Wall clock time and date at job start Tue Mar 31 2020 11:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47324 * 198.31574 * 3 2 1 5 5 C 1.36946 * 119.99886 * 264.59292 * 4 3 2 6 6 H 1.07993 * 119.99954 * 135.93632 * 5 4 3 7 7 C 1.38976 * 119.99860 * 315.93425 * 5 4 3 8 8 N 1.31418 * 119.99983 * 348.97623 * 7 5 4 9 9 Si 1.86797 * 119.99901 * 168.97285 * 7 5 4 10 10 H 1.48493 * 109.47191 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46832 * 120.00501 * 9 7 5 12 12 H 1.48507 * 109.47168 * 240.00075 * 9 7 5 13 13 C 1.34777 * 119.99986 * 84.58462 * 4 3 2 14 14 O 1.21672 * 120.00209 * 4.58905 * 13 4 3 15 15 C 1.47163 * 119.99785 * 184.58666 * 13 4 3 16 16 C 1.35179 * 122.44371 * 174.69761 * 15 13 4 17 17 S 1.71002 * 109.13501 * 180.02562 * 16 15 13 18 18 C 1.75989 * 90.60242 * 0.02562 * 17 16 15 19 19 C 1.47919 * 125.31184 * 180.02562 * 18 17 16 20 20 C 1.41040 * 126.26625 * 179.97438 * 19 18 17 21 21 N 1.30618 * 108.06285 * 180.02562 * 20 19 18 22 22 N 1.39994 * 108.59367 * 0.02562 * 21 20 19 23 23 C 1.46502 * 125.85522 * 179.73481 * 22 21 20 24 24 C 1.34697 * 108.28879 * 359.97438 * 22 21 20 25 25 N 1.29857 * 109.38188 * 0.26348 * 18 17 16 26 26 H 4.40645 * 5.51389 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47716 * 78.31497 * 3 2 1 28 28 H 1.09010 * 109.47239 * 318.31195 * 3 2 1 29 29 H 0.97001 * 120.00063 * 179.97438 * 8 7 5 30 30 H 1.08003 * 125.43419 * 0.02562 * 16 15 13 31 31 H 1.08005 * 125.97154 * 0.07422 * 20 19 18 32 32 H 1.09003 * 109.46872 * 90.02586 * 23 22 21 33 33 H 1.09001 * 109.47181 * 210.02384 * 23 22 21 34 34 H 1.09001 * 109.46894 * 330.02606 * 23 22 21 35 35 H 1.07997 * 126.21032 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3121 0.4341 5 6 3.4670 2.2608 -0.4957 6 1 3.1517 3.2846 -0.3593 7 6 4.2108 1.9059 -1.6147 8 7 4.7776 0.7219 -1.6785 9 14 4.4049 3.1117 -3.0280 10 1 3.6756 4.3661 -2.7122 11 1 5.8453 3.4137 -3.2268 12 1 3.8487 2.5141 -4.2686 13 6 3.2544 1.5850 1.7484 14 8 3.0385 0.7163 2.5725 15 6 3.6474 2.9338 2.1867 16 6 3.6819 3.2914 3.4899 17 16 4.1805 4.9227 3.6104 18 6 4.3156 5.0302 1.8590 19 6 4.7328 6.2330 1.1059 20 6 4.8483 6.3414 -0.2956 21 7 5.2417 7.5548 -0.5769 22 7 5.3927 8.2640 0.6206 23 6 5.8247 9.6585 0.7435 24 6 5.0777 7.4428 1.6408 25 7 3.9871 3.8904 1.3307 26 1 -1.0502 -0.0005 0.0000 27 1 3.0095 -0.2073 -1.0063 28 1 3.0097 -0.7667 0.6835 29 1 5.2964 0.4741 -2.4597 30 1 3.4341 2.6493 4.3222 31 1 4.6461 5.5582 -1.0113 32 1 4.9532 10.3126 0.7151 33 1 6.3502 9.7941 1.6888 34 1 6.4920 9.9061 -0.0820 35 1 5.0952 7.6942 2.6910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490963361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:13 Heat of formation + Delta-G solvation = 170.326146 kcal Electronic energy + Delta-G solvation = -23217.848709 eV Core-core repulsion = 19733.579885 eV Total energy + Delta-G solvation = -3484.268824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18237 -39.54938 -37.58820 -35.04818 -33.51147 -32.41886 -31.36923 -31.13035 -29.16833 -27.09687 -26.83888 -25.02083 -24.05689 -21.98306 -21.19277 -19.92469 -18.75808 -18.08128 -17.77974 -16.91223 -16.46965 -15.61236 -15.20858 -14.93592 -14.65149 -14.44795 -14.23585 -13.92617 -13.57509 -13.38248 -13.03200 -12.84058 -12.70630 -12.48980 -12.15926 -12.00117 -11.50499 -11.34606 -11.04585 -10.93692 -10.68009 -10.30925 -9.73339 -9.62545 -9.49607 -9.40929 -9.11584 -8.93450 -8.82781 -8.49471 -7.72434 -7.43823 -6.30953 -4.00670 0.86682 1.68758 1.83775 2.09077 2.40490 2.54981 3.17178 3.27493 3.30777 3.36451 3.53147 3.73414 4.18368 4.21454 4.45098 4.60601 4.71272 4.90942 4.96155 5.03527 5.15477 5.28898 5.42247 5.47667 5.65971 5.81331 5.91168 6.13136 6.52949 6.61989 6.77340 6.79184 6.81186 7.08209 7.62835 7.66970 7.89246 8.23121 8.46563 8.56090 9.12839 9.41005 9.84758 10.74830 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.005533 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.501982 B = 5059.312775 C = 6728.079376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.153 4.153 3 C 0.209 3.791 4 N -0.413 5.413 5 C -0.305 4.305 6 H 0.118 0.882 7 C 0.039 3.961 8 N -0.876 5.876 9 Si 0.913 3.087 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.535 3.465 14 O -0.596 6.596 15 C 0.064 3.936 16 C -0.236 4.236 17 S 0.088 5.912 18 C 0.128 3.872 19 C -0.162 4.162 20 C 0.101 3.899 21 N -0.299 5.299 22 N -0.373 5.373 23 C 0.102 3.898 24 C 0.078 3.922 25 N -0.385 5.385 26 H 0.208 0.792 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.269 0.731 30 H 0.181 0.819 31 H 0.195 0.805 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 15.165 5.843 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.154 4.154 3 C 0.087 3.913 4 N -0.129 5.129 5 C -0.434 4.434 6 H 0.135 0.865 7 C -0.165 4.165 8 N -0.514 5.514 9 Si 0.740 3.260 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.322 3.678 14 O -0.482 6.482 15 C -0.071 4.071 16 C -0.378 4.378 17 S 0.345 5.655 18 C -0.150 4.150 19 C -0.178 4.178 20 C -0.088 4.088 21 N -0.119 5.119 22 N -0.153 5.153 23 C -0.039 4.039 24 C -0.074 4.074 25 N -0.098 5.098 26 H 0.225 0.775 27 H 0.149 0.851 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.198 0.802 31 H 0.212 0.788 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.889 16.173 5.442 17.169 hybrid contribution -0.471 -0.965 -0.320 1.120 sum 1.419 15.208 5.123 16.111 Atomic orbital electron populations 1.24589 0.95610 1.02318 1.04939 1.24355 0.95459 0.98466 0.97150 1.18553 0.81406 0.87042 1.04290 1.43252 1.53142 1.12757 1.03714 1.20140 1.31087 0.91822 1.00370 0.86462 1.25493 0.94540 0.96788 0.99687 1.69822 1.31263 1.20582 1.29745 0.86092 0.78331 0.80812 0.80787 1.18602 1.20447 1.20750 1.17452 0.81528 0.85247 0.83567 1.90658 1.57362 1.46822 1.53369 1.20321 1.02978 0.95860 0.87907 1.26191 1.10196 0.99672 1.01738 1.83229 1.63560 1.07845 1.10859 1.25364 1.03536 0.95199 0.90903 1.17772 1.15698 0.91447 0.92850 1.24265 0.95385 0.94199 0.94997 1.77345 1.24061 1.06048 1.04407 1.48341 1.51808 1.11165 1.04018 1.21881 1.01105 0.76761 1.04140 1.22409 0.99917 0.90259 0.94770 1.67804 1.11138 0.97834 1.33047 0.77550 0.85134 0.89906 0.92100 0.80180 0.78799 0.90579 0.89383 0.89097 0.80374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.18 19.25 29.55 0.57 -4.61 16 2 C -0.15 -3.57 13.62 -37.12 -0.51 -4.07 16 3 C 0.21 5.23 5.37 -6.83 -0.04 5.19 16 4 N -0.41 -10.89 2.46 -119.25 -0.29 -11.18 16 5 C -0.31 -7.96 7.75 -14.99 -0.12 -8.07 16 6 H 0.12 3.03 5.80 -52.49 -0.30 2.73 16 7 C 0.04 1.00 5.10 -17.46 -0.09 0.91 16 8 N -0.88 -23.37 11.39 55.50 0.63 -22.73 16 9 Si 0.91 19.98 29.06 -169.99 -4.94 15.05 16 10 H -0.26 -5.45 6.76 56.52 0.38 -5.07 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.54 13.94 7.54 -12.64 -0.10 13.84 16 14 O -0.60 -16.32 16.30 5.21 0.08 -16.23 16 15 C 0.06 1.46 6.49 -84.92 -0.55 0.91 16 16 C -0.24 -4.42 10.56 29.64 0.31 -4.10 16 17 S 0.09 1.28 22.96 -107.50 -2.47 -1.18 16 18 C 0.13 2.27 7.46 -14.42 -0.11 2.16 16 19 C -0.16 -2.54 6.09 -105.43 -0.64 -3.18 16 20 C 0.10 1.71 11.97 -17.01 -0.20 1.51 16 21 N -0.30 -4.65 12.53 30.84 0.39 -4.26 16 22 N -0.37 -4.38 4.00 -67.85 -0.27 -4.65 16 23 C 0.10 0.65 11.45 59.85 0.69 1.33 16 24 C 0.08 0.91 11.25 -16.85 -0.19 0.72 16 25 N -0.38 -8.34 6.89 -8.10 -0.06 -8.40 16 26 H 0.21 3.19 7.80 -54.08 -0.42 2.76 16 27 H 0.13 3.36 5.72 -51.93 -0.30 3.06 16 28 H 0.08 2.08 7.53 -51.92 -0.39 1.68 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 30 H 0.18 3.15 8.00 -52.48 -0.42 2.74 16 31 H 0.20 3.54 7.18 -52.48 -0.38 3.16 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -33.17 333.29 -5.93 -39.10 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -3.06 Total: 6.94 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.97 Total: 2.53 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.40 Total: -51.22 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.08 Total: -16.23 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.94 Total: 15.05 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.47 Total: -1.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.17 -5.93 -39.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.424 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds