Wall clock time and date at job start Tue Mar 31 2020 11:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81399 * 109.47158 * 2 1 4 4 C 1.76198 * 103.00169 * 180.02562 * 3 2 1 5 5 N 1.30095 * 126.11747 * 359.97438 * 4 3 2 6 6 N 1.26095 * 117.71930 * 180.02562 * 5 4 3 7 7 C 1.29881 * 117.80052 * 359.97438 * 6 5 4 8 8 N 1.39274 * 126.09418 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00191 * 0.02839 * 8 7 6 10 10 O 1.21299 * 119.99679 * 359.97438 * 9 8 7 11 11 C 1.50693 * 120.00261 * 180.02562 * 9 8 7 12 12 H 1.09005 * 109.47168 * 319.99959 * 11 9 8 13 13 N 1.46901 * 109.47231 * 199.99856 * 11 9 8 14 14 C 1.53006 * 109.47471 * 79.99562 * 11 9 8 15 15 C 1.52999 * 109.46997 * 185.00271 * 14 11 9 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47405 * 60.00219 * 20 18 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 24 24 S 1.76486 * 107.81298 * 0.24606 * 7 6 5 25 25 H 1.09000 * 109.47335 * 59.99899 * 1 2 3 26 26 H 1.08998 * 109.46892 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46921 * 299.99666 * 1 2 3 28 28 H 1.09001 * 109.46921 * 240.00334 * 2 1 3 29 29 H 1.09000 * 109.47335 * 120.00101 * 2 1 3 30 30 H 0.97005 * 120.00168 * 180.02562 * 8 7 6 31 31 H 1.00899 * 110.99814 * 176.04311 * 13 11 9 32 32 H 1.00892 * 110.99802 * 299.99727 * 13 11 9 33 33 H 1.09000 * 109.46866 * 65.00059 * 14 11 9 34 34 H 1.09001 * 109.46611 * 305.00176 * 14 11 9 35 35 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 36 36 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 37 37 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8854 1.5117 -0.0008 5 7 4.5290 0.3811 -0.0007 6 7 5.7892 0.4235 -0.0008 7 6 6.3560 1.5921 -0.0015 8 7 7.7266 1.8393 -0.0012 9 6 8.5970 0.8102 -0.0008 10 8 8.1865 -0.3312 -0.0001 11 6 10.0800 1.0776 0.0001 12 1 10.2983 1.9169 -0.6603 13 7 10.7932 -0.1163 -0.4732 14 6 10.5367 1.4146 1.4210 15 6 12.0153 1.8074 1.4017 16 6 12.4652 2.1388 2.8014 17 1 11.7653 2.0799 3.6217 18 6 13.7691 2.5222 3.0337 19 7 14.6200 2.5992 2.0338 20 14 14.3269 2.9322 4.7686 21 1 14.1409 1.7457 5.6418 22 1 15.7620 3.3136 4.7499 23 1 13.5213 4.0641 5.2932 24 16 5.0797 2.8111 0.0052 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 8.0549 2.7521 -0.0014 31 1 11.7844 0.0586 -0.5431 32 1 10.6070 -0.9087 0.1230 33 1 10.4003 0.5441 2.0626 34 1 9.9450 2.2455 1.8053 35 1 12.1517 2.6780 0.7602 36 1 12.6070 0.9766 1.0175 37 1 15.5371 2.8693 2.1973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424076224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:43 Heat of formation + Delta-G solvation = -3.948936 kcal Electronic energy + Delta-G solvation = -20716.728500 eV Core-core repulsion = 17360.346493 eV Total energy + Delta-G solvation = -3356.382007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.36106 -41.07387 -37.30470 -36.44967 -34.86658 -33.78163 -31.99069 -31.72315 -28.82208 -27.37421 -25.77847 -24.49131 -23.62633 -22.13167 -21.27929 -20.53321 -19.11696 -18.86777 -18.17407 -17.32738 -17.27813 -16.58790 -16.17030 -16.11569 -16.01335 -15.65106 -15.63095 -14.85354 -14.75730 -14.66106 -14.09998 -13.53218 -13.40340 -13.12291 -13.08005 -12.90560 -12.72863 -12.56099 -12.35554 -11.97900 -11.87321 -11.81784 -11.68258 -11.32968 -11.25753 -11.24141 -10.82163 -10.55190 -10.23897 -9.73423 -8.76451 -8.21407 -6.31101 -0.87540 -0.85493 -0.18064 0.19378 1.04464 1.10206 1.40493 1.41408 1.49243 1.58045 1.63764 2.39791 3.11646 3.13138 3.64489 3.73714 3.81947 3.95964 3.99377 4.04055 4.14386 4.50306 4.60818 4.76998 4.80031 4.89074 4.90281 5.06089 5.22936 5.46947 5.65385 5.77574 5.81132 6.07195 6.20980 6.42308 6.75992 6.84145 7.37845 7.43064 8.88816 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.025990 B = 0.002341 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.078646 B =11955.358229 C =12426.842600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 S 0.035 5.965 4 C -0.037 4.037 5 N -0.270 5.270 6 N -0.302 5.302 7 C 0.240 3.760 8 N -0.613 5.613 9 C 0.524 3.476 10 O -0.504 6.504 11 C 0.093 3.907 12 H 0.128 0.872 13 N -0.831 5.831 14 C -0.125 4.125 15 C 0.030 3.970 16 C -0.545 4.545 17 H 0.054 0.946 18 C 0.007 3.993 19 N -0.924 5.924 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.267 1.267 24 S 0.189 5.811 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.445 0.555 31 H 0.359 0.641 32 H 0.345 0.655 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.009 0.991 36 H 0.005 0.995 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.672 2.927 -5.775 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.262 4.262 3 S 0.263 5.737 4 C -0.426 4.426 5 N -0.112 5.112 6 N -0.146 5.146 7 C -0.134 4.134 8 N -0.268 5.268 9 C 0.308 3.692 10 O -0.373 6.373 11 C -0.022 4.022 12 H 0.145 0.855 13 N -0.363 5.363 14 C -0.165 4.165 15 C -0.007 4.007 16 C -0.583 4.583 17 H 0.072 0.928 18 C -0.192 4.192 19 N -0.564 5.564 20 Si 0.781 3.219 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.192 1.192 24 S 0.426 5.574 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.287 0.713 31 H 0.176 0.824 32 H 0.158 0.842 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.027 0.973 36 H 0.023 0.977 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.708 2.859 -6.487 28.601 hybrid contribution 2.340 -0.612 1.769 2.997 sum -25.368 2.247 -4.719 25.901 Atomic orbital electron populations 1.21595 0.89137 1.04691 1.03950 1.23778 1.01699 0.93810 1.06887 1.85341 0.84654 1.13726 1.89972 1.31677 1.07963 0.93955 1.08995 1.71638 0.99195 1.23072 1.17298 1.71239 1.01945 1.20987 1.20426 1.27168 0.92197 0.92201 1.01875 1.43117 0.99248 1.12746 1.71704 1.21493 0.89125 0.84291 0.74241 1.90789 1.79471 1.22375 1.44650 1.21394 0.86862 0.96259 0.97730 0.85450 1.58737 1.15194 1.05264 1.57136 1.22209 0.98923 1.01140 0.94200 1.18975 0.90332 0.95669 0.95750 1.21582 0.95846 1.45852 0.95058 0.92763 1.25822 0.97077 0.95442 1.00874 1.70038 1.05041 1.48564 1.32753 0.85641 0.77239 0.78867 0.80147 1.19871 1.20922 1.19217 1.85374 0.94315 1.05392 1.72279 0.90672 0.88727 0.90765 0.89022 0.89155 0.71290 0.82443 0.84159 0.93602 0.90932 0.97259 0.97705 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.92 71.98 0.71 -0.23 16 2 C -0.11 -1.48 6.30 71.98 0.45 -1.02 16 3 S 0.03 0.54 22.16 -56.49 -1.25 -0.71 16 4 C -0.04 -0.85 7.90 130.50 1.03 0.18 16 5 N -0.27 -8.26 11.17 -54.95 -0.61 -8.88 16 6 N -0.30 -10.47 9.78 -55.66 -0.54 -11.01 16 7 C 0.24 6.65 8.42 179.04 1.51 8.15 16 8 N -0.61 -15.39 5.41 -309.02 -1.67 -17.07 16 9 C 0.52 16.74 7.04 87.65 0.62 17.36 16 10 O -0.50 -20.34 14.97 -3.09 -0.05 -20.38 16 11 C 0.09 2.86 3.21 44.17 0.14 3.01 16 12 H 0.13 3.33 8.14 -2.38 -0.02 3.31 16 13 N -0.83 -26.99 8.94 -171.79 -1.54 -28.52 16 14 C -0.12 -4.51 4.78 30.60 0.15 -4.36 16 15 C 0.03 1.38 4.74 29.85 0.14 1.52 16 16 C -0.55 -28.91 9.11 25.60 0.23 -28.68 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 18 C 0.01 0.36 5.46 84.66 0.46 0.82 16 19 N -0.92 -52.79 13.29 21.45 0.28 -52.51 16 20 Si 0.96 42.54 29.54 68.60 2.03 44.56 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 S 0.19 3.67 23.53 -56.49 -1.33 2.34 16 25 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.44 7.44 8.82 -92.70 -0.82 6.63 16 31 H 0.36 11.64 7.55 -89.69 -0.68 10.97 16 32 H 0.35 11.66 8.58 -89.70 -0.77 10.89 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.00 0.23 6.87 -2.39 -0.02 0.21 16 37 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -71.87 348.14 -0.36 -72.23 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -1.13 Total: 23.20 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.45 Total: -3.25 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -4.08 Total: -117.99 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.58 Total: 1.63 kcal Total: -71.87 -0.36 -72.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424076224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.283 kcal (2) G-P(sol) polarization free energy of solvation -71.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds