Wall clock time and date at job start Tue Mar 31 2020 11:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81005 * 109.46791 * 2 1 4 4 C 1.76196 * 99.99916 * 179.97438 * 3 2 1 5 5 N 1.28601 * 125.02356 * 359.97159 * 4 3 2 6 6 N 1.37792 * 116.17167 * 180.02562 * 5 4 3 7 7 H 0.96994 * 122.70769 * 180.02562 * 6 5 4 8 8 C 1.33664 * 114.57744 * 359.97438 * 6 5 4 9 9 N 1.33233 * 125.64816 * 179.97438 * 8 6 5 10 10 C 1.33544 * 119.99827 * 180.02562 * 9 8 6 11 11 O 1.21893 * 120.00044 * 0.02562 * 10 9 8 12 12 N 1.34768 * 119.99826 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00360 * 359.97438 * 12 10 9 14 14 C 1.46505 * 119.99967 * 180.02562 * 12 10 9 15 15 H 1.09002 * 109.47068 * 0.02562 * 14 12 10 16 16 C 1.52997 * 109.47212 * 240.00033 * 14 12 10 17 17 C 1.50699 * 109.47262 * 119.99946 * 14 12 10 18 18 H 1.08000 * 119.99792 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99902 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00126 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99745 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47319 * 60.00570 * 21 19 17 23 23 H 1.48503 * 109.46734 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47266 * 300.00384 * 21 19 17 25 25 S 1.75930 * 125.02159 * 180.28070 * 4 3 2 26 26 H 1.08996 * 109.47474 * 300.00504 * 1 2 3 27 27 H 1.09003 * 109.46949 * 60.00381 * 1 2 3 28 28 H 1.08999 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47393 * 240.00267 * 2 1 3 30 30 H 1.08992 * 109.47027 * 119.99141 * 2 1 3 31 31 H 1.08992 * 109.47421 * 270.00115 * 13 12 10 32 32 H 1.09007 * 109.46720 * 30.00124 * 13 12 10 33 33 H 1.09003 * 109.47218 * 149.99905 * 13 12 10 34 34 H 1.08998 * 109.47533 * 59.99637 * 16 14 12 35 35 H 1.08996 * 109.47853 * 179.97438 * 16 14 12 36 36 H 1.09002 * 109.47153 * 300.00008 * 16 14 12 37 37 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7066 0.0000 4 6 3.8712 1.4167 0.0008 5 7 4.4260 0.2565 0.0017 6 7 5.8038 0.2417 0.0027 7 1 6.3191 -0.5801 0.0031 8 6 6.3728 1.4512 0.0021 9 7 7.6830 1.6929 0.0033 10 6 8.1298 2.9514 0.0030 11 8 7.3389 3.8789 0.0020 12 7 9.4551 3.1959 0.0048 13 6 10.4057 2.0812 0.0076 14 6 9.9452 4.5766 0.0050 15 1 9.0983 5.2628 0.0040 16 6 10.7973 4.8154 -1.2432 17 6 10.7810 4.8127 1.2365 18 1 10.9323 4.0142 1.9477 19 6 11.3534 6.0480 1.4547 20 7 11.1695 7.0203 0.5884 21 14 12.3900 6.3405 2.9810 22 1 13.5435 5.4054 2.9826 23 1 12.8867 7.7400 2.9811 24 1 11.5633 6.1089 4.1927 25 16 5.1041 2.6717 0.0082 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 10.6398 1.8060 1.0359 32 1 9.9650 1.2267 -0.5059 33 1 11.3194 2.3816 -0.5052 34 1 10.1928 4.6446 -2.1340 35 1 11.1616 5.8427 -1.2433 36 1 11.6442 4.1292 -1.2417 37 1 11.5718 7.8894 0.7421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444496235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:05 Heat of formation + Delta-G solvation = 33.038040 kcal Electronic energy + Delta-G solvation = -21390.703636 eV Core-core repulsion = 18035.925505 eV Total energy + Delta-G solvation = -3354.778131 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53299 -40.82660 -37.56685 -35.54590 -34.79579 -33.77068 -32.77550 -31.13343 -27.75632 -27.32728 -26.76157 -24.74767 -23.91976 -23.08298 -21.33291 -19.69903 -18.63649 -18.32369 -17.97604 -17.77118 -17.39455 -17.18814 -16.51116 -16.15773 -16.07873 -15.61163 -15.12345 -14.55073 -14.22651 -13.82018 -13.50250 -13.36300 -13.16835 -13.10682 -13.04971 -12.94521 -12.73163 -12.67893 -12.29087 -12.24832 -12.19541 -12.00033 -11.75863 -11.30296 -11.27773 -11.20676 -10.61351 -10.44095 -9.88164 -9.20910 -8.85329 -8.15007 -6.31988 -0.59880 -0.43829 -0.14009 0.16547 0.18915 1.02887 1.35248 1.41193 1.43649 1.51426 2.27612 2.46213 2.51038 3.12077 3.36597 3.96318 4.02111 4.02400 4.50231 4.54814 4.70335 4.77817 4.86935 4.93004 4.93353 5.01606 5.04246 5.27660 5.34064 5.49568 5.54175 5.65053 5.67667 6.00464 6.13103 6.18243 6.73904 6.77860 7.33659 7.57663 8.89105 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.028665 B = 0.002853 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.564651 B = 9812.717243 C =10136.229897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 S 0.052 5.948 4 C -0.010 4.010 5 N -0.232 5.232 6 N -0.461 5.461 7 H 0.463 0.537 8 C 0.385 3.615 9 N -0.613 5.613 10 C 0.653 3.347 11 O -0.631 6.631 12 N -0.581 5.581 13 C 0.105 3.895 14 C 0.272 3.728 15 H 0.015 0.985 16 C -0.131 4.131 17 C -0.541 4.541 18 H 0.055 0.945 19 C 0.017 3.983 20 N -0.915 5.915 21 Si 0.967 3.033 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.278 1.278 25 S 0.168 5.832 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.019 0.981 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.484 -17.732 -2.246 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.268 4.268 3 S 0.278 5.722 4 C -0.415 4.415 5 N -0.055 5.055 6 N -0.192 5.192 7 H 0.314 0.686 8 C 0.001 3.999 9 N -0.373 5.373 10 C 0.351 3.649 11 O -0.516 6.516 12 N -0.311 5.311 13 C -0.038 4.038 14 C 0.170 3.830 15 H 0.033 0.967 16 C -0.190 4.190 17 C -0.579 4.579 18 H 0.073 0.927 19 C -0.182 4.182 20 N -0.554 5.554 21 Si 0.791 3.209 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.204 1.204 25 S 0.398 5.602 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.860 -16.118 -2.283 25.680 hybrid contribution 1.735 -1.064 0.702 2.153 sum -18.125 -17.183 -1.581 25.025 Atomic orbital electron populations 1.21612 0.89768 1.04730 1.03713 1.23835 1.01673 0.93681 1.07656 1.86144 0.83131 1.13360 1.89572 1.30544 1.09229 0.97770 1.03926 1.74631 0.88846 1.20120 1.21909 1.45631 1.01921 1.06471 1.65137 0.68589 1.25538 0.93998 0.90858 0.89484 1.68251 1.07122 1.22245 1.39703 1.17028 0.84694 0.84452 0.78697 1.90700 1.54307 1.47416 1.59198 1.47215 1.03119 1.09332 1.71388 1.21531 0.92677 0.88232 1.01332 1.18613 0.93032 0.76574 0.94784 0.96712 1.21888 0.98756 1.03126 0.95224 1.21488 1.31801 0.97806 1.06843 0.92657 1.25719 0.97432 0.95345 0.99749 1.70003 1.45130 1.03332 1.36908 0.85489 0.78892 0.77479 0.79019 1.18794 1.20443 1.20410 1.88293 0.91244 1.02998 1.77690 0.91115 0.91054 0.88498 0.88039 0.88136 0.93684 0.89769 0.91094 0.96212 0.90780 0.93385 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.92 71.98 0.71 -0.03 16 2 C -0.12 -1.13 5.87 71.98 0.42 -0.71 16 3 S 0.05 0.83 22.31 -56.49 -1.26 -0.43 16 4 C -0.01 -0.24 7.70 130.72 1.01 0.77 16 5 N -0.23 -5.00 11.26 -56.07 -0.63 -5.63 16 6 N -0.46 -10.84 6.81 -57.60 -0.39 -11.23 16 7 H 0.46 8.08 8.96 -214.78 -1.93 6.16 16 8 C 0.38 12.56 8.37 179.88 1.51 14.07 16 9 N -0.61 -23.93 9.22 -326.44 -3.01 -26.94 16 10 C 0.65 31.51 8.18 179.44 1.47 32.98 16 11 O -0.63 -33.63 13.01 -4.97 -0.06 -33.69 16 12 N -0.58 -28.27 2.75 -845.70 -2.33 -30.59 16 13 C 0.10 4.08 9.65 127.77 1.23 5.31 16 14 C 0.27 15.14 2.64 44.24 0.12 15.26 16 15 H 0.01 0.97 6.89 -2.39 -0.02 0.95 16 16 C -0.13 -6.69 8.95 71.98 0.64 -6.05 16 17 C -0.54 -31.03 8.37 25.60 0.21 -30.81 16 18 H 0.06 3.14 7.64 -2.91 -0.02 3.11 16 19 C 0.02 0.98 5.30 84.65 0.45 1.43 16 20 N -0.92 -53.83 11.32 21.45 0.24 -53.58 16 21 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 S 0.17 5.40 20.30 -56.49 -1.15 4.25 16 26 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.10 0.94 8.14 -2.40 -0.02 0.92 16 30 H 0.10 0.95 8.14 -2.40 -0.02 0.93 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 2.85 7.31 -2.38 -0.02 2.83 16 33 H 0.07 2.66 6.43 -2.39 -0.02 2.64 16 34 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 36 H 0.05 2.23 6.66 -2.39 -0.02 2.21 16 37 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -72.80 338.05 0.39 -72.41 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -0.81 Total: 6.82 kcal Atomic # 6 Polarization: 24.45 SS G_CDS: 7.77 Total: 32.22 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -6.12 Total: -127.98 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.06 Total: -33.69 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -2.41 Total: 3.82 kcal Total: -72.80 0.39 -72.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444496235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.443 kcal (2) G-P(sol) polarization free energy of solvation -72.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds