Wall clock time and date at job start Tue Mar 31 2020 11:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46837 * 184.11854 * 3 2 1 5 5 C 1.36826 * 119.99901 * 93.56685 * 4 3 2 6 6 H 1.08004 * 120.00303 * 169.74149 * 5 4 3 7 7 C 1.39044 * 119.99859 * 349.73719 * 5 4 3 8 8 N 1.31362 * 120.00106 * 333.10676 * 7 5 4 9 9 Si 1.86804 * 119.99815 * 153.10629 * 7 5 4 10 10 H 1.48509 * 109.46881 * 94.99669 * 9 7 5 11 11 H 1.48498 * 109.46981 * 214.99649 * 9 7 5 12 12 H 1.48491 * 109.47229 * 334.99980 * 9 7 5 13 13 C 1.34778 * 120.00430 * 273.55730 * 4 3 2 14 14 O 1.21718 * 120.00588 * 185.30965 * 13 4 3 15 15 C 1.46725 * 119.99743 * 5.32162 * 13 4 3 16 16 C 1.36173 * 125.47051 * 98.78451 * 15 13 4 17 17 Cl 1.73601 * 126.15302 * 0.02562 * 16 15 13 18 18 C 1.41668 * 107.69775 * 179.97438 * 16 15 13 19 19 C 1.40098 * 133.32887 * 180.02562 * 18 16 15 20 20 C 1.36452 * 119.83329 * 180.02562 * 19 18 16 21 21 C 1.38932 * 120.60932 * 0.02562 * 20 19 18 22 22 C 1.37696 * 120.64358 * 0.02562 * 21 20 19 23 23 C 1.39206 * 119.81368 * 359.66780 * 22 21 20 24 24 N 1.37561 * 133.11322 * 179.58065 * 23 22 21 25 25 C 1.46500 * 125.60447 * 0.80021 * 24 23 22 26 26 H 4.40634 * 5.51466 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47060 * 64.12064 * 3 2 1 28 28 H 1.08999 * 109.47327 * 304.12086 * 3 2 1 29 29 H 0.97003 * 120.00684 * 180.02562 * 8 7 5 30 30 H 1.08004 * 120.08535 * 0.02562 * 19 18 16 31 31 H 1.07999 * 119.69629 * 179.97438 * 20 19 18 32 32 H 1.07999 * 119.67517 * 179.97438 * 21 20 19 33 33 H 1.07999 * 120.09006 * 180.02562 * 22 21 20 34 34 H 1.09004 * 109.47283 * 264.79927 * 25 24 23 35 35 H 1.09004 * 109.47097 * 24.80012 * 25 24 23 36 36 H 1.08997 * 109.46912 * 144.79905 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3785 0.0992 5 6 3.4309 1.9125 1.3234 6 1 3.9433 2.8610 1.3888 7 6 3.0732 1.2341 2.4832 8 7 2.0462 0.4151 2.4748 9 14 4.0531 1.4875 4.0533 10 1 3.3970 2.5293 4.8836 11 1 4.1099 0.2125 4.8125 12 1 5.4314 1.9221 3.7119 13 6 3.2896 2.1201 -1.0153 14 8 3.7852 3.2296 -0.9438 15 6 2.8619 1.5902 -2.3149 16 6 1.6879 1.8825 -2.9399 17 17 0.4459 2.9390 -2.3440 18 6 1.6628 1.1704 -4.1643 19 6 0.7295 1.0807 -5.2053 20 6 0.9920 0.2904 -6.2862 21 6 2.1782 -0.4286 -6.3653 22 6 3.1107 -0.3578 -5.3546 23 6 2.8684 0.4466 -4.2447 24 7 3.5855 0.7113 -3.1009 25 6 4.9026 0.1600 -2.7733 26 1 -1.0502 -0.0004 -0.0002 27 1 3.0095 -0.4477 -0.9246 28 1 3.0096 -0.5756 0.8507 29 1 1.7964 -0.0580 3.2840 30 1 -0.1956 1.6356 -5.1524 31 1 0.2708 0.2225 -7.0872 32 1 2.3704 -1.0498 -7.2277 33 1 4.0299 -0.9201 -5.4256 34 1 4.7810 -0.7238 -2.1470 35 1 5.4205 -0.1144 -3.6923 36 1 5.4863 0.9080 -2.2368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490985270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:10 Heat of formation + Delta-G solvation = 83.685590 kcal Electronic energy + Delta-G solvation = -24052.415265 eV Core-core repulsion = 20530.052967 eV Total energy + Delta-G solvation = -3522.362297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.64007 -40.33601 -37.87106 -37.44501 -37.18295 -34.11217 -33.85791 -33.12487 -31.28866 -30.29685 -28.42545 -27.31133 -26.89945 -24.45086 -22.60332 -22.06447 -20.63169 -19.84251 -18.69143 -18.36790 -17.98145 -17.40313 -16.77426 -16.51462 -15.99745 -15.84149 -15.45102 -15.21596 -14.87655 -14.63691 -14.41212 -14.23427 -14.09129 -13.94521 -13.62977 -13.38184 -13.01102 -12.82512 -12.73515 -12.54321 -12.15610 -12.01473 -11.99233 -11.70441 -11.28958 -11.18746 -10.79083 -10.61888 -10.49529 -10.01686 -9.16262 -8.60324 -8.46936 -5.98251 -0.03125 0.67986 0.98458 1.26852 1.33762 1.43407 1.54626 1.60508 1.91065 2.20024 2.29132 2.37798 2.93146 2.95579 3.00083 3.67014 3.70616 3.80081 3.87544 4.16632 4.25444 4.31367 4.40602 4.43820 4.58954 4.60924 4.62600 4.79791 4.84840 5.10394 5.34084 5.39948 5.44654 5.57070 5.67547 5.71047 5.85710 6.05008 6.26193 6.29950 6.96916 7.11326 7.22056 7.77734 8.52176 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.018982 B = 0.004997 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.722314 B = 5601.644756 C = 5953.220862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.156 4.156 3 C 0.238 3.762 4 N -0.414 5.414 5 C -0.361 4.361 6 H 0.084 0.916 7 C 0.014 3.986 8 N -0.853 5.853 9 Si 0.985 3.015 10 H -0.278 1.278 11 H -0.263 1.263 12 H -0.268 1.268 13 C 0.489 3.511 14 O -0.617 6.617 15 C 0.065 3.935 16 C -0.097 4.097 17 Cl -0.053 7.053 18 C -0.123 4.123 19 C -0.081 4.081 20 C -0.138 4.138 21 C -0.086 4.086 22 C -0.127 4.127 23 C 0.095 3.905 24 N -0.463 5.463 25 C 0.070 3.930 26 H 0.229 0.771 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.279 0.721 30 H 0.125 0.875 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.242 -8.890 -14.201 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.157 4.157 3 C 0.116 3.884 4 N -0.128 5.128 5 C -0.488 4.488 6 H 0.101 0.899 7 C -0.192 4.192 8 N -0.488 5.488 9 Si 0.808 3.192 10 H -0.204 1.204 11 H -0.187 1.187 12 H -0.193 1.193 13 C 0.277 3.723 14 O -0.504 6.504 15 C -0.047 4.047 16 C -0.132 4.132 17 Cl -0.024 7.024 18 C -0.128 4.128 19 C -0.100 4.100 20 C -0.157 4.157 21 C -0.105 4.105 22 C -0.147 4.147 23 C -0.013 4.013 24 N -0.146 5.146 25 C -0.070 4.070 26 H 0.245 0.755 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.173 0.827 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.105 0.895 35 H 0.145 0.855 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.644 -8.553 -13.806 16.254 hybrid contribution -0.201 0.813 1.502 1.719 sum 0.442 -7.740 -12.305 14.543 Atomic orbital electron populations 1.24975 0.96172 0.99641 1.04247 1.23126 0.94683 1.00558 0.97318 1.18351 0.85243 0.83651 1.01182 1.43873 1.52957 1.10716 1.05298 1.19639 1.38414 1.08519 0.82180 0.89858 1.26036 0.95354 0.96071 1.01754 1.70241 1.20410 1.27307 1.30839 0.85071 0.78864 0.78353 0.76911 1.20418 1.18700 1.19284 1.17136 0.86637 0.85247 0.83235 1.90638 1.50731 1.22367 1.86697 1.19897 0.93372 0.97431 0.94042 1.20001 0.92045 1.03705 0.97427 1.98290 1.51608 1.64408 1.88088 1.18089 0.97580 1.01880 0.95237 1.20547 0.97784 0.99249 0.92425 1.21000 0.98872 0.97660 0.98145 1.21334 0.92480 0.98451 0.98204 1.20437 1.02551 1.00244 0.91483 1.18656 0.91538 1.01160 0.89934 1.44235 1.17404 1.37547 1.15436 1.22321 0.80124 0.99798 1.04760 0.75459 0.90608 0.87789 0.91068 0.85675 0.82748 0.81603 0.82988 0.89459 0.85478 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.84 19.25 74.32 1.43 -8.40 16 2 C -0.16 -7.20 11.52 31.13 0.36 -6.84 16 3 C 0.24 10.88 4.91 84.57 0.42 11.29 16 4 N -0.41 -21.54 2.59 -649.91 -1.68 -23.22 16 5 C -0.36 -20.09 9.40 84.11 0.79 -19.30 16 6 H 0.08 5.02 7.32 -2.91 -0.02 4.99 16 7 C 0.01 0.72 4.81 84.96 0.41 1.13 16 8 N -0.85 -43.10 9.50 21.68 0.21 -42.90 16 9 Si 0.99 40.26 29.63 68.60 2.03 42.29 16 10 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 13 C 0.49 25.65 6.56 86.46 0.57 26.22 16 14 O -0.62 -37.24 16.71 -4.41 -0.07 -37.32 16 15 C 0.06 2.87 4.82 39.85 0.19 3.06 16 16 C -0.10 -4.09 6.73 22.64 0.15 -3.94 16 17 Cl -0.05 -2.23 29.04 -2.72 -0.08 -2.30 16 18 C -0.12 -4.30 6.16 -21.34 -0.13 -4.43 16 19 C -0.08 -2.25 10.06 22.30 0.22 -2.02 16 20 C -0.14 -2.75 9.97 22.02 0.22 -2.53 16 21 C -0.09 -1.50 10.02 22.31 0.22 -1.27 16 22 C -0.13 -2.73 9.90 22.37 0.22 -2.51 16 23 C 0.09 2.94 6.81 39.12 0.27 3.20 16 24 N -0.46 -16.08 2.85 -526.16 -1.50 -17.58 16 25 C 0.07 1.82 10.42 127.77 1.33 3.16 16 26 H 0.23 7.79 7.80 -4.41 -0.03 7.75 16 27 H 0.08 3.07 5.68 -2.39 -0.01 3.06 16 28 H 0.10 4.87 6.23 -2.39 -0.01 4.85 16 29 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 30 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.15 2.24 7.92 -2.91 -0.02 2.22 16 34 H 0.09 2.04 7.45 -2.38 -0.02 2.02 16 35 H 0.13 2.18 7.89 -2.38 -0.02 2.16 16 36 H 0.07 2.07 7.91 -2.39 -0.02 2.05 16 Total: -1.00 -72.97 333.65 6.69 -66.28 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.12 Total: 17.94 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 6.67 Total: -3.19 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -2.98 Total: -83.70 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.07 Total: -37.32 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.08 Total: -2.30 kcal Total: -72.97 6.69 -66.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.964 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds