Wall clock time and date at job start Tue Mar 31 2020 11:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47041 * 11.41487 * 3 2 1 5 5 C 1.36886 * 120.00026 * 262.20733 * 4 3 2 6 6 H 1.07999 * 119.99925 * 200.22726 * 5 4 3 7 7 C 1.38988 * 119.99764 * 20.22768 * 5 4 3 8 8 N 1.31404 * 120.00503 * 17.64639 * 7 5 4 9 9 Si 1.86800 * 119.99768 * 197.64706 * 7 5 4 10 10 H 1.48503 * 109.47238 * 89.99811 * 9 7 5 11 11 H 1.48500 * 109.47145 * 209.99955 * 9 7 5 12 12 H 1.48502 * 109.47355 * 330.00002 * 9 7 5 13 13 C 1.34779 * 120.00085 * 82.21478 * 4 3 2 14 14 O 1.21774 * 120.00225 * 181.86896 * 13 4 3 15 15 C 1.46305 * 120.00223 * 1.86265 * 13 4 3 16 16 C 1.36983 * 126.12038 * 172.57833 * 15 13 4 17 17 N 1.30652 * 114.01780 * 180.02562 * 16 15 13 18 18 C 1.30428 * 117.28848 * 0.02562 * 17 16 15 19 19 C 1.47672 * 124.74437 * 180.02562 * 18 17 16 20 20 C 1.41173 * 126.37642 * 179.97438 * 19 18 17 21 21 N 1.30529 * 108.08744 * 180.02562 * 20 19 18 22 22 N 1.39947 * 108.85882 * 0.02562 * 21 20 19 23 23 C 1.46501 * 125.79914 * 179.73663 * 22 21 20 24 24 C 1.34590 * 108.40147 * 359.97438 * 22 21 20 25 25 S 1.70924 * 110.50994 * 0.26184 * 18 17 16 26 26 H 4.40634 * 5.51389 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47062 * 251.41267 * 3 2 1 28 28 H 1.08996 * 109.47254 * 131.41535 * 3 2 1 29 29 H 0.96993 * 120.00224 * 180.02562 * 8 7 5 30 30 H 1.08000 * 122.99230 * 0.03917 * 16 15 13 31 31 H 1.08002 * 125.95617 * 0.06834 * 20 19 18 32 32 H 1.08997 * 109.47332 * 90.01807 * 23 22 21 33 33 H 1.08992 * 109.47155 * 210.02467 * 23 22 21 34 34 H 1.09006 * 109.46986 * 330.02559 * 23 22 21 35 35 H 1.08003 * 126.29518 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3530 -0.2734 5 6 3.5150 -2.1653 0.7608 6 1 4.1644 -3.0080 0.5750 7 6 3.0650 -1.9056 2.0499 8 7 2.0265 -1.1228 2.2382 9 14 3.9366 -2.6694 3.5150 10 1 5.0176 -1.7617 3.9763 11 1 2.9627 -2.8790 4.6163 12 1 4.5225 -3.9747 3.1172 13 6 3.2107 -1.7986 -1.5431 14 8 3.5848 -2.9353 -1.7682 15 6 2.8434 -0.9165 -2.6511 16 6 3.0060 -1.1844 -3.9846 17 7 2.5953 -0.2272 -4.7732 18 6 2.0948 0.8378 -4.2107 19 6 1.5824 2.0140 -4.9419 20 6 1.0341 3.1822 -4.3695 21 7 0.6964 3.9884 -5.3388 22 7 1.0080 3.3819 -6.5610 23 6 0.7786 3.9597 -7.8875 24 6 1.5494 2.1753 -6.3106 25 16 2.1210 0.6843 -2.5085 26 1 -1.0497 -0.0004 -0.0003 27 1 3.0092 0.3284 0.9741 28 1 3.0091 0.6806 -0.7706 29 1 1.7127 -0.9413 3.1379 30 1 3.4353 -2.1051 -4.3514 31 1 0.9155 3.3754 -3.3135 32 1 1.6555 4.5314 -8.1914 33 1 0.5993 3.1600 -8.6060 34 1 -0.0897 4.6177 -7.8520 35 1 1.8939 1.4641 -7.0467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491023980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:16 Heat of formation + Delta-G solvation = 170.282774 kcal Electronic energy + Delta-G solvation = -22842.661549 eV Core-core repulsion = 19358.390845 eV Total energy + Delta-G solvation = -3484.270704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23395 -39.17038 -38.28967 -35.26975 -33.65807 -32.46390 -31.40110 -31.23253 -29.02052 -27.44316 -26.71614 -25.39313 -24.23949 -21.84566 -21.17104 -20.56068 -18.53785 -18.10642 -17.78872 -16.81436 -16.75057 -15.69787 -15.61475 -15.19404 -14.73037 -14.50273 -14.39360 -13.87436 -13.71281 -13.68515 -13.04461 -13.02255 -12.88293 -12.70050 -12.45718 -12.15985 -11.74119 -11.15595 -10.93300 -10.89414 -10.65587 -10.47008 -9.72275 -9.64194 -9.52402 -9.44087 -9.26033 -9.07814 -8.68503 -8.41370 -8.06115 -7.62063 -6.53620 -4.02243 0.67902 1.76286 1.78497 2.24630 2.30773 2.53485 3.08880 3.16925 3.21432 3.43847 3.61734 3.90199 4.05182 4.18159 4.28009 4.50267 4.76592 4.83788 4.84027 4.92754 4.94019 5.09580 5.26086 5.36924 5.68915 5.71311 5.76650 5.97858 6.07792 6.36751 6.53717 6.68797 6.77812 6.86960 7.36367 7.48149 7.83955 8.20021 8.25033 8.66853 8.92917 9.10279 9.70572 10.46162 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.003572 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.882420 B = 7837.688499 C = 8570.561607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.125 4.125 3 C 0.222 3.778 4 N -0.422 5.422 5 C -0.302 4.302 6 H 0.111 0.889 7 C 0.031 3.969 8 N -0.853 5.853 9 Si 0.931 3.069 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.512 3.488 14 O -0.573 6.573 15 C -0.260 4.260 16 C 0.085 3.915 17 N -0.488 5.488 18 C 0.058 3.942 19 C -0.172 4.172 20 C 0.074 3.926 21 N -0.297 5.297 22 N -0.373 5.373 23 C 0.101 3.899 24 C 0.103 3.897 25 S 0.215 5.785 26 H 0.203 0.797 27 H 0.126 0.874 28 H 0.066 0.934 29 H 0.274 0.726 30 H 0.180 0.820 31 H 0.189 0.811 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 11.543 -12.101 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.128 4.128 3 C 0.097 3.903 4 N -0.138 5.138 5 C -0.430 4.430 6 H 0.128 0.872 7 C -0.175 4.175 8 N -0.490 5.490 9 Si 0.757 3.243 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.301 3.699 14 O -0.459 6.459 15 C -0.385 4.385 16 C -0.073 4.073 17 N -0.203 5.203 18 C -0.212 4.212 19 C -0.186 4.186 20 C -0.115 4.115 21 N -0.118 5.118 22 N -0.153 5.153 23 C -0.040 4.040 24 C -0.049 4.049 25 S 0.476 5.524 26 H 0.220 0.780 27 H 0.144 0.856 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.197 0.803 31 H 0.206 0.794 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.494 12.924 -12.236 18.137 hybrid contribution 0.665 -1.940 0.663 2.155 sum -2.830 10.984 -11.573 16.205 Atomic orbital electron populations 1.24278 0.95298 1.01033 1.04651 1.22699 0.94019 0.99312 0.96729 1.18532 0.85226 0.84602 1.01959 1.43632 1.53857 1.11408 1.04942 1.19813 1.27202 1.11139 0.84879 0.87169 1.25457 0.95110 0.97500 0.99460 1.70022 1.19864 1.35851 1.23235 0.85839 0.78923 0.79751 0.79808 1.20011 1.20793 1.19101 1.16544 0.85524 0.86308 0.81534 1.90684 1.53301 1.18530 1.83385 1.26394 1.12957 0.99280 0.99888 1.22073 0.99674 0.98437 0.87158 1.66338 1.14213 1.00602 1.39105 1.24794 1.02549 0.95436 0.98462 1.18126 1.13917 0.95074 0.91530 1.24004 0.97064 0.90975 0.99410 1.77160 1.24074 1.21771 0.88751 1.48317 1.47214 1.13287 1.06490 1.21908 1.03485 1.00146 0.78476 1.22956 0.96509 0.88312 0.97147 1.84547 1.54757 1.12372 1.00719 0.77992 0.85599 0.91717 0.91540 0.80344 0.79398 0.90508 0.89238 0.89113 0.79782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.58 19.25 29.55 0.57 -4.02 16 2 C -0.12 -2.66 9.04 -37.12 -0.34 -3.00 16 3 C 0.22 4.81 4.73 -6.83 -0.03 4.77 16 4 N -0.42 -10.60 2.60 -119.56 -0.31 -10.91 16 5 C -0.30 -8.01 9.29 -15.02 -0.14 -8.15 16 6 H 0.11 3.05 7.41 -52.49 -0.39 2.66 16 7 C 0.03 0.76 4.94 -17.46 -0.09 0.67 16 8 N -0.85 -21.13 9.44 55.50 0.52 -20.60 16 9 Si 0.93 19.45 29.59 -169.99 -5.03 14.42 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.51 12.92 7.50 -13.02 -0.10 12.82 16 14 O -0.57 -16.15 16.56 5.12 0.08 -16.07 16 15 C -0.26 -5.52 6.26 -36.80 -0.23 -5.75 16 16 C 0.09 1.67 11.16 -18.51 -0.21 1.47 16 17 N -0.49 -8.85 10.46 -12.00 -0.13 -8.98 16 18 C 0.06 0.97 7.23 -14.30 -0.10 0.87 16 19 C -0.17 -2.45 6.12 -105.07 -0.64 -3.10 16 20 C 0.07 0.97 11.75 -16.99 -0.20 0.77 16 21 N -0.30 -3.87 12.51 30.85 0.39 -3.48 16 22 N -0.37 -4.03 3.99 -67.56 -0.27 -4.30 16 23 C 0.10 0.58 11.45 59.85 0.69 1.27 16 24 C 0.10 1.22 11.45 -16.48 -0.19 1.04 16 25 S 0.22 3.74 16.14 -107.50 -1.73 2.00 16 26 H 0.20 3.21 7.80 -54.10 -0.42 2.79 16 27 H 0.13 2.81 6.39 -51.93 -0.33 2.47 16 28 H 0.07 1.25 4.50 -22.70 -0.10 1.15 16 29 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 30 H 0.18 3.32 8.06 -52.49 -0.42 2.90 16 31 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.19 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -32.85 325.78 -5.49 -38.34 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -2.92 Total: 5.01 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.01 Total: -0.35 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.20 Total: -48.27 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.08 Total: -16.07 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.73 Total: 2.00 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.85 -5.49 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491023980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.620 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds