Wall clock time and date at job start Tue Mar 31 2020 11:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81005 * 109.46791 * 2 1 4 4 C 1.76196 * 99.99916 * 179.97438 * 3 2 1 5 5 N 1.28601 * 125.02356 * 359.97159 * 4 3 2 6 6 N 1.37792 * 116.17167 * 180.02562 * 5 4 3 7 7 H 0.96994 * 122.70769 * 180.02562 * 6 5 4 8 8 C 1.33664 * 114.57744 * 359.97438 * 6 5 4 9 9 N 1.33233 * 125.64816 * 179.97438 * 8 6 5 10 10 C 1.33544 * 119.99827 * 180.02562 * 9 8 6 11 11 O 1.21893 * 120.00044 * 0.02562 * 10 9 8 12 12 N 1.34768 * 119.99826 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00360 * 359.97438 * 12 10 9 14 14 C 1.46505 * 119.99967 * 180.02562 * 12 10 9 15 15 H 1.09002 * 109.47068 * 0.02562 * 14 12 10 16 16 C 1.52997 * 109.47212 * 240.00033 * 14 12 10 17 17 C 1.50699 * 109.47262 * 119.99946 * 14 12 10 18 18 H 1.08000 * 119.99792 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99902 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00126 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99745 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47319 * 60.00570 * 21 19 17 23 23 H 1.48503 * 109.46734 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47266 * 300.00384 * 21 19 17 25 25 S 1.75930 * 125.02159 * 180.28070 * 4 3 2 26 26 H 1.08996 * 109.47474 * 300.00504 * 1 2 3 27 27 H 1.09003 * 109.46949 * 60.00381 * 1 2 3 28 28 H 1.08999 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47393 * 240.00267 * 2 1 3 30 30 H 1.08992 * 109.47027 * 119.99141 * 2 1 3 31 31 H 1.08992 * 109.47421 * 270.00115 * 13 12 10 32 32 H 1.09007 * 109.46720 * 30.00124 * 13 12 10 33 33 H 1.09003 * 109.47218 * 149.99905 * 13 12 10 34 34 H 1.08998 * 109.47533 * 59.99637 * 16 14 12 35 35 H 1.08996 * 109.47853 * 179.97438 * 16 14 12 36 36 H 1.09002 * 109.47153 * 300.00008 * 16 14 12 37 37 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7066 0.0000 4 6 3.8712 1.4167 0.0008 5 7 4.4260 0.2565 0.0017 6 7 5.8038 0.2417 0.0027 7 1 6.3191 -0.5801 0.0031 8 6 6.3728 1.4512 0.0021 9 7 7.6830 1.6929 0.0033 10 6 8.1298 2.9514 0.0030 11 8 7.3389 3.8789 0.0020 12 7 9.4551 3.1959 0.0048 13 6 10.4057 2.0812 0.0076 14 6 9.9452 4.5766 0.0050 15 1 9.0983 5.2628 0.0040 16 6 10.7973 4.8154 -1.2432 17 6 10.7810 4.8127 1.2365 18 1 10.9323 4.0142 1.9477 19 6 11.3534 6.0480 1.4547 20 7 11.1695 7.0203 0.5884 21 14 12.3900 6.3405 2.9810 22 1 13.5435 5.4054 2.9826 23 1 12.8867 7.7400 2.9811 24 1 11.5633 6.1089 4.1927 25 16 5.1041 2.6717 0.0082 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 10.6398 1.8060 1.0359 32 1 9.9650 1.2267 -0.5059 33 1 11.3194 2.3816 -0.5052 34 1 10.1928 4.6446 -2.1340 35 1 11.1616 5.8427 -1.2433 36 1 11.6442 4.1292 -1.2417 37 1 11.5718 7.8894 0.7421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444496235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:06 Heat of formation + Delta-G solvation = 54.853005 kcal Electronic energy + Delta-G solvation = -21389.757668 eV Core-core repulsion = 18035.925505 eV Total energy + Delta-G solvation = -3353.832163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.24680 -39.27331 -35.77031 -34.11215 -33.29290 -32.79762 -31.46258 -29.21746 -26.18360 -25.48149 -25.13487 -24.16299 -22.61919 -21.64284 -19.72862 -18.21533 -17.06845 -16.93682 -16.71635 -16.13338 -15.89289 -15.72159 -15.36880 -15.21947 -14.54296 -14.45599 -13.32882 -12.90828 -12.68650 -12.66923 -12.59232 -12.41966 -12.09676 -11.63752 -11.52156 -11.38679 -11.10316 -11.00580 -10.86668 -10.78151 -10.57463 -10.22021 -10.12928 -10.05378 -9.99941 -9.17882 -8.89459 -8.47765 -8.39198 -8.03803 -7.40564 -6.03975 -4.11679 0.52658 0.82160 0.88900 1.36493 1.38805 1.72134 2.54379 3.31034 3.35383 3.37904 3.88456 4.15315 4.41687 4.45007 4.47245 4.61892 4.92803 5.26733 5.29558 5.31421 5.37413 5.59196 6.05587 6.28312 6.48114 6.56119 6.78176 6.82251 6.89009 7.08829 7.38576 7.49609 7.61258 7.77303 8.04999 8.22549 8.57790 8.87573 9.22571 9.55063 11.01300 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028665 B = 0.002853 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.564651 B = 9812.717243 C =10136.229897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 S 0.038 5.962 4 C -0.023 4.023 5 N -0.242 5.242 6 N -0.484 5.484 7 H 0.449 0.551 8 C 0.382 3.618 9 N -0.600 5.600 10 C 0.660 3.340 11 O -0.592 6.592 12 N -0.566 5.566 13 C 0.101 3.899 14 C 0.266 3.734 15 H 0.065 0.935 16 C -0.147 4.147 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 S 0.210 5.790 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.011 0.989 35 H 0.095 0.905 36 H 0.031 0.969 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.238 -15.423 -2.725 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.273 4.273 3 S 0.263 5.737 4 C -0.428 4.428 5 N -0.065 5.065 6 N -0.215 5.215 7 H 0.297 0.703 8 C -0.002 4.002 9 N -0.357 5.357 10 C 0.358 3.642 11 O -0.476 6.476 12 N -0.295 5.295 13 C -0.043 4.043 14 C 0.165 3.835 15 H 0.083 0.917 16 C -0.205 4.205 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.203 1.203 25 S 0.438 5.562 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.564 -13.732 -2.754 23.254 hybrid contribution 1.743 -1.659 0.875 2.560 sum -16.821 -15.391 -1.879 22.877 Atomic orbital electron populations 1.21569 0.91617 1.03418 1.03385 1.23649 1.00335 0.96119 1.07188 1.86000 0.86081 1.10616 1.90976 1.30256 1.08051 0.99671 1.04843 1.74559 0.89823 1.20872 1.21203 1.45488 1.01472 1.07045 1.67489 0.70327 1.25459 0.94503 0.89744 0.90478 1.68292 1.05880 1.24749 1.36745 1.16709 0.84968 0.83417 0.79071 1.90714 1.53266 1.45807 1.57781 1.47302 1.02080 1.09699 1.70459 1.21425 0.93203 0.88780 1.00925 1.19003 0.94912 0.75349 0.94219 0.91714 1.22103 0.98537 1.04176 0.95692 1.21282 1.31316 0.97462 1.06257 0.92305 1.24883 0.96366 0.95733 0.96777 1.69869 1.44509 1.02989 1.35311 0.86530 0.80376 0.77170 0.83156 1.20221 1.21143 1.20269 1.88118 0.89508 1.00988 1.77586 0.91373 0.91389 0.90407 0.88566 0.88560 0.93733 0.92048 0.91437 0.96946 0.88608 0.94974 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 9.92 37.16 0.37 -0.24 16 2 C -0.12 -0.78 5.87 37.16 0.22 -0.56 16 3 S 0.04 0.34 22.31 -107.50 -2.40 -2.06 16 4 C -0.02 -0.28 7.70 51.41 0.40 0.11 16 5 N -0.24 -2.87 11.26 30.92 0.35 -2.53 16 6 N -0.48 -6.10 6.81 30.44 0.21 -5.90 16 7 H 0.45 4.42 8.96 -184.31 -1.65 2.76 16 8 C 0.38 6.31 8.37 -89.28 -0.75 5.56 16 9 N -0.60 -11.65 9.22 -16.97 -0.16 -11.81 16 10 C 0.66 15.45 8.18 -88.02 -0.72 14.73 16 11 O -0.59 -15.04 13.01 5.02 0.07 -14.97 16 12 N -0.57 -13.44 2.75 -181.31 -0.50 -13.94 16 13 C 0.10 1.97 9.65 59.85 0.58 2.55 16 14 C 0.27 7.13 2.64 -69.08 -0.18 6.94 16 15 H 0.07 1.98 6.89 -51.93 -0.36 1.62 16 16 C -0.15 -3.65 8.95 37.16 0.33 -3.31 16 17 C -0.52 -14.73 8.37 -34.44 -0.29 -15.02 16 18 H 0.06 1.65 7.64 -52.49 -0.40 1.24 16 19 C 0.06 1.81 5.30 -17.82 -0.09 1.71 16 20 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 21 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 S 0.21 3.34 20.30 -107.50 -2.18 1.16 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.07 7.31 -51.92 -0.38 0.69 16 33 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 36 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -32.62 338.05 -9.93 -42.56 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.88 Total: -1.69 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -0.14 Total: 12.48 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.53 Total: -59.10 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.07 Total: -14.97 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -4.58 Total: -0.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.62 -9.93 -42.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444496235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.412 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds