Wall clock time and date at job start Tue Mar 31 2020 11:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47324 * 198.31574 * 3 2 1 5 5 C 1.36946 * 119.99886 * 264.59292 * 4 3 2 6 6 H 1.07993 * 119.99954 * 135.93632 * 5 4 3 7 7 C 1.38976 * 119.99860 * 315.93425 * 5 4 3 8 8 N 1.31418 * 119.99983 * 348.97623 * 7 5 4 9 9 Si 1.86797 * 119.99901 * 168.97285 * 7 5 4 10 10 H 1.48493 * 109.47191 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46832 * 120.00501 * 9 7 5 12 12 H 1.48507 * 109.47168 * 240.00075 * 9 7 5 13 13 C 1.34777 * 119.99986 * 84.58462 * 4 3 2 14 14 O 1.21672 * 120.00209 * 4.58905 * 13 4 3 15 15 C 1.47163 * 119.99785 * 184.58666 * 13 4 3 16 16 C 1.35179 * 122.44371 * 174.69761 * 15 13 4 17 17 S 1.71002 * 109.13501 * 180.02562 * 16 15 13 18 18 C 1.75989 * 90.60242 * 0.02562 * 17 16 15 19 19 C 1.47919 * 125.31184 * 180.02562 * 18 17 16 20 20 C 1.41040 * 126.26625 * 179.97438 * 19 18 17 21 21 N 1.30618 * 108.06285 * 180.02562 * 20 19 18 22 22 N 1.39994 * 108.59367 * 0.02562 * 21 20 19 23 23 C 1.46502 * 125.85522 * 179.73481 * 22 21 20 24 24 C 1.34697 * 108.28879 * 359.97438 * 22 21 20 25 25 N 1.29857 * 109.38188 * 0.26348 * 18 17 16 26 26 H 4.40645 * 5.51389 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47716 * 78.31497 * 3 2 1 28 28 H 1.09010 * 109.47239 * 318.31195 * 3 2 1 29 29 H 0.97001 * 120.00063 * 179.97438 * 8 7 5 30 30 H 1.08003 * 125.43419 * 0.02562 * 16 15 13 31 31 H 1.08005 * 125.97154 * 0.07422 * 20 19 18 32 32 H 1.09003 * 109.46872 * 90.02586 * 23 22 21 33 33 H 1.09001 * 109.47181 * 210.02384 * 23 22 21 34 34 H 1.09001 * 109.46894 * 330.02606 * 23 22 21 35 35 H 1.07997 * 126.21032 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3121 0.4341 5 6 3.4670 2.2608 -0.4957 6 1 3.1517 3.2846 -0.3593 7 6 4.2108 1.9059 -1.6147 8 7 4.7776 0.7219 -1.6785 9 14 4.4049 3.1117 -3.0280 10 1 3.6756 4.3661 -2.7122 11 1 5.8453 3.4137 -3.2268 12 1 3.8487 2.5141 -4.2686 13 6 3.2544 1.5850 1.7484 14 8 3.0385 0.7163 2.5725 15 6 3.6474 2.9338 2.1867 16 6 3.6819 3.2914 3.4899 17 16 4.1805 4.9227 3.6104 18 6 4.3156 5.0302 1.8590 19 6 4.7328 6.2330 1.1059 20 6 4.8483 6.3414 -0.2956 21 7 5.2417 7.5548 -0.5769 22 7 5.3927 8.2640 0.6206 23 6 5.8247 9.6585 0.7435 24 6 5.0777 7.4428 1.6408 25 7 3.9871 3.8904 1.3307 26 1 -1.0502 -0.0005 0.0000 27 1 3.0095 -0.2073 -1.0063 28 1 3.0097 -0.7667 0.6835 29 1 5.2964 0.4741 -2.4597 30 1 3.4341 2.6493 4.3222 31 1 4.6461 5.5582 -1.0113 32 1 4.9532 10.3126 0.7151 33 1 6.3502 9.7941 1.6888 34 1 6.4920 9.9061 -0.0820 35 1 5.0952 7.6942 2.6910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490963361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:12 Heat of formation + Delta-G solvation = 148.355128 kcal Electronic energy + Delta-G solvation = -23218.801444 eV Core-core repulsion = 19733.579885 eV Total energy + Delta-G solvation = -3485.221558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22649 -41.21898 -39.30676 -37.00547 -34.43861 -34.22435 -33.11971 -32.52028 -30.41219 -28.87284 -27.76462 -26.89512 -25.53880 -23.46559 -22.20367 -21.33212 -20.40867 -19.69918 -19.32036 -18.16244 -18.01585 -17.00653 -16.59146 -16.49797 -16.35308 -15.98611 -15.74344 -15.22179 -15.13987 -14.70860 -14.45919 -14.11482 -13.92244 -13.79942 -13.46485 -13.32548 -13.29112 -12.97522 -12.83890 -12.63402 -12.04120 -11.83109 -11.51638 -11.26610 -10.94413 -10.90223 -10.73260 -10.49315 -10.21208 -10.08186 -9.44748 -8.88517 -8.26319 -6.01811 -0.46653 0.39681 0.68686 0.73564 1.10262 1.42279 1.44060 1.56700 1.59424 1.77178 1.98881 1.99664 2.36162 2.66977 2.94365 3.12857 3.25620 3.73886 3.81878 3.89724 4.18941 4.27741 4.34217 4.51666 4.53371 4.59881 4.71931 4.72778 4.79335 5.07043 5.13136 5.15920 5.41814 5.70015 5.95366 5.99302 6.53492 6.56961 6.75048 6.83395 7.17551 7.47193 7.89365 8.80383 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.005533 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.501982 B = 5059.312775 C = 6728.079376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.225 4.225 3 C 0.215 3.785 4 N -0.427 5.427 5 C -0.308 4.308 6 H 0.118 0.882 7 C -0.002 4.002 8 N -0.909 5.909 9 Si 0.971 3.029 10 H -0.250 1.250 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.521 3.479 14 O -0.627 6.627 15 C 0.024 3.976 16 C -0.249 4.249 17 S 0.227 5.773 18 C 0.115 3.885 19 C -0.199 4.199 20 C 0.077 3.923 21 N -0.323 5.323 22 N -0.361 5.361 23 C 0.088 3.912 24 C 0.113 3.887 25 N -0.434 5.434 26 H 0.259 0.741 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.270 0.730 30 H 0.187 0.813 31 H 0.168 0.832 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 19.247 7.682 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.226 4.226 3 C 0.092 3.908 4 N -0.142 5.142 5 C -0.437 4.437 6 H 0.135 0.865 7 C -0.203 4.203 8 N -0.549 5.549 9 Si 0.795 3.205 10 H -0.174 1.174 11 H -0.205 1.205 12 H -0.205 1.205 13 C 0.309 3.691 14 O -0.515 6.515 15 C -0.111 4.111 16 C -0.391 4.391 17 S 0.486 5.514 18 C -0.162 4.162 19 C -0.216 4.216 20 C -0.112 4.112 21 N -0.144 5.144 22 N -0.141 5.141 23 C -0.050 4.050 24 C -0.041 4.041 25 N -0.148 5.148 26 H 0.275 0.725 27 H 0.133 0.867 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.204 0.796 31 H 0.185 0.815 32 H 0.113 0.887 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.556 20.303 7.271 21.621 hybrid contribution -0.368 -2.021 -0.710 2.174 sum 1.188 18.281 6.561 19.459 Atomic orbital electron populations 1.25654 0.96393 0.98712 1.01151 1.24319 0.95852 1.01831 1.00583 1.18240 0.83274 0.86528 1.02747 1.43495 1.53487 1.13023 1.04194 1.20287 1.31101 0.91877 1.00411 0.86529 1.26229 0.94190 0.98216 1.01622 1.69938 1.32333 1.22172 1.30452 0.85207 0.78157 0.79323 0.77793 1.17385 1.20534 1.20457 1.18098 0.80880 0.86875 0.83243 1.90589 1.58751 1.48284 1.53877 1.19959 1.06543 0.95034 0.89574 1.26538 1.08926 1.03081 1.00604 1.82526 1.60185 1.02694 1.06005 1.25661 1.02162 0.94615 0.93761 1.17904 1.18734 0.92487 0.92428 1.23997 0.96970 0.94487 0.95703 1.77268 1.24661 1.05821 1.06668 1.48827 1.49741 1.12621 1.02895 1.22420 1.02412 0.73837 1.06367 1.23009 0.96280 0.88243 0.96535 1.67655 1.13424 0.99092 1.34611 0.72498 0.86741 0.91787 0.92086 0.79607 0.81483 0.88673 0.85473 0.88926 0.75469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.91 19.25 74.32 1.43 -6.48 16 2 C -0.22 -10.85 13.62 31.12 0.42 -10.43 16 3 C 0.21 11.55 5.37 84.57 0.45 12.00 16 4 N -0.43 -23.96 2.46 -649.41 -1.60 -25.55 16 5 C -0.31 -16.98 7.75 84.07 0.65 -16.33 16 6 H 0.12 6.38 5.80 -2.91 -0.02 6.36 16 7 C 0.00 -0.12 5.10 84.93 0.43 0.32 16 8 N -0.91 -51.43 11.39 21.67 0.25 -51.19 16 9 Si 0.97 42.96 29.06 68.60 1.99 44.95 16 10 H -0.25 -10.46 6.76 99.48 0.67 -9.79 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.52 28.70 7.54 86.59 0.65 29.36 16 14 O -0.63 -36.31 16.30 -4.26 -0.07 -36.38 16 15 C 0.02 1.13 6.49 40.64 0.26 1.40 16 16 C -0.25 -9.14 10.56 67.11 0.71 -8.43 16 17 S 0.23 5.80 22.96 -56.49 -1.30 4.50 16 18 C 0.12 3.94 7.46 87.55 0.65 4.60 16 19 C -0.20 -5.91 6.09 -20.39 -0.12 -6.04 16 20 C 0.08 2.62 11.97 85.56 1.02 3.64 16 21 N -0.32 -9.65 12.53 -56.35 -0.71 -10.36 16 22 N -0.36 -7.14 4.00 -368.59 -1.47 -8.61 16 23 C 0.09 0.69 11.45 127.77 1.46 2.15 16 24 C 0.11 2.13 11.25 83.89 0.94 3.08 16 25 N -0.43 -19.28 6.89 -179.55 -1.24 -20.52 16 26 H 0.26 6.92 7.80 -4.41 -0.03 6.88 16 27 H 0.12 6.40 5.72 -2.39 -0.01 6.39 16 28 H 0.06 3.53 7.53 -2.38 -0.02 3.51 16 29 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.19 6.42 8.00 -2.91 -0.02 6.40 16 31 H 0.17 6.46 7.18 -2.91 -0.02 6.44 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.23 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -80.32 333.29 5.95 -74.37 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 1.11 Total: 19.94 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 8.98 Total: 8.85 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -4.77 Total: -116.23 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.07 Total: -36.38 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.99 Total: 44.95 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.30 Total: 4.50 kcal Total: -80.32 5.95 -74.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.724 kcal (2) G-P(sol) polarization free energy of solvation -80.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds