Wall clock time and date at job start Tue Mar 31 2020 11:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81399 * 109.47158 * 2 1 4 4 C 1.76198 * 103.00169 * 180.02562 * 3 2 1 5 5 N 1.30095 * 126.11747 * 359.97438 * 4 3 2 6 6 N 1.26095 * 117.71930 * 180.02562 * 5 4 3 7 7 C 1.29881 * 117.80052 * 359.97438 * 6 5 4 8 8 N 1.39274 * 126.09418 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00191 * 0.02839 * 8 7 6 10 10 O 1.21299 * 119.99679 * 359.97438 * 9 8 7 11 11 C 1.50693 * 120.00261 * 180.02562 * 9 8 7 12 12 H 1.09005 * 109.47168 * 319.99959 * 11 9 8 13 13 N 1.46901 * 109.47231 * 199.99856 * 11 9 8 14 14 C 1.53006 * 109.47471 * 79.99562 * 11 9 8 15 15 C 1.52999 * 109.46997 * 185.00271 * 14 11 9 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47405 * 60.00219 * 20 18 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 24 24 S 1.76486 * 107.81298 * 0.24606 * 7 6 5 25 25 H 1.09000 * 109.47335 * 59.99899 * 1 2 3 26 26 H 1.08998 * 109.46892 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46921 * 299.99666 * 1 2 3 28 28 H 1.09001 * 109.46921 * 240.00334 * 2 1 3 29 29 H 1.09000 * 109.47335 * 120.00101 * 2 1 3 30 30 H 0.97005 * 120.00168 * 180.02562 * 8 7 6 31 31 H 1.00899 * 110.99814 * 176.04311 * 13 11 9 32 32 H 1.00892 * 110.99802 * 299.99727 * 13 11 9 33 33 H 1.09000 * 109.46866 * 65.00059 * 14 11 9 34 34 H 1.09001 * 109.46611 * 305.00176 * 14 11 9 35 35 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 36 36 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 37 37 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8854 1.5117 -0.0008 5 7 4.5290 0.3811 -0.0007 6 7 5.7892 0.4235 -0.0008 7 6 6.3560 1.5921 -0.0015 8 7 7.7266 1.8393 -0.0012 9 6 8.5970 0.8102 -0.0008 10 8 8.1865 -0.3312 -0.0001 11 6 10.0800 1.0776 0.0001 12 1 10.2983 1.9169 -0.6603 13 7 10.7932 -0.1163 -0.4732 14 6 10.5367 1.4146 1.4210 15 6 12.0153 1.8074 1.4017 16 6 12.4652 2.1388 2.8014 17 1 11.7653 2.0799 3.6217 18 6 13.7691 2.5222 3.0337 19 7 14.6200 2.5992 2.0338 20 14 14.3269 2.9322 4.7686 21 1 14.1409 1.7457 5.6418 22 1 15.7620 3.3136 4.7499 23 1 13.5213 4.0641 5.2932 24 16 5.0797 2.8111 0.0052 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 8.0549 2.7521 -0.0014 31 1 11.7844 0.0586 -0.5431 32 1 10.6070 -0.9087 0.1230 33 1 10.4003 0.5441 2.0626 34 1 9.9450 2.2455 1.8053 35 1 12.1517 2.6780 0.7602 36 1 12.6070 0.9766 1.0175 37 1 15.5371 2.8693 2.1973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424076224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:44 Heat of formation + Delta-G solvation = 19.913333 kcal Electronic energy + Delta-G solvation = -20715.693755 eV Core-core repulsion = 17360.346493 eV Total energy + Delta-G solvation = -3355.347261 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28737 -39.85082 -35.88837 -35.20694 -33.29223 -32.94877 -30.93859 -30.02285 -27.51568 -26.02055 -24.22409 -23.97798 -22.31412 -20.60164 -20.18981 -19.47577 -17.99564 -17.57400 -16.53068 -16.31175 -16.17009 -15.29293 -15.25903 -14.98233 -14.63107 -14.48754 -14.32875 -13.73758 -13.38009 -13.21015 -12.89377 -12.53920 -12.30041 -12.13108 -11.91186 -11.61350 -11.22762 -11.14443 -11.00169 -10.87509 -10.76122 -10.38888 -10.29286 -10.10545 -9.96638 -9.45702 -9.33231 -9.27885 -8.50770 -8.37584 -7.94147 -6.14978 -4.18644 0.03859 0.11431 0.78172 1.04554 1.73954 2.24190 2.61748 2.79925 3.24601 3.29841 3.32124 4.24639 4.34827 4.44988 4.49461 4.69616 4.91788 4.94137 4.98876 5.21154 5.29913 5.34639 5.35050 5.52564 5.58944 5.84192 6.10826 6.35017 6.72637 6.81888 7.34290 7.41909 7.51338 7.74737 7.81269 7.94633 8.22688 8.43988 8.86750 9.46749 10.95730 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.025990 B = 0.002341 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.078646 B =11955.358229 C =12426.842600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 S 0.006 5.994 4 C -0.027 4.027 5 N -0.237 5.237 6 N -0.258 5.258 7 C 0.268 3.732 8 N -0.626 5.626 9 C 0.518 3.482 10 O -0.462 6.462 11 C 0.084 3.916 12 H 0.105 0.895 13 N -0.830 5.830 14 C -0.141 4.141 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 S 0.111 5.889 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.428 0.572 31 H 0.360 0.640 32 H 0.348 0.652 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.749 1.426 -6.165 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.260 4.260 3 S 0.234 5.766 4 C -0.417 4.417 5 N -0.078 5.078 6 N -0.102 5.102 7 C -0.106 4.106 8 N -0.280 5.280 9 C 0.302 3.698 10 O -0.328 6.328 11 C -0.032 4.032 12 H 0.122 0.878 13 N -0.363 5.363 14 C -0.180 4.180 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 S 0.348 5.652 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.267 0.733 31 H 0.176 0.824 32 H 0.162 0.838 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.751 1.307 -6.877 26.685 hybrid contribution 1.941 -0.209 1.915 2.735 sum -23.810 1.098 -4.962 24.346 Atomic orbital electron populations 1.21560 0.91432 1.03533 1.03267 1.23641 0.99915 0.94963 1.07480 1.85413 0.87363 1.12602 1.91231 1.30957 1.05789 0.93632 1.11287 1.71658 0.99567 1.21730 1.14815 1.71301 1.00767 1.18627 1.19549 1.27060 0.91533 0.91061 1.00940 1.43434 0.99578 1.12542 1.72430 1.21599 0.88876 0.84385 0.74920 1.90801 1.78820 1.20617 1.42549 1.21469 0.86899 0.95782 0.99036 0.87753 1.58722 1.15185 1.05105 1.57278 1.22464 1.01754 1.01310 0.92504 1.19106 0.87593 0.96789 0.97711 1.21113 0.95588 1.46347 0.93456 0.92724 1.25008 0.96776 0.95354 0.97117 1.69929 1.04781 1.47499 1.30846 0.86627 0.77639 0.78912 0.84675 1.20189 1.21175 1.20201 1.85706 0.97303 1.08467 1.73757 0.91435 0.90127 0.91417 0.88450 0.88439 0.73340 0.82387 0.83808 0.92247 0.92369 0.96154 0.96213 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.92 37.16 0.37 -0.27 16 2 C -0.11 -0.80 6.30 37.16 0.23 -0.56 16 3 S 0.01 0.05 22.16 -107.50 -2.38 -2.33 16 4 C -0.03 -0.33 7.90 52.03 0.41 0.08 16 5 N -0.24 -3.61 11.17 31.28 0.35 -3.27 16 6 N -0.26 -4.44 9.78 31.05 0.30 -4.13 16 7 C 0.27 3.81 8.42 -86.87 -0.73 3.08 16 8 N -0.63 -8.18 5.41 -11.61 -0.06 -8.24 16 9 C 0.52 8.36 7.04 -10.99 -0.08 8.28 16 10 O -0.46 -9.17 14.97 5.54 0.08 -9.08 16 11 C 0.08 1.31 3.21 -68.86 -0.22 1.09 16 12 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 13 N -0.83 -13.41 8.94 -5.65 -0.05 -13.47 16 14 C -0.14 -2.57 4.78 -26.73 -0.13 -2.70 16 15 C 0.03 0.58 4.74 -27.88 -0.13 0.45 16 16 C -0.53 -13.99 9.11 -34.44 -0.31 -14.30 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 20 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 S 0.11 1.19 23.53 -107.50 -2.53 -1.34 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.43 3.98 8.82 -40.82 -0.36 3.62 16 31 H 0.36 5.77 7.55 -39.29 -0.30 5.47 16 32 H 0.35 5.76 8.58 -39.30 -0.34 5.42 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -33.07 348.14 -8.71 -41.78 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.70 Total: 6.90 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.69 Total: -3.33 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 1.28 Total: -53.70 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -4.91 Total: -3.67 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.07 -8.71 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424076224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.692 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds