Wall clock time and date at job start Tue Mar 31 2020 10:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 H 1.08995 * 109.46771 * 54.86634 * 3 2 1 5 5 C 1.50699 * 109.46684 * 174.86904 * 3 2 1 6 6 H 1.08006 * 120.00017 * 120.00159 * 5 3 2 7 7 C 1.37880 * 120.00041 * 299.99447 * 5 3 2 8 8 N 1.31515 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46900 * 90.00436 * 9 7 5 11 11 H 1.48499 * 109.47223 * 210.00310 * 9 7 5 12 12 H 1.48500 * 109.47001 * 330.00467 * 9 7 5 13 13 N 1.46897 * 109.46794 * 294.86580 * 3 2 1 14 14 C 1.46903 * 110.99675 * 154.16648 * 13 3 2 15 15 C 1.50696 * 109.47188 * 185.23208 * 14 13 3 16 16 O 1.21281 * 120.00296 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00569 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47303 * 180.02562 * 18 17 15 20 20 C 1.33346 * 125.19372 * 89.99900 * 19 18 17 21 21 C 1.38475 * 114.93523 * 180.02562 * 20 19 18 22 22 C 1.33506 * 114.87843 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 125.20743 * 179.97438 * 22 21 20 24 24 S 1.75882 * 125.18671 * 269.69479 * 19 18 17 25 25 H 1.08998 * 109.47669 * 55.45060 * 1 2 3 26 26 H 1.08999 * 109.47301 * 175.46186 * 1 2 3 27 27 H 1.09004 * 109.46557 * 295.45510 * 1 2 3 28 28 H 1.08998 * 109.46361 * 240.00229 * 2 1 3 29 29 H 1.08996 * 109.46995 * 120.00334 * 2 1 3 30 30 H 0.96990 * 120.00199 * 179.97438 * 8 7 5 31 31 H 1.00906 * 111.00395 * 278.11698 * 13 3 2 32 32 H 1.09001 * 109.47166 * 305.23045 * 14 13 3 33 33 H 1.09007 * 109.47143 * 65.23403 * 14 13 3 34 34 H 0.97003 * 119.99794 * 359.97438 * 17 15 14 35 35 H 1.09001 * 109.46595 * 299.99738 * 18 17 15 36 36 H 1.08997 * 109.47473 * 59.99651 * 18 17 15 37 37 H 1.07995 * 122.53370 * 359.97438 * 20 19 18 38 38 H 1.07995 * 122.56334 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6036 1.9821 0.8404 5 6 3.5417 1.4443 0.1271 6 1 4.1487 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4015 0.3383 2.1768 9 14 6.0019 0.8821 1.3908 10 1 6.4371 2.1156 2.0940 11 1 6.4348 -0.3083 2.1658 12 1 6.6135 0.8414 0.0382 13 7 1.6542 2.0982 -1.2566 14 6 1.5557 3.5536 -1.0823 15 6 1.0354 4.1774 -2.3515 16 8 0.7720 3.4786 -3.3071 17 7 0.8627 5.5121 -2.4249 18 6 0.3564 6.1186 -3.6585 19 6 0.2567 7.6117 -3.4802 20 6 1.2269 8.4847 -3.7533 21 6 0.9059 9.8095 -3.5091 22 6 -0.3268 10.0110 -3.0376 23 17 -1.0058 11.5585 -2.6401 24 16 -1.1597 8.4692 -2.8870 25 1 -0.3634 0.5828 -0.8464 26 1 -0.3634 -1.0244 -0.0813 27 1 -0.3632 0.4417 0.9280 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8229 -0.0595 2.9545 31 1 2.2975 1.8656 -1.9983 32 1 0.8734 3.7759 -0.2619 33 1 2.5415 3.9598 -0.8553 34 1 1.0730 6.0711 -1.6605 35 1 1.0382 5.8958 -4.4792 36 1 -0.6296 5.7127 -3.8849 37 1 2.1904 8.1816 -4.1354 38 1 1.5997 10.6179 -3.6865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577290340.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:33 Heat of formation + Delta-G solvation = -14.682723 kcal Electronic energy + Delta-G solvation = -20848.301497 eV Core-core repulsion = 17457.117581 eV Total energy + Delta-G solvation = -3391.183916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.50117 -38.41343 -37.06844 -35.99078 -34.66431 -32.48541 -31.21347 -30.50173 -27.53923 -26.24693 -24.64327 -23.30086 -22.38502 -20.29267 -19.86945 -19.53460 -18.12993 -16.87106 -16.44753 -16.21431 -15.80105 -15.21122 -14.77124 -14.28276 -14.11723 -13.76963 -13.61343 -13.55522 -13.22490 -12.94146 -12.58135 -12.39479 -11.99845 -11.91858 -11.75116 -11.47345 -11.22826 -11.17070 -11.10062 -10.89569 -10.68694 -10.18550 -9.82232 -9.57350 -9.43631 -9.11335 -9.06787 -8.96436 -8.92388 -8.40878 -7.29667 -6.03177 -4.16971 0.29859 0.66598 1.38855 1.80512 2.12378 2.98641 3.23970 3.32093 3.34776 3.39038 4.24618 4.36385 4.78334 4.90368 5.15077 5.21519 5.22669 5.46942 5.49680 5.54760 5.65189 5.89904 5.93586 6.12480 6.41415 6.43057 6.56286 6.74759 7.09291 7.22353 7.39892 7.52074 7.62945 7.75683 8.06341 8.09200 8.27732 8.48931 8.62773 8.95672 9.51050 10.96695 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.002407 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.070804 B =11628.068461 C =12291.762778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.549 4.549 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.051 3.949 15 C 0.515 3.485 16 O -0.525 6.525 17 N -0.739 5.739 18 C 0.194 3.806 19 C -0.192 4.192 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.150 4.150 23 Cl -0.015 7.015 24 S 0.170 5.830 25 H 0.051 0.949 26 H 0.025 0.975 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.262 0.738 31 H 0.337 0.663 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.401 0.599 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.152 0.848 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 20.282 -9.375 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.588 4.588 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.303 5.303 14 C -0.082 4.082 15 C 0.302 3.698 16 O -0.399 6.399 17 N -0.395 5.395 18 C 0.068 3.932 19 C -0.310 4.310 20 C -0.142 4.142 21 C -0.152 4.152 22 C -0.294 4.294 23 Cl 0.014 6.986 24 S 0.434 5.566 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.169 0.831 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.790 19.241 -9.282 23.499 hybrid contribution 3.472 1.300 0.220 3.714 sum -6.318 20.540 -9.062 23.323 Atomic orbital electron populations 1.21726 0.98961 0.98644 1.00383 1.21481 0.92196 0.98941 1.01747 1.19189 0.92899 0.91504 0.85593 0.94903 1.21867 0.92684 1.38666 1.05565 0.92809 1.24929 0.97974 0.94861 0.95680 1.69874 1.34879 1.38032 1.09384 0.86645 0.85956 0.77563 0.78129 1.20755 1.21114 1.19971 1.60627 1.55979 1.03384 1.10305 1.21657 1.00463 0.92718 0.93377 1.21283 0.76923 0.80843 0.90780 1.90670 1.49336 1.61252 1.38683 1.46179 1.69357 1.08039 1.15922 1.19578 1.00999 0.83887 0.88713 1.24677 0.97635 0.99813 1.08861 1.20084 1.00657 0.91171 1.02295 1.20222 0.95290 0.98185 1.01526 1.25378 0.99179 0.92384 1.12431 1.98379 1.84224 1.23620 1.92394 1.84629 1.14574 0.93746 1.63680 0.92962 0.95587 0.94617 0.94956 0.89086 0.92804 0.84551 0.89063 0.92374 0.76468 0.89399 0.90367 0.83062 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.85 37.16 0.37 -2.57 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.22 1.97 -68.87 -0.14 5.09 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.39 8.47 -34.44 -0.29 -14.68 16 6 H 0.05 1.40 7.73 -52.48 -0.41 1.00 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.80 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.67 -14.27 5.17 -109.22 -0.56 -14.83 16 14 C 0.05 0.89 5.99 -4.98 -0.03 0.86 16 15 C 0.51 8.24 7.88 -10.99 -0.09 8.15 16 16 O -0.53 -10.29 16.32 5.56 0.09 -10.20 16 17 N -0.74 -8.66 5.55 -61.48 -0.34 -9.00 16 18 C 0.19 1.98 6.16 -5.20 -0.03 1.95 16 19 C -0.19 -1.64 5.88 -36.02 -0.21 -1.85 16 20 C -0.11 -0.85 10.05 -41.20 -0.41 -1.26 16 21 C -0.12 -0.90 10.13 -41.15 -0.42 -1.32 16 22 C -0.15 -1.25 7.10 29.08 0.21 -1.04 16 23 Cl -0.01 -0.12 29.29 -51.86 -1.52 -1.64 16 24 S 0.17 1.43 23.33 -107.50 -2.51 -1.07 16 25 H 0.05 1.09 7.64 -51.93 -0.40 0.69 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 2.41 5.95 -51.93 -0.31 2.11 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.34 7.42 8.29 -39.29 -0.33 7.09 16 32 H 0.09 1.52 7.92 -51.93 -0.41 1.11 16 33 H 0.06 1.01 8.11 -51.92 -0.42 0.59 16 34 H 0.40 3.91 8.46 -40.82 -0.35 3.56 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -29.34 352.96 -10.31 -39.66 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.11 Total: 7.55 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.29 Total: -7.63 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.28 Total: -47.63 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.51 Total: -1.07 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.34 -10.31 -39.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577290340.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.974 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds