Wall clock time and date at job start Tue Mar 31 2020 11:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47385 * 191.62678 * 3 2 1 5 5 C 1.36935 * 119.99807 * 264.32669 * 4 3 2 6 6 H 1.08003 * 120.00264 * 196.71881 * 5 4 3 7 7 C 1.38819 * 120.00448 * 16.72083 * 5 4 3 8 8 N 1.31614 * 119.99467 * 22.29347 * 7 5 4 9 9 Si 1.86793 * 120.00122 * 202.29300 * 7 5 4 10 10 H 1.48504 * 109.47196 * 90.00022 * 9 7 5 11 11 H 1.48500 * 109.47291 * 209.99960 * 9 7 5 12 12 H 1.48499 * 109.47343 * 330.00149 * 9 7 5 13 13 C 1.46499 * 120.00042 * 84.31960 * 4 3 2 14 14 C 1.50699 * 109.47268 * 270.00183 * 13 4 3 15 15 C 1.35371 * 126.72922 * 94.98488 * 14 13 4 16 16 N 1.36109 * 106.05489 * 180.02562 * 15 14 13 17 17 C 1.40262 * 125.94879 * 179.97438 * 16 15 14 18 18 C 1.38825 * 120.05000 * 359.73067 * 17 16 15 19 19 C 1.38113 * 119.94864 * 179.71623 * 18 17 16 20 20 C 1.38387 * 120.04880 * 0.55533 * 19 18 17 21 21 Cl 1.73602 * 119.94939 * 179.74327 * 20 19 18 22 22 C 1.38387 * 120.10503 * 359.72020 * 20 19 18 23 23 C 1.38104 * 120.05337 * 359.97438 * 22 20 19 24 24 N 1.28732 * 108.10804 * 359.97438 * 16 15 14 25 25 N 1.28599 * 110.23863 * 0.02562 * 24 16 15 26 26 H 4.40643 * 5.51436 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47417 * 71.62447 * 3 2 1 28 28 H 1.08996 * 109.47038 * 311.62751 * 3 2 1 29 29 H 0.97002 * 119.99889 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46490 * 150.00478 * 13 4 3 31 31 H 1.08996 * 109.47045 * 30.00744 * 13 4 3 32 32 H 1.08009 * 126.97645 * 0.03052 * 15 14 13 33 33 H 1.08004 * 120.02649 * 359.97438 * 18 17 16 34 34 H 1.07998 * 119.97900 * 180.25072 * 19 18 17 35 35 H 1.08006 * 119.97278 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.03259 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3537 0.2784 5 6 3.4722 2.1857 -0.7553 6 1 4.0747 3.0622 -0.5680 7 6 3.0408 1.9025 -2.0440 8 7 1.9876 1.1358 -2.2318 9 14 3.9550 2.6095 -3.5115 10 1 5.0245 1.6676 -3.9292 11 1 3.0060 2.8110 -4.6358 12 1 4.5615 3.9121 -3.1362 13 6 3.2594 1.8168 1.6626 14 6 1.9693 2.4649 2.0945 15 6 0.9513 1.8749 2.7639 16 7 0.0048 2.8380 2.9347 17 6 -1.2293 2.6743 3.5808 18 6 -1.5778 1.4397 4.1114 19 6 -2.7910 1.2824 4.7524 20 6 -3.6638 2.3513 4.8559 21 17 -5.1910 2.1489 5.6563 22 6 -3.3210 3.5815 4.3227 23 6 -2.1063 3.7453 3.6864 24 7 0.4394 3.9254 2.3999 25 7 1.6053 3.7360 1.8914 26 1 -1.0502 -0.0003 -0.0003 27 1 3.0095 -0.3231 -0.9753 28 1 3.0096 -0.6818 0.7681 29 1 1.6859 0.9383 -3.1323 30 1 4.0708 2.5414 1.7309 31 1 3.4747 0.9679 2.3115 32 1 0.9005 0.8482 3.0954 33 1 -0.8990 0.6040 4.0267 34 1 -3.0609 0.3232 5.1689 35 1 -4.0040 4.4142 4.4043 36 1 -1.8390 4.7056 3.2708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491645648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:07 Heat of formation + Delta-G solvation = 215.249741 kcal Electronic energy + Delta-G solvation = -23006.259735 eV Core-core repulsion = 19521.895239 eV Total energy + Delta-G solvation = -3484.364497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.079 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.92144 -39.59068 -36.89398 -36.25362 -34.23120 -32.13320 -31.58689 -31.54179 -30.11692 -29.63177 -26.59050 -25.82720 -24.13824 -23.46383 -21.94443 -21.23864 -20.23850 -18.33575 -17.48401 -16.89190 -16.51492 -16.01815 -15.63651 -15.23577 -14.94631 -14.29663 -13.91203 -13.88358 -13.74499 -13.64001 -13.36324 -12.73619 -12.51926 -12.11160 -11.96570 -11.61686 -11.51951 -11.29180 -11.10320 -10.95962 -10.76039 -10.42808 -10.24858 -10.23588 -9.93038 -9.51348 -9.15872 -8.89129 -8.66575 -8.50801 -8.36307 -7.11411 -5.80945 -3.20716 0.40731 0.84875 1.74794 2.14501 2.52495 3.12996 3.33738 3.40108 3.47226 3.49067 4.15761 4.25966 4.31720 4.41686 4.54387 4.66286 4.78467 4.92105 5.16664 5.28335 5.41424 5.48655 5.55270 5.62064 5.64543 5.73273 5.79137 5.82354 6.06691 6.20943 6.41810 6.54212 6.63703 6.74141 7.07405 7.16830 7.35505 7.79607 8.23666 8.98522 9.07442 9.14503 9.71989 10.15916 11.22757 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.023342 B = 0.003157 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.276723 B = 8865.781506 C = 9069.120329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.090 4.090 3 C 0.264 3.736 4 N -0.570 5.570 5 C -0.258 4.258 6 H 0.081 0.919 7 C 0.004 3.996 8 N -0.889 5.889 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.294 1.294 12 H -0.278 1.278 13 C 0.217 3.783 14 C -0.001 4.001 15 C -0.051 4.051 16 N -0.259 5.259 17 C 0.154 3.846 18 C -0.112 4.112 19 C -0.087 4.087 20 C -0.042 4.042 21 Cl -0.066 7.066 22 C -0.089 4.089 23 C -0.098 4.098 24 N -0.096 5.096 25 N -0.234 5.234 26 H 0.184 0.816 27 H 0.100 0.900 28 H 0.040 0.960 29 H 0.254 0.746 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.181 0.819 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 -2.176 16.318 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.093 4.093 3 C 0.139 3.861 4 N -0.288 5.288 5 C -0.386 4.386 6 H 0.099 0.901 7 C -0.196 4.196 8 N -0.531 5.531 9 Si 0.734 3.266 10 H -0.214 1.214 11 H -0.220 1.220 12 H -0.203 1.203 13 C 0.087 3.913 14 C -0.139 4.139 15 C -0.198 4.198 16 N -0.047 5.047 17 C 0.061 3.939 18 C -0.133 4.133 19 C -0.106 4.106 20 C -0.069 4.069 21 Cl -0.037 7.037 22 C -0.108 4.108 23 C -0.118 4.118 24 N -0.074 5.074 25 N -0.103 5.103 26 H 0.202 0.798 27 H 0.118 0.882 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.198 0.802 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.580 -0.753 15.845 18.531 hybrid contribution -0.432 -0.692 -0.816 1.154 sum -10.012 -1.445 15.029 18.116 Atomic orbital electron populations 1.24068 0.95202 1.05116 1.07940 1.24256 0.95203 0.95850 0.93974 1.17966 0.82781 0.85183 1.00192 1.44524 1.73180 1.10815 1.00249 1.19326 1.25897 1.07779 0.85643 0.90102 1.24946 0.96324 0.99987 0.98314 1.70132 1.21465 1.40913 1.20627 0.86247 0.79160 0.78811 0.82385 1.21362 1.22040 1.20321 1.19537 0.89228 0.95932 0.86597 1.23791 1.01640 0.90665 0.97850 1.23387 0.90632 0.96996 1.08810 1.44580 1.12796 1.09231 1.38102 1.17754 0.84082 0.95449 0.96631 1.20898 0.97650 0.95856 0.98882 1.20870 0.92302 0.98654 0.98772 1.20989 0.89103 0.95706 1.01112 1.98380 1.29394 1.97596 1.78362 1.20952 0.96402 0.96393 0.97058 1.20962 0.92484 0.99179 0.99214 1.78260 1.08485 1.08389 1.12238 1.75043 1.03310 1.17222 1.14705 0.79848 0.88190 0.94216 0.93571 0.90925 0.91796 0.80184 0.83793 0.83746 0.83797 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.78 19.25 29.55 0.57 -6.21 16 2 C -0.09 -2.08 11.01 -37.12 -0.41 -2.49 16 3 C 0.26 5.88 5.45 -6.83 -0.04 5.84 16 4 N -0.57 -13.31 2.49 -177.95 -0.44 -13.75 16 5 C -0.26 -6.81 9.66 -15.06 -0.15 -6.96 16 6 H 0.08 2.15 7.90 -52.48 -0.41 1.74 16 7 C 0.00 0.10 4.85 -17.43 -0.08 0.01 16 8 N -0.89 -25.14 9.49 55.49 0.53 -24.61 16 9 Si 0.90 21.69 29.61 -169.99 -5.03 16.66 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.22 4.21 6.26 -5.19 -0.03 4.17 16 14 C 0.00 -0.02 6.52 -82.77 -0.54 -0.56 16 15 C -0.05 -0.88 10.57 -16.68 -0.18 -1.06 16 16 N -0.26 -4.47 3.56 -10.47 -0.04 -4.51 16 17 C 0.15 2.11 6.68 -83.56 -0.56 1.55 16 18 C -0.11 -1.21 9.46 -39.41 -0.37 -1.59 16 19 C -0.09 -0.79 9.82 -39.57 -0.39 -1.18 16 20 C -0.04 -0.40 6.32 -39.47 -0.25 -0.64 16 21 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 22 C -0.09 -0.86 9.82 -39.58 -0.39 -1.25 16 23 C -0.10 -1.18 9.62 -39.41 -0.38 -1.56 16 24 N -0.10 -1.96 12.41 60.35 0.75 -1.21 16 25 N -0.23 -5.27 12.39 33.29 0.41 -4.85 16 26 H 0.18 3.61 7.80 -54.08 -0.42 3.19 16 27 H 0.10 2.46 6.42 -51.93 -0.33 2.13 16 28 H 0.04 0.74 7.97 -51.93 -0.41 0.32 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.07 1.39 8.02 -51.93 -0.42 0.97 16 31 H 0.06 1.01 7.95 -51.93 -0.41 0.59 16 32 H 0.18 2.49 7.11 -52.48 -0.37 2.12 16 33 H 0.14 1.35 6.77 -52.48 -0.36 1.00 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.15 1.85 7.69 -52.49 -0.40 1.45 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -32.16 337.57 -6.96 -39.12 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.53 Total: 2.07 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.19 Total: -11.93 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 1.21 Total: -48.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.16 -6.96 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491645648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.368 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 215.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds