Wall clock time and date at job start Tue Mar 31 2020 11:03:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 S 1.81399 * 109.47158 * 2 1
4 4 C 1.76198 * 103.00169 * 180.02562 * 3 2 1
5 5 N 1.30095 * 126.11747 * 359.97438 * 4 3 2
6 6 N 1.26095 * 117.71930 * 180.02562 * 5 4 3
7 7 C 1.29881 * 117.80052 * 359.97438 * 6 5 4
8 8 N 1.39274 * 126.09418 * 179.97438 * 7 6 5
9 9 C 1.34781 * 120.00191 * 0.02839 * 8 7 6
10 10 O 1.21299 * 119.99679 * 359.97438 * 9 8 7
11 11 C 1.50693 * 120.00261 * 180.02562 * 9 8 7
12 12 H 1.09005 * 109.47168 * 319.99959 * 11 9 8
13 13 N 1.46901 * 109.47231 * 199.99856 * 11 9 8
14 14 C 1.53006 * 109.47471 * 79.99562 * 11 9 8
15 15 C 1.52999 * 109.46997 * 185.00271 * 14 11 9
16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11
17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14
18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14
19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15
21 21 H 1.48490 * 109.47405 * 60.00219 * 20 18 16
22 22 H 1.48503 * 109.46845 * 180.02562 * 20 18 16
23 23 H 1.48503 * 109.47399 * 299.99813 * 20 18 16
24 24 S 1.76486 * 107.81298 * 0.24606 * 7 6 5
25 25 H 1.09000 * 109.47335 * 59.99899 * 1 2 3
26 26 H 1.08998 * 109.46892 * 179.97438 * 1 2 3
27 27 H 1.09001 * 109.46921 * 299.99666 * 1 2 3
28 28 H 1.09001 * 109.46921 * 240.00334 * 2 1 3
29 29 H 1.09000 * 109.47335 * 120.00101 * 2 1 3
30 30 H 0.97005 * 120.00168 * 180.02562 * 8 7 6
31 31 H 1.00899 * 110.99814 * 176.04311 * 13 11 9
32 32 H 1.00892 * 110.99802 * 299.99727 * 13 11 9
33 33 H 1.09000 * 109.46866 * 65.00059 * 14 11 9
34 34 H 1.09001 * 109.46611 * 305.00176 * 14 11 9
35 35 H 1.09000 * 109.47486 * 60.00167 * 15 14 11
36 36 H 1.09001 * 109.47362 * 299.99445 * 15 14 11
37 37 H 0.96996 * 119.99730 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7102 0.0000
4 6 3.8854 1.5117 -0.0008
5 7 4.5290 0.3811 -0.0007
6 7 5.7892 0.4235 -0.0008
7 6 6.3560 1.5921 -0.0015
8 7 7.7266 1.8393 -0.0012
9 6 8.5970 0.8102 -0.0008
10 8 8.1865 -0.3312 -0.0001
11 6 10.0800 1.0776 0.0001
12 1 10.2983 1.9169 -0.6603
13 7 10.7932 -0.1163 -0.4732
14 6 10.5367 1.4146 1.4210
15 6 12.0153 1.8074 1.4017
16 6 12.4652 2.1388 2.8014
17 1 11.7653 2.0799 3.6217
18 6 13.7691 2.5222 3.0337
19 7 14.6200 2.5992 2.0338
20 14 14.3269 2.9322 4.7686
21 1 14.1409 1.7457 5.6418
22 1 15.7620 3.3136 4.7499
23 1 13.5213 4.0641 5.2932
24 16 5.0797 2.8111 0.0052
25 1 -0.3634 0.5138 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.8933 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8900
30 1 8.0549 2.7521 -0.0014
31 1 11.7844 0.0586 -0.5431
32 1 10.6070 -0.9087 0.1230
33 1 10.4003 0.5441 2.0626
34 1 9.9450 2.2455 1.8053
35 1 12.1517 2.6780 0.7602
36 1 12.6070 0.9766 1.0175
37 1 15.5371 2.8693 2.1973
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000424076224.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:44
Heat of formation + Delta-G solvation = 19.913333 kcal
Electronic energy + Delta-G solvation = -20715.693755 eV
Core-core repulsion = 17360.346493 eV
Total energy + Delta-G solvation = -3355.347261 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 316.077 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.28737 -39.85082 -35.88837 -35.20694 -33.29223 -32.94877 -30.93859 -30.02285
-27.51568 -26.02055 -24.22409 -23.97798 -22.31412 -20.60164 -20.18981 -19.47577
-17.99564 -17.57400 -16.53068 -16.31175 -16.17009 -15.29293 -15.25903 -14.98233
-14.63107 -14.48754 -14.32875 -13.73758 -13.38009 -13.21015 -12.89377 -12.53920
-12.30041 -12.13108 -11.91186 -11.61350 -11.22762 -11.14443 -11.00169 -10.87509
-10.76122 -10.38888 -10.29286 -10.10545 -9.96638 -9.45702 -9.33231 -9.27885
-8.50770 -8.37584 -7.94147 -6.14978 -4.18644 0.03859 0.11431 0.78172
1.04554 1.73954 2.24190 2.61748 2.79925 3.24601 3.29841 3.32124
4.24639 4.34827 4.44988 4.49461 4.69616 4.91788 4.94137 4.98876
5.21154 5.29913 5.34639 5.35050 5.52564 5.58944 5.84192 6.10826
6.35017 6.72637 6.81888 7.34290 7.41909 7.51338 7.74737 7.81269
7.94633 8.22688 8.43988 8.86750 9.46749 10.95730
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.025990 B = 0.002341 C = 0.002253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1077.078646 B =11955.358229 C =12426.842600
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.110 4.110
3 S 0.006 5.994
4 C -0.027 4.027
5 N -0.237 5.237
6 N -0.258 5.258
7 C 0.268 3.732
8 N -0.626 5.626
9 C 0.518 3.482
10 O -0.462 6.462
11 C 0.084 3.916
12 H 0.105 0.895
13 N -0.830 5.830
14 C -0.141 4.141
15 C 0.025 3.975
16 C -0.527 4.527
17 H 0.055 0.945
18 C 0.059 3.941
19 N -0.892 5.892
20 Si 0.894 3.106
21 H -0.276 1.276
22 H -0.286 1.286
23 H -0.276 1.276
24 S 0.111 5.889
25 H 0.067 0.933
26 H 0.080 0.920
27 H 0.067 0.933
28 H 0.097 0.903
29 H 0.097 0.903
30 H 0.428 0.572
31 H 0.360 0.640
32 H 0.348 0.652
33 H 0.059 0.941
34 H 0.058 0.942
35 H 0.020 0.980
36 H 0.020 0.980
37 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.749 1.426 -6.165 25.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.260 4.260
3 S 0.234 5.766
4 C -0.417 4.417
5 N -0.078 5.078
6 N -0.102 5.102
7 C -0.106 4.106
8 N -0.280 5.280
9 C 0.302 3.698
10 O -0.328 6.328
11 C -0.032 4.032
12 H 0.122 0.878
13 N -0.363 5.363
14 C -0.180 4.180
15 C -0.012 4.012
16 C -0.565 4.565
17 H 0.073 0.927
18 C -0.143 4.143
19 N -0.531 5.531
20 Si 0.721 3.279
21 H -0.202 1.202
22 H -0.212 1.212
23 H -0.202 1.202
24 S 0.348 5.652
25 H 0.086 0.914
26 H 0.099 0.901
27 H 0.086 0.914
28 H 0.116 0.884
29 H 0.116 0.884
30 H 0.267 0.733
31 H 0.176 0.824
32 H 0.162 0.838
33 H 0.078 0.922
34 H 0.076 0.924
35 H 0.038 0.962
36 H 0.038 0.962
37 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -25.751 1.307 -6.877 26.685
hybrid contribution 1.941 -0.209 1.915 2.735
sum -23.810 1.098 -4.962 24.346
Atomic orbital electron populations
1.21560 0.91432 1.03533 1.03267 1.23641 0.99915 0.94963 1.07480
1.85413 0.87363 1.12602 1.91231 1.30957 1.05789 0.93632 1.11287
1.71658 0.99567 1.21730 1.14815 1.71301 1.00767 1.18627 1.19549
1.27060 0.91533 0.91061 1.00940 1.43434 0.99578 1.12542 1.72430
1.21599 0.88876 0.84385 0.74920 1.90801 1.78820 1.20617 1.42549
1.21469 0.86899 0.95782 0.99036 0.87753 1.58722 1.15185 1.05105
1.57278 1.22464 1.01754 1.01310 0.92504 1.19106 0.87593 0.96789
0.97711 1.21113 0.95588 1.46347 0.93456 0.92724 1.25008 0.96776
0.95354 0.97117 1.69929 1.04781 1.47499 1.30846 0.86627 0.77639
0.78912 0.84675 1.20189 1.21175 1.20201 1.85706 0.97303 1.08467
1.73757 0.91435 0.90127 0.91417 0.88450 0.88439 0.73340 0.82387
0.83808 0.92247 0.92369 0.96154 0.96213 0.92741
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.64 9.92 37.16 0.37 -0.27 16
2 C -0.11 -0.80 6.30 37.16 0.23 -0.56 16
3 S 0.01 0.05 22.16 -107.50 -2.38 -2.33 16
4 C -0.03 -0.33 7.90 52.03 0.41 0.08 16
5 N -0.24 -3.61 11.17 31.28 0.35 -3.27 16
6 N -0.26 -4.44 9.78 31.05 0.30 -4.13 16
7 C 0.27 3.81 8.42 -86.87 -0.73 3.08 16
8 N -0.63 -8.18 5.41 -11.61 -0.06 -8.24 16
9 C 0.52 8.36 7.04 -10.99 -0.08 8.28 16
10 O -0.46 -9.17 14.97 5.54 0.08 -9.08 16
11 C 0.08 1.31 3.21 -68.86 -0.22 1.09 16
12 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16
13 N -0.83 -13.41 8.94 -5.65 -0.05 -13.47 16
14 C -0.14 -2.57 4.78 -26.73 -0.13 -2.70 16
15 C 0.03 0.58 4.74 -27.88 -0.13 0.45 16
16 C -0.53 -13.99 9.11 -34.44 -0.31 -14.30 16
17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16
18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
19 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16
20 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16
21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
24 S 0.11 1.19 23.53 -107.50 -2.53 -1.34 16
25 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16
26 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16
27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
28 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16
29 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16
30 H 0.43 3.98 8.82 -40.82 -0.36 3.62 16
31 H 0.36 5.77 7.55 -39.29 -0.30 5.47 16
32 H 0.35 5.76 8.58 -39.30 -0.34 5.42 16
33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16
36 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16
37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
LS Contribution 348.14 15.07 5.25 5.25
Total: -1.00 -33.07 348.14 -8.71 -41.78
By element:
Atomic # 1 Polarization: 11.60 SS G_CDS: -4.70 Total: 6.90 kcal
Atomic # 6 Polarization: -2.64 SS G_CDS: -0.69 Total: -3.33 kcal
Atomic # 7 Polarization: -54.98 SS G_CDS: 1.28 Total: -53.70 kcal
Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.08 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal
Atomic # 16 Polarization: 1.24 SS G_CDS: -4.91 Total: -3.67 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -33.07 -8.71 -41.78 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424076224.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.692 kcal
(2) G-P(sol) polarization free energy of solvation -33.068 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.625 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.913 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds