Wall clock time and date at job start Tue Mar 31 2020 10:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47380 * 2 1 4 4 H 1.08992 * 109.47417 * 175.22635 * 3 2 1 5 5 C 1.50701 * 109.46909 * 55.22121 * 3 2 1 6 6 H 1.08003 * 120.00463 * 245.72360 * 5 3 2 7 7 C 1.37883 * 119.99555 * 65.72774 * 5 3 2 8 8 N 1.31510 * 120.00124 * 5.51508 * 7 5 3 9 9 Si 1.86803 * 119.99690 * 185.51233 * 7 5 3 10 10 H 1.48505 * 109.47172 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47451 * 300.00235 * 9 7 5 12 12 H 1.48499 * 109.47176 * 60.00105 * 9 7 5 13 13 N 1.46901 * 109.47324 * 295.22619 * 3 2 1 14 14 C 1.46896 * 110.99922 * 279.79729 * 13 3 2 15 15 C 1.50703 * 109.47407 * 184.95352 * 14 13 3 16 16 O 1.21285 * 119.99613 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00173 * 180.02562 * 15 14 13 18 18 C 1.46504 * 119.99581 * 179.97438 * 17 15 14 19 19 C 1.50708 * 109.46502 * 179.97438 * 18 17 15 20 20 C 1.33346 * 125.18837 * 89.72440 * 19 18 17 21 21 C 1.38473 * 114.92514 * 179.79325 * 20 19 18 22 22 C 1.33495 * 114.88884 * 0.48855 * 21 20 19 23 23 Cl 1.73597 * 125.21528 * 179.75751 * 22 21 20 24 24 S 1.75879 * 125.18585 * 270.02101 * 19 18 17 25 25 H 1.09007 * 109.46933 * 184.94980 * 1 2 3 26 26 H 1.08995 * 109.46850 * 304.94498 * 1 2 3 27 27 H 1.08995 * 109.47354 * 64.94589 * 1 2 3 28 28 H 1.08999 * 109.46631 * 239.99865 * 2 1 3 29 29 H 1.09002 * 109.47257 * 120.00344 * 2 1 3 30 30 H 0.96997 * 119.99995 * 355.15403 * 8 7 5 31 31 H 1.00897 * 111.00065 * 155.83926 * 13 3 2 32 32 H 1.09009 * 109.46898 * 304.94878 * 14 13 3 33 33 H 1.08996 * 109.47797 * 64.95086 * 14 13 3 34 34 H 0.96996 * 120.00048 * 359.97438 * 17 15 14 35 35 H 1.08994 * 109.47068 * 299.99039 * 18 17 15 36 36 H 1.08998 * 109.47270 * 60.00130 * 18 17 15 37 37 H 1.07998 * 122.53531 * 359.96881 * 20 19 18 38 38 H 1.08000 * 122.55696 * 180.23648 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1266 1.4436 0.0855 5 6 1.4434 2.1861 1.1670 6 1 0.7592 3.0036 0.9937 7 6 1.7712 1.8230 2.4562 8 7 2.6854 0.9016 2.6675 9 14 0.9167 2.6401 3.9025 10 1 1.4439 2.0769 5.1714 11 1 1.1711 4.1026 3.8660 12 1 -0.5447 2.3897 3.8198 13 7 1.6468 2.1009 -1.2529 14 6 2.5539 1.7329 -2.3482 15 6 2.1947 2.5183 -3.5833 16 8 1.2735 3.3065 -3.5540 17 7 2.8966 2.3439 -4.7205 18 6 2.5470 3.1070 -5.9213 19 6 3.4777 2.7295 -7.0449 20 6 3.2686 1.7430 -7.9174 21 6 4.2627 1.5844 -8.8682 22 6 5.2843 2.4368 -8.7605 23 17 6.6721 2.4729 -9.8027 24 16 5.0089 3.5182 -7.4009 25 1 -0.3633 -1.0239 0.0887 26 1 -0.3633 0.5886 0.8424 27 1 -0.3634 0.4352 -0.9309 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.0785 0.4276 1.9181 31 1 1.6065 3.1025 -1.1378 32 1 3.5810 1.9579 -2.0605 33 1 2.4599 0.6670 -2.5554 34 1 3.6331 1.7132 -4.7440 35 1 1.5200 2.8818 -6.2086 36 1 2.6412 4.1730 -5.7145 37 1 2.3890 1.1171 -7.8865 38 1 4.2170 0.8260 -9.6358 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577290339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:30 Heat of formation + Delta-G solvation = -34.761879 kcal Electronic energy + Delta-G solvation = -20889.012910 eV Core-core repulsion = 17496.958296 eV Total energy + Delta-G solvation = -3392.054614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85887 -39.18487 -38.19793 -37.71054 -35.84108 -34.60243 -32.63741 -31.53601 -28.96943 -27.23897 -25.90059 -25.23455 -24.01284 -21.75637 -21.10071 -20.55165 -19.39294 -18.75451 -17.65374 -17.25719 -16.88034 -16.69561 -15.93607 -15.64019 -15.60337 -15.25653 -14.84345 -14.73317 -14.46355 -14.24451 -13.87766 -13.74520 -13.58718 -13.37484 -13.14260 -13.00583 -12.61498 -12.59347 -12.16333 -11.99690 -11.94662 -11.84385 -11.74654 -11.59548 -11.00856 -10.57799 -10.38120 -10.22293 -9.72213 -9.62977 -9.15250 -8.53956 -6.25750 -0.38414 -0.00059 0.72578 1.15059 1.46188 1.56096 1.57746 1.62694 1.81769 2.20723 2.59323 3.24599 3.46413 3.56907 3.84676 4.09414 4.24994 4.31832 4.39527 4.49101 4.52206 4.57608 4.61299 4.75926 4.86476 5.00645 5.02776 5.20254 5.25079 5.29517 5.39292 5.50741 5.73026 5.89174 6.10261 6.37563 6.53464 6.60402 6.79825 7.18333 7.51347 8.83876 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.002149 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.469058 B =13025.455741 C =13131.557305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C 0.208 3.792 4 H -0.031 1.031 5 C -0.596 4.596 6 H 0.044 0.956 7 C -0.022 4.022 8 N -0.936 5.936 9 Si 1.107 2.893 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.274 1.274 13 N -0.668 5.668 14 C 0.040 3.960 15 C 0.522 3.478 16 O -0.565 6.565 17 N -0.716 5.716 18 C 0.196 3.804 19 C -0.201 4.201 20 C -0.099 4.099 21 C -0.118 4.118 22 C -0.156 4.156 23 Cl -0.013 7.013 24 S 0.157 5.843 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.262 0.738 31 H 0.335 0.665 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.414 0.586 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.170 0.830 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.221 0.484 -26.271 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.141 4.141 3 C 0.099 3.901 4 H -0.014 1.014 5 C -0.634 4.634 6 H 0.062 0.938 7 C -0.221 4.221 8 N -0.574 5.574 9 Si 0.931 3.069 10 H -0.211 1.211 11 H -0.201 1.201 12 H -0.200 1.200 13 N -0.299 5.299 14 C -0.092 4.092 15 C 0.309 3.691 16 O -0.442 6.442 17 N -0.371 5.371 18 C 0.072 3.928 19 C -0.319 4.319 20 C -0.130 4.130 21 C -0.150 4.150 22 C -0.300 4.300 23 Cl 0.016 6.984 24 S 0.420 5.580 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.251 0.749 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.187 0.813 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.023 1.871 -24.240 25.047 hybrid contribution 0.798 -0.995 -2.107 2.463 sum 6.821 0.876 -26.347 27.230 Atomic orbital electron populations 1.21348 0.95528 0.98924 1.01158 1.21437 0.97181 0.97095 0.98414 1.19160 0.91484 0.92598 0.86809 1.01371 1.22170 1.29978 1.18429 0.92864 0.93772 1.26919 0.95450 0.96916 1.02802 1.70906 1.25697 1.25417 1.35407 0.83033 0.75525 0.75421 0.72949 1.21087 1.20110 1.19966 1.60319 1.50755 1.13757 1.05109 1.21921 0.96004 1.01125 0.90146 1.20725 0.81423 0.82085 0.84856 1.90690 1.30793 1.37840 1.84914 1.45930 1.36353 1.45024 1.09777 1.19589 0.96680 0.96030 0.80548 1.24436 1.00234 1.03459 1.03751 1.20314 1.01071 0.97944 0.93709 1.20467 0.92216 1.00630 1.01683 1.25511 0.96876 1.05765 1.01885 1.98383 1.38538 1.97788 1.63704 1.84712 1.15876 1.33706 1.23683 0.93967 0.94384 0.93148 0.93595 0.94536 0.92691 0.84689 0.92265 0.87238 0.74906 0.88974 0.91008 0.81290 0.81250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.87 9.53 71.98 0.69 -4.18 16 2 C -0.10 -4.65 5.47 30.59 0.17 -4.49 16 3 C 0.21 10.15 1.92 44.17 0.08 10.24 16 4 H -0.03 -1.64 7.31 -2.39 -0.02 -1.66 16 5 C -0.60 -32.68 6.92 25.60 0.18 -32.50 16 6 H 0.04 2.48 7.75 -2.91 -0.02 2.46 16 7 C -0.02 -1.21 5.29 84.66 0.45 -0.76 16 8 N -0.94 -55.25 13.20 21.45 0.28 -54.97 16 9 Si 1.11 50.18 29.91 68.60 2.05 52.23 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.67 -28.41 5.54 -499.48 -2.77 -31.17 16 14 C 0.04 1.31 5.99 85.56 0.51 1.82 16 15 C 0.52 15.59 7.86 87.66 0.69 16.28 16 16 O -0.56 -21.61 16.09 -3.04 -0.05 -21.66 16 17 N -0.72 -14.60 5.55 -466.77 -2.59 -17.19 16 18 C 0.20 3.53 6.16 85.63 0.53 4.06 16 19 C -0.20 -2.87 5.88 24.58 0.14 -2.72 16 20 C -0.10 -1.15 10.05 21.22 0.21 -0.93 16 21 C -0.12 -1.36 10.13 21.25 0.22 -1.14 16 22 C -0.16 -2.19 7.10 66.74 0.47 -1.72 16 23 Cl -0.01 -0.17 29.29 -2.72 -0.08 -0.25 16 24 S 0.16 2.33 23.33 -56.49 -1.32 1.01 16 25 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.04 1.82 6.89 -2.39 -0.02 1.81 16 27 H 0.05 2.12 7.89 -2.39 -0.02 2.10 16 28 H 0.05 1.81 7.13 -2.39 -0.02 1.79 16 29 H 0.04 1.82 6.18 -2.39 -0.01 1.80 16 30 H 0.26 15.43 5.62 -92.71 -0.52 14.90 16 31 H 0.34 15.27 7.88 -89.70 -0.71 14.57 16 32 H 0.06 1.82 7.95 -2.38 -0.02 1.81 16 33 H 0.11 3.17 7.20 -2.39 -0.02 3.15 16 34 H 0.41 6.42 8.46 -92.71 -0.78 5.63 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -66.56 347.32 -0.27 -66.83 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -0.14 Total: 21.22 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.34 Total: -16.05 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -5.07 Total: -103.34 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.23 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.32 Total: 1.01 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -66.56 -0.27 -66.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577290339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.066 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds