Wall clock time and date at job start Tue Mar 31 2020 11:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47385 * 191.62678 * 3 2 1 5 5 C 1.36935 * 119.99807 * 264.32669 * 4 3 2 6 6 H 1.08003 * 120.00264 * 196.71881 * 5 4 3 7 7 C 1.38819 * 120.00448 * 16.72083 * 5 4 3 8 8 N 1.31614 * 119.99467 * 22.29347 * 7 5 4 9 9 Si 1.86793 * 120.00122 * 202.29300 * 7 5 4 10 10 H 1.48504 * 109.47196 * 90.00022 * 9 7 5 11 11 H 1.48500 * 109.47291 * 209.99960 * 9 7 5 12 12 H 1.48499 * 109.47343 * 330.00149 * 9 7 5 13 13 C 1.46499 * 120.00042 * 84.31960 * 4 3 2 14 14 C 1.50699 * 109.47268 * 270.00183 * 13 4 3 15 15 C 1.35371 * 126.72922 * 94.98488 * 14 13 4 16 16 N 1.36109 * 106.05489 * 180.02562 * 15 14 13 17 17 C 1.40262 * 125.94879 * 179.97438 * 16 15 14 18 18 C 1.38825 * 120.05000 * 359.73067 * 17 16 15 19 19 C 1.38113 * 119.94864 * 179.71623 * 18 17 16 20 20 C 1.38387 * 120.04880 * 0.55533 * 19 18 17 21 21 Cl 1.73602 * 119.94939 * 179.74327 * 20 19 18 22 22 C 1.38387 * 120.10503 * 359.72020 * 20 19 18 23 23 C 1.38104 * 120.05337 * 359.97438 * 22 20 19 24 24 N 1.28732 * 108.10804 * 359.97438 * 16 15 14 25 25 N 1.28599 * 110.23863 * 0.02562 * 24 16 15 26 26 H 4.40643 * 5.51436 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47417 * 71.62447 * 3 2 1 28 28 H 1.08996 * 109.47038 * 311.62751 * 3 2 1 29 29 H 0.97002 * 119.99889 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46490 * 150.00478 * 13 4 3 31 31 H 1.08996 * 109.47045 * 30.00744 * 13 4 3 32 32 H 1.08009 * 126.97645 * 0.03052 * 15 14 13 33 33 H 1.08004 * 120.02649 * 359.97438 * 18 17 16 34 34 H 1.07998 * 119.97900 * 180.25072 * 19 18 17 35 35 H 1.08006 * 119.97278 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.03259 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3537 0.2784 5 6 3.4722 2.1857 -0.7553 6 1 4.0747 3.0622 -0.5680 7 6 3.0408 1.9025 -2.0440 8 7 1.9876 1.1358 -2.2318 9 14 3.9550 2.6095 -3.5115 10 1 5.0245 1.6676 -3.9292 11 1 3.0060 2.8110 -4.6358 12 1 4.5615 3.9121 -3.1362 13 6 3.2594 1.8168 1.6626 14 6 1.9693 2.4649 2.0945 15 6 0.9513 1.8749 2.7639 16 7 0.0048 2.8380 2.9347 17 6 -1.2293 2.6743 3.5808 18 6 -1.5778 1.4397 4.1114 19 6 -2.7910 1.2824 4.7524 20 6 -3.6638 2.3513 4.8559 21 17 -5.1910 2.1489 5.6563 22 6 -3.3210 3.5815 4.3227 23 6 -2.1063 3.7453 3.6864 24 7 0.4394 3.9254 2.3999 25 7 1.6053 3.7360 1.8914 26 1 -1.0502 -0.0003 -0.0003 27 1 3.0095 -0.3231 -0.9753 28 1 3.0096 -0.6818 0.7681 29 1 1.6859 0.9383 -3.1323 30 1 4.0708 2.5414 1.7309 31 1 3.4747 0.9679 2.3115 32 1 0.9005 0.8482 3.0954 33 1 -0.8990 0.6040 4.0267 34 1 -3.0609 0.3232 5.1689 35 1 -4.0040 4.4142 4.4043 36 1 -1.8390 4.7056 3.2708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491645648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:07 Heat of formation + Delta-G solvation = 197.620386 kcal Electronic energy + Delta-G solvation = -23007.024201 eV Core-core repulsion = 19521.895239 eV Total energy + Delta-G solvation = -3485.128963 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.079 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.30200 -40.47966 -38.02875 -37.61232 -35.46481 -33.75976 -33.33068 -32.56628 -31.65150 -30.69389 -28.18205 -27.65038 -25.28123 -24.59171 -23.49609 -22.43035 -21.57433 -19.45331 -19.30716 -18.26073 -17.79213 -17.43796 -16.87246 -16.47207 -16.27174 -15.57187 -15.47472 -15.34431 -15.00547 -14.69584 -14.64561 -14.14072 -13.60039 -13.34190 -13.33849 -12.98248 -12.93873 -12.74956 -12.62385 -12.45615 -12.17923 -12.02540 -11.89905 -11.61537 -11.55014 -10.84968 -10.75660 -10.32302 -10.30894 -10.03714 -9.52205 -8.99187 -7.83089 -5.22171 -0.57050 0.04852 0.93736 0.97351 1.36756 1.47370 1.49697 1.56524 1.65175 2.41520 2.43134 2.55113 2.63200 3.25871 3.36759 3.52298 3.66453 3.87646 3.93650 3.96234 4.09745 4.16591 4.27277 4.32818 4.51327 4.72795 4.77318 4.86892 4.95631 4.99959 5.05719 5.18255 5.33968 5.36565 5.38316 5.66024 5.74000 5.86388 6.30571 7.12718 7.40104 7.55289 7.83931 8.22698 9.18072 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.023342 B = 0.003157 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.276723 B = 8865.781506 C = 9069.120329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.109 4.109 3 C 0.264 3.736 4 N -0.583 5.583 5 C -0.255 4.255 6 H 0.070 0.930 7 C -0.045 4.045 8 N -0.913 5.913 9 Si 0.956 3.044 10 H -0.279 1.279 11 H -0.306 1.306 12 H -0.278 1.278 13 C 0.216 3.784 14 C -0.025 4.025 15 C -0.033 4.033 16 N -0.247 5.247 17 C 0.111 3.889 18 C -0.103 4.103 19 C -0.079 4.079 20 C -0.036 4.036 21 Cl -0.052 7.052 22 C -0.086 4.086 23 C -0.106 4.106 24 N -0.122 5.122 25 N -0.287 5.287 26 H 0.204 0.796 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.244 0.756 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.218 0.782 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.165 0.835 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 -3.734 18.493 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.112 4.112 3 C 0.139 3.861 4 N -0.301 5.301 5 C -0.385 4.385 6 H 0.088 0.912 7 C -0.241 4.241 8 N -0.558 5.558 9 Si 0.786 3.214 10 H -0.205 1.205 11 H -0.233 1.233 12 H -0.203 1.203 13 C 0.088 3.912 14 C -0.165 4.165 15 C -0.182 4.182 16 N -0.035 5.035 17 C 0.020 3.980 18 C -0.124 4.124 19 C -0.098 4.098 20 C -0.064 4.064 21 Cl -0.023 7.023 22 C -0.105 4.105 23 C -0.126 4.126 24 N -0.099 5.099 25 N -0.154 5.154 26 H 0.221 0.779 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.235 0.765 33 H 0.180 0.820 34 H 0.192 0.808 35 H 0.183 0.817 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.986 -2.279 18.066 21.266 hybrid contribution -0.184 -0.219 -1.253 1.286 sum -11.170 -2.498 16.812 20.339 Atomic orbital electron populations 1.24637 0.95994 1.04605 1.07445 1.24585 0.95838 0.96336 0.94442 1.17983 0.82568 0.85382 1.00141 1.44549 1.73530 1.10971 1.01073 1.19441 1.24954 1.07269 0.86875 0.91205 1.25488 0.97240 1.01204 1.00181 1.70279 1.22765 1.42775 1.19952 0.85428 0.78011 0.78292 0.79659 1.20536 1.23334 1.20304 1.19683 0.88872 0.97370 0.85295 1.23820 1.02512 0.90554 0.99578 1.23827 0.89426 0.98012 1.06893 1.44778 1.13640 1.08387 1.36670 1.18195 0.83463 0.97383 0.98999 1.21136 0.98403 0.95029 0.97810 1.21202 0.91238 0.99740 0.97649 1.21175 0.89546 0.95630 1.00049 1.98396 1.28462 1.97519 1.77937 1.21134 0.95684 0.97446 0.96187 1.20994 0.93315 0.98606 0.99727 1.78150 1.08355 1.09863 1.13582 1.74970 1.04668 1.19058 1.16691 0.77868 0.91137 0.89940 0.94677 0.91523 0.87505 0.76541 0.82017 0.80754 0.81738 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -13.28 19.25 74.32 1.43 -11.85 16 2 C -0.11 -4.93 11.01 31.12 0.34 -4.59 16 3 C 0.26 11.50 5.45 84.57 0.46 11.96 16 4 N -0.58 -26.94 2.49 -716.91 -1.79 -28.72 16 5 C -0.26 -13.69 9.66 84.04 0.81 -12.88 16 6 H 0.07 3.81 7.90 -2.91 -0.02 3.79 16 7 C -0.05 -2.48 4.85 84.86 0.41 -2.07 16 8 N -0.91 -52.56 9.49 21.65 0.21 -52.35 16 9 Si 0.96 45.64 29.61 68.60 2.03 47.67 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.31 -15.07 7.11 99.48 0.71 -14.37 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.22 8.15 6.26 85.63 0.54 8.69 16 14 C -0.02 -0.99 6.52 41.60 0.27 -0.72 16 15 C -0.03 -1.08 10.57 83.37 0.88 -0.20 16 16 N -0.25 -8.32 3.56 -187.03 -0.67 -8.99 16 17 C 0.11 2.87 6.68 38.07 0.25 3.12 16 18 C -0.10 -1.91 9.46 22.38 0.21 -1.70 16 19 C -0.08 -1.14 9.82 22.28 0.22 -0.93 16 20 C -0.04 -0.58 6.32 22.34 0.14 -0.43 16 21 Cl -0.05 -0.73 28.95 -2.72 -0.08 -0.81 16 22 C -0.09 -1.48 9.82 22.27 0.22 -1.26 16 23 C -0.11 -2.48 9.62 22.38 0.22 -2.26 16 24 N -0.12 -5.07 12.41 37.02 0.46 -4.61 16 25 N -0.29 -13.17 12.39 -48.59 -0.60 -13.77 16 26 H 0.20 7.59 7.80 -4.41 -0.03 7.56 16 27 H 0.07 3.50 6.42 -2.39 -0.02 3.48 16 28 H 0.08 2.82 7.97 -2.39 -0.02 2.80 16 29 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.07 2.54 8.02 -2.38 -0.02 2.52 16 31 H 0.11 3.03 7.95 -2.39 -0.02 3.02 16 32 H 0.22 5.16 7.11 -2.91 -0.02 5.14 16 33 H 0.16 2.36 6.77 -2.91 -0.02 2.34 16 34 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.14 3.50 7.69 -2.91 -0.02 3.48 16 Total: -1.00 -71.67 337.57 7.08 -64.59 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.11 Total: 12.10 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 6.41 Total: -15.11 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -2.39 Total: -108.45 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -71.67 7.08 -64.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491645648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 262.211 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds