Wall clock time and date at job start Tue Mar 31 2020 10:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47380 * 2 1 4 4 H 1.08992 * 109.47417 * 175.22635 * 3 2 1 5 5 C 1.50701 * 109.46909 * 55.22121 * 3 2 1 6 6 H 1.08003 * 120.00463 * 245.72360 * 5 3 2 7 7 C 1.37883 * 119.99555 * 65.72774 * 5 3 2 8 8 N 1.31510 * 120.00124 * 5.51508 * 7 5 3 9 9 Si 1.86803 * 119.99690 * 185.51233 * 7 5 3 10 10 H 1.48505 * 109.47172 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47451 * 300.00235 * 9 7 5 12 12 H 1.48499 * 109.47176 * 60.00105 * 9 7 5 13 13 N 1.46901 * 109.47324 * 295.22619 * 3 2 1 14 14 C 1.46896 * 110.99922 * 279.79729 * 13 3 2 15 15 C 1.50703 * 109.47407 * 184.95352 * 14 13 3 16 16 O 1.21285 * 119.99613 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00173 * 180.02562 * 15 14 13 18 18 C 1.46504 * 119.99581 * 179.97438 * 17 15 14 19 19 C 1.50708 * 109.46502 * 179.97438 * 18 17 15 20 20 C 1.33346 * 125.18837 * 89.72440 * 19 18 17 21 21 C 1.38473 * 114.92514 * 179.79325 * 20 19 18 22 22 C 1.33495 * 114.88884 * 0.48855 * 21 20 19 23 23 Cl 1.73597 * 125.21528 * 179.75751 * 22 21 20 24 24 S 1.75879 * 125.18585 * 270.02101 * 19 18 17 25 25 H 1.09007 * 109.46933 * 184.94980 * 1 2 3 26 26 H 1.08995 * 109.46850 * 304.94498 * 1 2 3 27 27 H 1.08995 * 109.47354 * 64.94589 * 1 2 3 28 28 H 1.08999 * 109.46631 * 239.99865 * 2 1 3 29 29 H 1.09002 * 109.47257 * 120.00344 * 2 1 3 30 30 H 0.96997 * 119.99995 * 355.15403 * 8 7 5 31 31 H 1.00897 * 111.00065 * 155.83926 * 13 3 2 32 32 H 1.09009 * 109.46898 * 304.94878 * 14 13 3 33 33 H 1.08996 * 109.47797 * 64.95086 * 14 13 3 34 34 H 0.96996 * 120.00048 * 359.97438 * 17 15 14 35 35 H 1.08994 * 109.47068 * 299.99039 * 18 17 15 36 36 H 1.08998 * 109.47270 * 60.00130 * 18 17 15 37 37 H 1.07998 * 122.53531 * 359.96881 * 20 19 18 38 38 H 1.08000 * 122.55696 * 180.23648 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1266 1.4436 0.0855 5 6 1.4434 2.1861 1.1670 6 1 0.7592 3.0036 0.9937 7 6 1.7712 1.8230 2.4562 8 7 2.6854 0.9016 2.6675 9 14 0.9167 2.6401 3.9025 10 1 1.4439 2.0769 5.1714 11 1 1.1711 4.1026 3.8660 12 1 -0.5447 2.3897 3.8198 13 7 1.6468 2.1009 -1.2529 14 6 2.5539 1.7329 -2.3482 15 6 2.1947 2.5183 -3.5833 16 8 1.2735 3.3065 -3.5540 17 7 2.8966 2.3439 -4.7205 18 6 2.5470 3.1070 -5.9213 19 6 3.4777 2.7295 -7.0449 20 6 3.2686 1.7430 -7.9174 21 6 4.2627 1.5844 -8.8682 22 6 5.2843 2.4368 -8.7605 23 17 6.6721 2.4729 -9.8027 24 16 5.0089 3.5182 -7.4009 25 1 -0.3633 -1.0239 0.0887 26 1 -0.3633 0.5886 0.8424 27 1 -0.3634 0.4352 -0.9309 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.0785 0.4276 1.9181 31 1 1.6065 3.1025 -1.1378 32 1 3.5810 1.9579 -2.0605 33 1 2.4599 0.6670 -2.5554 34 1 3.6331 1.7132 -4.7440 35 1 1.5200 2.8818 -6.2086 36 1 2.6412 4.1730 -5.7145 37 1 2.3890 1.1171 -7.8865 38 1 4.2170 0.8260 -9.6358 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577290339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:30 Heat of formation + Delta-G solvation = -14.576541 kcal Electronic energy + Delta-G solvation = -20888.137608 eV Core-core repulsion = 17496.958296 eV Total energy + Delta-G solvation = -3391.179312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66675 -38.50186 -37.13416 -36.37906 -34.81014 -32.76125 -30.96709 -30.48266 -27.55346 -26.05864 -24.31167 -23.51975 -23.17029 -20.50856 -19.96229 -19.26273 -18.27961 -17.36521 -16.40286 -16.21045 -15.87066 -15.54720 -14.46121 -14.28168 -14.06512 -13.94422 -13.74347 -13.58717 -13.35819 -13.12555 -12.94143 -12.50444 -12.04331 -11.98959 -11.83405 -11.63072 -11.51888 -11.15844 -11.13099 -10.75946 -10.17509 -10.08802 -10.04269 -9.74661 -9.67857 -9.20061 -9.06688 -9.01067 -8.53894 -8.31453 -7.42772 -6.35048 -4.06777 0.23161 0.60411 1.32380 1.74670 2.05670 2.81593 3.24558 3.45049 3.47373 3.65257 4.16515 4.51890 4.71215 4.83398 5.00910 5.14255 5.22680 5.37546 5.40274 5.45223 5.58155 5.74172 5.76005 5.83787 6.27126 6.29073 6.39776 6.59246 6.90445 7.01563 7.23742 7.37601 7.45854 7.58330 7.84189 8.08332 8.32254 8.50076 8.57461 8.86876 9.63471 11.01713 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.002149 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.469058 B =13025.455741 C =13131.557305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 C 0.204 3.796 4 H -0.008 1.008 5 C -0.590 4.590 6 H 0.056 0.944 7 C 0.023 3.977 8 N -0.913 5.913 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.663 5.663 14 C 0.042 3.958 15 C 0.515 3.485 16 O -0.522 6.522 17 N -0.738 5.738 18 C 0.194 3.806 19 C -0.193 4.193 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.149 4.149 23 Cl -0.014 7.014 24 S 0.170 5.830 25 H 0.017 0.983 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.019 0.981 29 H 0.059 0.941 30 H 0.270 0.730 31 H 0.345 0.655 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.152 0.848 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 1.148 -24.731 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.146 4.146 3 C 0.096 3.904 4 H 0.010 0.990 5 C -0.628 4.628 6 H 0.074 0.926 7 C -0.182 4.182 8 N -0.549 5.549 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.296 5.296 14 C -0.091 4.091 15 C 0.302 3.698 16 O -0.396 6.396 17 N -0.393 5.393 18 C 0.068 3.932 19 C -0.312 4.312 20 C -0.141 4.141 21 C -0.153 4.153 22 C -0.293 4.293 23 Cl 0.015 6.985 24 S 0.434 5.566 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.170 0.830 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.168 2.551 -22.643 23.606 hybrid contribution 0.679 -1.185 -2.437 2.793 sum 6.847 1.367 -25.080 26.033 Atomic orbital electron populations 1.21463 0.96293 0.97884 1.02244 1.21540 0.96628 0.98152 0.98307 1.19325 0.93161 0.91767 0.86141 0.99021 1.21910 1.30605 1.18732 0.91570 0.92596 1.25719 0.95489 0.96901 1.00072 1.70809 1.24280 1.24162 1.35678 0.83563 0.75758 0.75485 0.75637 1.20912 1.21536 1.21309 1.60411 1.49276 1.14641 1.05274 1.21860 0.96409 0.99971 0.90865 1.21061 0.81661 0.82774 0.84266 1.90699 1.28728 1.35985 1.84205 1.46145 1.37141 1.45512 1.10518 1.19601 0.96067 0.96639 0.80876 1.24664 1.00305 1.02578 1.03635 1.20089 1.00773 0.98618 0.94604 1.20223 0.92850 1.00666 1.01519 1.25383 0.96456 1.05589 1.01855 1.98381 1.38517 1.97790 1.63812 1.84651 1.15636 1.33222 1.23120 0.96390 0.91701 0.93496 0.96222 0.92259 0.91800 0.83595 0.93304 0.88894 0.76468 0.89213 0.90307 0.83025 0.83158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.53 37.16 0.35 -2.35 16 2 C -0.11 -2.48 5.47 -26.73 -0.15 -2.62 16 3 C 0.20 4.95 1.92 -68.87 -0.13 4.82 16 4 H -0.01 -0.20 7.31 -51.93 -0.38 -0.58 16 5 C -0.59 -15.99 6.92 -34.44 -0.24 -16.22 16 6 H 0.06 1.55 7.75 -52.48 -0.41 1.14 16 7 C 0.02 0.63 5.29 -17.82 -0.09 0.53 16 8 N -0.91 -26.61 13.20 55.43 0.73 -25.88 16 9 Si 1.07 24.91 29.91 -169.99 -5.08 19.83 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.66 -14.18 5.54 -109.23 -0.60 -14.79 16 14 C 0.04 0.70 5.99 -4.98 -0.03 0.67 16 15 C 0.52 8.00 7.86 -10.99 -0.09 7.91 16 16 O -0.52 -10.09 16.09 5.55 0.09 -10.00 16 17 N -0.74 -8.18 5.55 -61.47 -0.34 -8.52 16 18 C 0.19 1.89 6.16 -5.19 -0.03 1.86 16 19 C -0.19 -1.57 5.88 -36.01 -0.21 -1.78 16 20 C -0.11 -0.78 10.05 -41.20 -0.41 -1.20 16 21 C -0.12 -0.85 10.13 -41.15 -0.42 -1.27 16 22 C -0.15 -1.18 7.10 29.07 0.21 -0.97 16 23 Cl -0.01 -0.10 29.29 -51.86 -1.52 -1.62 16 24 S 0.17 1.37 23.33 -107.50 -2.51 -1.13 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 1.58 6.89 -51.93 -0.36 1.22 16 27 H 0.05 1.02 7.89 -51.93 -0.41 0.61 16 28 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 29 H 0.06 1.48 6.18 -51.93 -0.32 1.16 16 30 H 0.27 7.79 5.62 -40.82 -0.23 7.56 16 31 H 0.34 7.76 7.88 -39.29 -0.31 7.45 16 32 H 0.05 0.78 7.95 -51.92 -0.41 0.37 16 33 H 0.09 1.45 7.20 -51.93 -0.37 1.08 16 34 H 0.40 3.59 8.46 -40.82 -0.35 3.24 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 347.32 15.07 5.23 5.23 Total: -1.00 -30.94 347.32 -10.07 -41.01 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.83 Total: 6.50 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.24 Total: -10.62 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.21 Total: -49.19 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.51 Total: -1.13 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.62 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.94 -10.07 -41.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577290339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.433 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds