673 0.0001 12 6 1.3854 -2.4724 0.0005 13 1 0.5216 -2.3932 0.6607 14 7 2.2674 -3.5471 0.4748 15 6 0.9139 -2.7891 -1.4202 16 6 0.0439 -4.0475 -1.4001 17 6 -0.4199 -4.3597 -2.7996 18 1 -0.1242 -3.7240 -3.6210 19 6 -1.2219 -5.4571 -3.0313 20 7 -1.6271 -5.7294 -4.2525 21 14 -1.7340 -6.5564 -1.6105 22 1 -3.0082 -6.0580 -1.0333 23 1 -1.9229 -7.9449 -2.1019 24 1 -0.6780 -6.5402 -0.5665 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5137 28 1 3.1500 1.1383 0.5139 29 1 1.6085 2.0283 0.5138 30 1 0.6944 2.8433 -1.7630 31 1 1.5105 3.3489 -4.1218 32 1 1.7673 -4.4206 0.5453 33 1 3.0762 -3.6405 -0.1212 34 1 0.3324 -1.9514 -1.8053 35 1 1.7794 -2.9558 -2.0615 36 1 0.6255 -4.8851 -1.0152 37 1 -0.8215 -3.8808 -0.7589 38 1 -2.1910 -6.5017 -4.4155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424067955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:43 Heat of formation + Delta-G solvation = -31.159277 kcal Electronic energy + Delta-G solvation = -21835.916231 eV Core-core repulsion = 18444.017838 eV Total energy + Delta-G solvation = -3391.898393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18227 -39.07337 -37.75113 -37.16150 -36.50394 -34.81995 -32.09582 -31.92160 -28.69503 -28.00163 -26.85179 -25.12627 -23.91050 -22.07621 -20.69342 -20.05226 -19.00499 -18.66307 -18.40187 -17.20524 -16.82780 -16.29150 -16.17529 -15.84430 -15.60865 -15.04557 -14.77853 -14.65483 -14.54220 -14.32909 -14.03694 -13.87621 -13.71377 -13.48394 -13.25680 -12.94901 -12.80086 -12.56996 -12.50935 -12.08365 -12.02299 -11.84577 -11.67521 -11.64896 -11.40805 -10.76716 -10.74714 -9.83123 -9.71719 -9.59445 -9.52906 -8.29261 -6.35043 -0.26836 0.10821 0.87484 1.19988 1.38319 1.41176 1.50916 1.52129 1.62785 2.13950 2.36826 3.06439 3.52834 3.70105 3.76298 4.01949 4.13833 4.17010 4.30852 4.38409 4.48642 4.57451 4.63970 4.69758 4.78847 4.92856 4.93788 5.03748 5.04838 5.35364 5.36867 5.45811 5.50045 5.62851 6.02727 6.25368 6.32955 6.47544 6.73389 7.15249 7.29883 8.87706 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.003735 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.501890 B = 7494.686746 C = 8583.217370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.608 5.608 3 C 0.185 3.815 4 C -0.193 4.193 5 C -0.111 4.111 6 C -0.119 4.119 7 C -0.169 4.169 8 Cl -0.021 7.021 9 S 0.123 5.877 10 C 0.521 3.479 11 O -0.562 6.562 12 C 0.079 3.921 13 H 0.122 0.878 14 N -0.830 5.830 15 C -0.115 4.115 16 C -0.004 4.004 17 C -0.534 4.534 18 H 0.023 0.977 19 C 0.003 3.997 20 N -0.954 5.954 21 Si 0.954 3.046 22 H -0.262 1.262 23 H -0.291 1.291 24 H -0.238 1.238 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.182 0.818 31 H 0.167 0.833 32 H 0.354 0.646 33 H 0.343 0.657 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.024 0.976 37 H 0.033 0.967 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.553 19.572 10.225 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.341 5.341 3 C 0.061 3.939 4 C -0.313 4.313 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.313 4.313 8 Cl 0.007 6.993 9 S 0.386 5.614 10 C 0.309 3.691 11 O -0.440 6.440 12 C -0.036 4.036 13 H 0.140 0.860 14 N -0.362 5.362 15 C -0.155 4.155 16 C -0.041 4.041 17 C -0.572 4.572 18 H 0.041 0.959 19 C -0.193 4.193 20 N -0.594 5.594 21 Si 0.776 3.224 22 H -0.187 1.187 23 H -0.217 1.217 24 H -0.161 1.161 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.100 0.900 29 H 0.162 0.838 30 H 0.199 0.801 31 H 0.185 0.815 32 H 0.169 0.831 33 H 0.156 0.844 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.560 19.047 10.933 22.921 hybrid contribution -1.475 -0.419 -2.020 2.536 sum 5.085 18.628 8.912 21.267 Atomic orbital electron populations 1.22194 0.76978 1.05517 1.02863 1.47954 1.08425 1.04706 1.73010 1.20057 0.99126 0.85792 0.88919 1.25232 0.98303 1.05373 1.02344 1.20301 1.01716 0.99705 0.92472 1.20542 0.94450 1.01806 0.98367 1.25564 1.01580 1.10147 0.94043 1.98357 1.78869 1.96637 1.25424 1.85124 1.23419 1.49606 1.03240 1.20831 0.87647 0.86090 0.74537 1.90629 1.15245 1.87723 1.50390 1.21514 0.95936 0.89811 0.96318 0.86032 1.58789 1.10854 1.09378 1.57130 1.21970 0.99031 0.99436 0.95063 1.19480 0.95475 0.94135 0.95018 1.21412 1.30705 1.10996 0.94052 0.95900 1.26077 0.95501 0.99137 0.98602 1.70090 1.37122 1.29327 1.22886 0.85614 0.80087 0.77158 0.79521 1.18663 1.21698 1.16130 0.92729 0.90049 0.87009 0.90045 0.83844 0.80062 0.81529 0.83114 0.84381 0.91906 0.94774 0.95825 0.94886 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 9.61 127.77 1.23 2.25 16 2 N -0.61 -13.09 2.86 -851.13 -2.43 -15.52 16 3 C 0.19 3.30 5.94 85.63 0.51 3.81 16 4 C -0.19 -4.01 6.09 24.58 0.15 -3.86 16 5 C -0.11 -1.89 10.05 21.22 0.21 -1.68 16 6 C -0.12 -2.34 10.13 21.25 0.22 -2.12 16 7 C -0.17 -4.08 7.10 66.75 0.47 -3.60 16 8 Cl -0.02 -0.50 29.29 -2.72 -0.08 -0.58 16 9 S 0.12 3.23 23.33 -56.49 -1.32 1.91 16 10 C 0.52 15.41 6.92 87.66 0.61 16.01 16 11 O -0.56 -20.09 15.83 -3.03 -0.05 -20.14 16 12 C 0.08 2.35 2.47 44.17 0.11 2.45 16 13 H 0.12 3.04 6.31 -2.39 -0.02 3.02 16 14 N -0.83 -25.19 8.94 -171.79 -1.54 -26.72 16 15 C -0.12 -4.24 4.71 30.59 0.14 -4.09 16 16 C 0.00 -0.15 3.81 29.85 0.11 -0.04 16 17 C -0.53 -29.85 9.66 25.60 0.25 -29.60 16 18 H 0.02 1.44 7.99 -2.91 -0.02 1.42 16 19 C 0.00 0.20 5.47 84.66 0.46 0.66 16 20 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 21 Si 0.95 42.04 27.47 68.60 1.88 43.92 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 25 H 0.05 0.97 7.65 -2.39 -0.02 0.96 16 26 H 0.08 1.26 5.94 -2.39 -0.01 1.24 16 27 H 0.11 0.84 7.89 -2.39 -0.02 0.82 16 28 H 0.08 1.73 7.42 -2.39 -0.02 1.71 16 29 H 0.14 1.27 7.89 -2.39 -0.02 1.26 16 30 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.35 10.15 7.55 -89.69 -0.68 9.47 16 33 H 0.34 11.12 8.58 -89.70 -0.77 10.35 16 34 H 0.06 2.29 6.94 -2.39 -0.02 2.27 16 35 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.02 0.98 5.93 -2.39 -0.01 0.96 16 37 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 38 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -72.82 344.61 0.85 -71.97 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.39 Total: 23.89 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 4.47 Total: -19.81 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.67 Total: -101.17 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.92 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.32 Total: 1.91 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -72.82 0.85 -71.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424067955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.808 kcal (2) G-P(sol) polarization free energy of solvation -72.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds