Wall clock time and date at job start Tue Mar 31 2020 10:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47180 * 123.60853 * 3 2 1 5 5 C 1.37088 * 120.00391 * 264.14274 * 4 3 2 6 6 H 1.07999 * 120.00357 * 197.42745 * 5 4 3 7 7 C 1.38958 * 119.99898 * 17.42538 * 5 4 3 8 8 N 1.31405 * 119.99869 * 21.53911 * 7 5 4 9 9 Si 1.86797 * 119.99732 * 201.53953 * 7 5 4 10 10 H 1.48501 * 109.47536 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47444 * 120.00279 * 9 7 5 12 12 H 1.48505 * 109.47160 * 240.00154 * 9 7 5 13 13 C 1.34781 * 119.99654 * 84.13602 * 4 3 2 14 14 O 1.21288 * 119.99523 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99672 * 0.02562 * 13 4 3 16 16 C 1.50705 * 109.46589 * 180.02562 * 15 13 4 17 17 C 1.34231 * 126.49557 * 264.99838 * 16 15 13 18 18 N 1.36860 * 109.92728 * 180.02562 * 17 16 15 19 19 H 0.96992 * 125.07023 * 180.02562 * 18 17 16 20 20 C 1.37700 * 109.86735 * 359.97438 * 18 17 16 21 21 C 1.39120 * 133.48531 * 179.71655 * 20 18 17 22 22 C 1.37849 * 119.76871 * 179.85601 * 21 20 18 23 23 Cl 1.73602 * 119.68441 * 180.21434 * 22 21 20 24 24 C 1.38932 * 120.63482 * 0.44448 * 22 21 20 25 25 C 1.36614 * 120.51671 * 359.79318 * 24 22 21 26 26 C 1.39632 * 119.78206 * 359.97438 * 25 24 22 27 27 H 4.40641 * 5.51357 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.47314 * 3.61250 * 3 2 1 29 29 H 1.08995 * 109.47094 * 243.61159 * 3 2 1 30 30 H 0.97004 * 119.99561 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47364 * 60.00314 * 15 13 4 32 32 H 1.08995 * 109.47253 * 299.99105 * 15 13 4 33 33 H 1.08004 * 125.03696 * 359.97438 * 17 16 15 34 34 H 1.08003 * 120.11643 * 0.28627 * 21 20 18 35 35 H 1.07994 * 119.74440 * 179.78069 * 24 22 21 36 36 H 1.08004 * 120.11292 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7654 -1.1503 5 6 3.4771 0.1174 -2.3087 6 1 4.0892 0.6161 -3.0455 7 6 3.0371 -1.1812 -2.5347 8 7 1.9860 -1.6398 -1.8933 9 14 3.9401 -2.2748 -3.7505 10 1 5.0815 -1.5269 -4.3362 11 1 4.4462 -3.4819 -3.0493 12 1 3.0099 -2.6848 -4.8331 13 6 3.2456 2.1062 -1.0698 14 8 3.6501 2.7392 -2.0220 15 6 2.8689 2.8184 0.2037 16 6 3.0836 4.3003 0.0328 17 6 4.1762 4.9948 0.3873 18 7 4.0089 6.3175 0.0780 19 1 4.6634 7.0148 0.2398 20 6 2.7733 6.5106 -0.4982 21 6 2.1083 7.6318 -0.9842 22 6 0.8449 7.4996 -1.5196 23 17 0.0193 8.8992 -2.1305 24 6 0.2240 6.2578 -1.5707 25 6 0.8578 5.1452 -1.0944 26 6 2.1398 5.2560 -0.5523 27 1 -1.0501 0.0000 0.0003 28 1 3.0099 -1.0248 -0.0648 29 1 3.0091 0.4575 0.9205 30 1 1.6787 -2.5462 -2.0514 31 1 3.4897 2.4530 1.0217 32 1 1.8200 2.6276 0.4302 33 1 5.0566 4.5726 0.8490 34 1 2.5829 8.6013 -0.9484 35 1 -0.7674 6.1713 -1.9901 36 1 0.3692 4.1830 -1.1378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491023919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:15 Heat of formation + Delta-G solvation = 67.976996 kcal Electronic energy + Delta-G solvation = -23028.007262 eV Core-core repulsion = 19504.963788 eV Total energy + Delta-G solvation = -3523.043473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.25743 -40.29207 -38.40595 -37.00193 -36.88289 -34.25810 -33.62328 -32.93928 -31.21762 -30.20354 -28.59146 -27.84799 -26.04487 -23.98881 -22.80959 -21.63769 -20.00850 -19.59648 -18.77825 -18.31388 -17.83876 -17.45618 -16.82799 -16.43333 -15.97414 -15.88824 -15.41888 -15.38753 -14.86827 -14.43840 -14.28204 -13.95514 -13.88994 -13.77636 -13.61278 -13.38215 -13.14770 -12.75892 -12.47907 -12.41199 -12.15931 -12.06454 -11.92279 -11.75618 -11.12038 -11.04037 -10.61745 -10.54577 -10.16389 -9.74150 -9.15929 -8.58421 -8.25324 -5.85090 0.01947 0.50698 1.09494 1.37252 1.44143 1.56305 1.68692 2.00469 2.23208 2.30610 2.38241 2.44770 2.77526 3.11381 3.41938 3.72493 3.89349 3.95797 4.07224 4.13429 4.31114 4.35683 4.49784 4.57312 4.68177 4.70470 4.78314 4.89080 5.04690 5.13927 5.24457 5.46460 5.48922 5.53162 5.59552 5.77906 6.06670 6.15664 6.54149 6.73941 7.20420 7.24681 7.53002 8.12144 8.72481 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.003405 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.031496 B = 8220.122679 C = 8425.269147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.150 4.150 3 C 0.234 3.766 4 N -0.458 5.458 5 C -0.347 4.347 6 H 0.071 0.929 7 C 0.003 3.997 8 N -0.873 5.873 9 Si 0.978 3.022 10 H -0.276 1.276 11 H -0.264 1.264 12 H -0.284 1.284 13 C 0.448 3.552 14 O -0.621 6.621 15 C -0.047 4.047 16 C -0.172 4.172 17 C 0.077 3.923 18 N -0.577 5.577 19 H 0.434 0.566 20 C 0.092 3.908 21 C -0.116 4.116 22 C -0.026 4.026 23 Cl -0.064 7.064 24 C -0.143 4.143 25 C -0.074 4.074 26 C -0.113 4.113 27 H 0.229 0.771 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.270 0.730 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.206 0.794 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 13.625 9.320 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.152 4.152 3 C 0.111 3.889 4 N -0.177 5.177 5 C -0.475 4.475 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.511 5.511 9 Si 0.802 3.198 10 H -0.201 1.201 11 H -0.189 1.189 12 H -0.210 1.210 13 C 0.238 3.762 14 O -0.507 6.507 15 C -0.087 4.087 16 C -0.179 4.179 17 C -0.049 4.049 18 N -0.181 5.181 19 H 0.275 0.725 20 C -0.016 4.016 21 C -0.137 4.137 22 C -0.054 4.054 23 Cl -0.035 7.035 24 C -0.163 4.163 25 C -0.093 4.093 26 C -0.118 4.118 27 H 0.246 0.754 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.223 0.777 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.427 13.944 8.851 16.521 hybrid contribution 0.047 -0.617 -1.082 1.247 sum 0.474 13.326 7.769 15.433 Atomic orbital electron populations 1.25108 0.96375 1.03023 1.02526 1.23538 0.95102 0.98271 0.98241 1.18342 0.84363 0.98194 0.87981 1.43924 1.56675 1.04821 1.12240 1.19528 1.31331 0.97421 0.99220 0.91127 1.25869 0.95507 0.98701 0.99908 1.70185 1.19995 1.17564 1.43342 0.85126 0.78283 0.78291 0.78073 1.20099 1.18914 1.21003 1.21047 0.82538 0.81784 0.90835 1.90490 1.52176 1.66172 1.41825 1.19829 1.03280 0.90091 0.95502 1.19874 0.95876 0.93671 1.08489 1.22052 0.99261 0.82400 1.01215 1.41566 1.14235 1.09074 1.53243 0.72503 1.18053 0.87908 0.94507 1.01135 1.19922 0.93745 0.97598 1.02437 1.20401 0.93951 0.88341 1.02697 1.98342 1.78301 1.40509 1.86320 1.20586 1.01577 0.90499 1.03619 1.20300 0.93547 0.98409 0.97004 1.19446 0.95496 0.93660 1.03198 0.75398 0.89091 0.87929 0.92033 0.86236 0.89524 0.77712 0.82733 0.83977 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.91 19.25 74.32 1.43 -8.48 16 2 C -0.15 -6.46 10.88 31.12 0.34 -6.12 16 3 C 0.23 9.91 4.91 84.57 0.42 10.32 16 4 N -0.46 -22.91 2.60 -645.41 -1.68 -24.59 16 5 C -0.35 -19.51 9.33 84.04 0.78 -18.73 16 6 H 0.07 4.32 7.38 -2.91 -0.02 4.30 16 7 C 0.00 0.17 4.87 84.93 0.41 0.58 16 8 N -0.87 -45.41 9.48 21.66 0.21 -45.21 16 9 Si 0.98 42.23 29.60 68.60 2.03 44.26 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 13 C 0.45 21.49 7.56 87.66 0.66 22.15 16 14 O -0.62 -35.19 15.68 -3.06 -0.05 -35.24 16 15 C -0.05 -1.64 4.84 29.10 0.14 -1.50 16 16 C -0.17 -5.75 4.81 -18.62 -0.09 -5.84 16 17 C 0.08 1.97 11.73 82.99 0.97 2.94 16 18 N -0.58 -12.88 6.07 -187.59 -1.14 -14.02 16 19 H 0.43 5.97 8.96 -92.71 -0.83 5.13 16 20 C 0.09 2.62 7.28 39.02 0.28 2.91 16 21 C -0.12 -2.90 9.84 22.39 0.22 -2.68 16 22 C -0.03 -0.69 6.31 22.34 0.14 -0.55 16 23 Cl -0.06 -1.43 28.93 -2.72 -0.08 -1.51 16 24 C -0.14 -4.19 9.75 22.06 0.21 -3.98 16 25 C -0.07 -2.53 10.05 22.23 0.22 -2.30 16 26 C -0.11 -3.90 6.35 -20.20 -0.13 -4.03 16 27 H 0.23 7.07 7.80 -4.41 -0.03 7.03 16 28 H 0.09 4.14 6.44 -2.39 -0.02 4.12 16 29 H 0.10 3.38 6.69 -2.39 -0.02 3.36 16 30 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 31 H 0.12 3.26 7.42 -2.39 -0.02 3.24 16 32 H 0.09 3.05 7.50 -2.39 -0.02 3.03 16 33 H 0.21 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -73.34 334.17 5.62 -67.72 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.30 Total: 23.91 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 6.02 Total: -15.32 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -2.61 Total: -83.82 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.05 Total: -35.24 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -73.34 5.62 -67.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491023919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.698 kcal (2) G-P(sol) polarization free energy of solvation -73.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds