Wall clock time and date at job start Tue Mar 31 2020 10:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 H 1.08995 * 109.46771 * 54.86634 * 3 2 1 5 5 C 1.50699 * 109.46684 * 174.86904 * 3 2 1 6 6 H 1.08006 * 120.00017 * 120.00159 * 5 3 2 7 7 C 1.37880 * 120.00041 * 299.99447 * 5 3 2 8 8 N 1.31515 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46900 * 90.00436 * 9 7 5 11 11 H 1.48499 * 109.47223 * 210.00310 * 9 7 5 12 12 H 1.48500 * 109.47001 * 330.00467 * 9 7 5 13 13 N 1.46897 * 109.46794 * 294.86580 * 3 2 1 14 14 C 1.46903 * 110.99675 * 154.16648 * 13 3 2 15 15 C 1.50696 * 109.47188 * 185.23208 * 14 13 3 16 16 O 1.21281 * 120.00296 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00569 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47303 * 180.02562 * 18 17 15 20 20 C 1.33346 * 125.19372 * 89.99900 * 19 18 17 21 21 C 1.38475 * 114.93523 * 180.02562 * 20 19 18 22 22 C 1.33506 * 114.87843 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 125.20743 * 179.97438 * 22 21 20 24 24 S 1.75882 * 125.18671 * 269.69479 * 19 18 17 25 25 H 1.08998 * 109.47669 * 55.45060 * 1 2 3 26 26 H 1.08999 * 109.47301 * 175.46186 * 1 2 3 27 27 H 1.09004 * 109.46557 * 295.45510 * 1 2 3 28 28 H 1.08998 * 109.46361 * 240.00229 * 2 1 3 29 29 H 1.08996 * 109.46995 * 120.00334 * 2 1 3 30 30 H 0.96990 * 120.00199 * 179.97438 * 8 7 5 31 31 H 1.00906 * 111.00395 * 278.11698 * 13 3 2 32 32 H 1.09001 * 109.47166 * 305.23045 * 14 13 3 33 33 H 1.09007 * 109.47143 * 65.23403 * 14 13 3 34 34 H 0.97003 * 119.99794 * 359.97438 * 17 15 14 35 35 H 1.09001 * 109.46595 * 299.99738 * 18 17 15 36 36 H 1.08997 * 109.47473 * 59.99651 * 18 17 15 37 37 H 1.07995 * 122.53370 * 359.97438 * 20 19 18 38 38 H 1.07995 * 122.56334 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6036 1.9821 0.8404 5 6 3.5417 1.4443 0.1271 6 1 4.1487 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4015 0.3383 2.1768 9 14 6.0019 0.8821 1.3908 10 1 6.4371 2.1156 2.0940 11 1 6.4348 -0.3083 2.1658 12 1 6.6135 0.8414 0.0382 13 7 1.6542 2.0982 -1.2566 14 6 1.5557 3.5536 -1.0823 15 6 1.0354 4.1774 -2.3515 16 8 0.7720 3.4786 -3.3071 17 7 0.8627 5.5121 -2.4249 18 6 0.3564 6.1186 -3.6585 19 6 0.2567 7.6117 -3.4802 20 6 1.2269 8.4847 -3.7533 21 6 0.9059 9.8095 -3.5091 22 6 -0.3268 10.0110 -3.0376 23 17 -1.0058 11.5585 -2.6401 24 16 -1.1597 8.4692 -2.8870 25 1 -0.3634 0.5828 -0.8464 26 1 -0.3634 -1.0244 -0.0813 27 1 -0.3632 0.4417 0.9280 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8229 -0.0595 2.9545 31 1 2.2975 1.8656 -1.9983 32 1 0.8734 3.7759 -0.2619 33 1 2.5415 3.9598 -0.8553 34 1 1.0730 6.0711 -1.6605 35 1 1.0382 5.8958 -4.4792 36 1 -0.6296 5.7127 -3.8849 37 1 2.1904 8.1816 -4.1354 38 1 1.5997 10.6179 -3.6865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577290340.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:32 Heat of formation + Delta-G solvation = -32.954792 kcal Electronic energy + Delta-G solvation = -20849.093834 eV Core-core repulsion = 17457.117581 eV Total energy + Delta-G solvation = -3391.976253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71909 -39.13473 -37.84809 -37.62615 -35.74145 -34.35259 -32.94648 -31.47105 -29.09327 -27.48158 -26.02487 -24.41559 -23.83893 -21.54878 -21.36309 -20.52246 -19.03388 -18.66003 -17.67947 -17.17071 -16.83478 -16.65558 -16.32828 -15.61010 -15.38450 -14.90470 -14.75794 -14.61953 -14.36085 -14.08783 -13.77566 -13.70094 -13.49763 -13.10218 -13.06629 -12.97146 -12.70952 -12.58636 -12.50255 -12.13762 -12.05809 -11.72179 -11.56367 -11.48106 -11.07279 -10.80816 -10.43906 -10.13834 -9.68944 -9.59676 -9.05485 -8.03921 -6.26281 -0.35371 0.02811 0.75450 1.17597 1.40261 1.43373 1.49258 1.51864 1.69697 2.30080 2.42811 3.16431 3.50780 3.78884 3.99284 4.14102 4.27893 4.47474 4.55296 4.64887 4.65815 4.68496 4.79467 4.88918 4.94855 5.03569 5.17973 5.28742 5.37627 5.44220 5.52308 5.63115 5.77630 6.08265 6.18598 6.33584 6.52387 6.78653 6.98757 7.29401 7.45323 8.92719 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.002407 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.070804 B =11628.068461 C =12291.762778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.223 3.777 4 H 0.011 0.989 5 C -0.561 4.561 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.050 3.950 15 C 0.523 3.477 16 O -0.564 6.564 17 N -0.719 5.719 18 C 0.197 3.803 19 C -0.200 4.200 20 C -0.101 4.101 21 C -0.119 4.119 22 C -0.157 4.157 23 Cl -0.013 7.013 24 S 0.161 5.839 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.263 0.737 31 H 0.332 0.668 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.413 0.587 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.168 0.832 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.851 21.764 -9.878 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.029 0.971 5 C -0.600 4.600 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.303 5.303 14 C -0.083 4.083 15 C 0.310 3.690 16 O -0.441 6.441 17 N -0.374 5.374 18 C 0.072 3.928 19 C -0.318 4.318 20 C -0.133 4.133 21 C -0.151 4.151 22 C -0.301 4.301 23 Cl 0.016 6.984 24 S 0.424 5.576 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.249 0.751 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.185 0.815 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.252 20.780 -9.777 24.759 hybrid contribution 3.277 0.939 0.363 3.428 sum -5.975 21.719 -9.414 24.414 Atomic orbital electron populations 1.21578 0.96595 0.99907 1.00369 1.21375 0.94304 0.98538 0.99986 1.18967 0.91850 0.91589 0.86086 0.97081 1.22146 0.93861 1.38477 1.05494 0.93074 1.25637 1.02002 0.94650 0.95499 1.69993 1.36422 1.38634 1.09777 0.85682 0.81075 0.77601 0.78002 1.20039 1.21067 1.19746 1.60527 1.55402 1.05700 1.08663 1.21695 1.01062 0.90727 0.94819 1.20854 0.76695 0.81962 0.89504 1.90660 1.51382 1.62482 1.39618 1.45967 1.67725 1.06685 1.17036 1.19574 1.00645 0.84864 0.87730 1.24456 0.98164 0.98853 1.10307 1.20301 1.00952 0.91009 1.01021 1.20456 0.95249 0.98651 1.00704 1.25510 0.99510 0.92354 1.12740 1.98381 1.84263 1.23402 1.92399 1.84670 1.14792 0.94188 1.63907 0.92844 0.93707 0.94613 0.95728 0.91676 0.92816 0.85133 0.88217 0.92007 0.75059 0.89130 0.90917 0.81468 0.81360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.85 71.98 0.71 -4.56 16 2 C -0.10 -5.01 5.45 30.60 0.17 -4.85 16 3 C 0.22 10.92 1.97 44.17 0.09 11.00 16 4 H 0.01 0.59 7.70 -2.39 -0.02 0.58 16 5 C -0.56 -29.50 8.47 25.60 0.22 -29.29 16 6 H 0.05 2.66 7.73 -2.91 -0.02 2.64 16 7 C 0.02 1.20 5.29 84.66 0.45 1.65 16 8 N -0.91 -50.68 11.29 21.45 0.24 -50.44 16 9 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 N -0.67 -28.59 5.17 -499.46 -2.58 -31.17 16 14 C 0.05 1.72 5.99 85.56 0.51 2.23 16 15 C 0.52 16.29 7.88 87.66 0.69 16.98 16 16 O -0.56 -21.85 16.32 -3.03 -0.05 -21.90 16 17 N -0.72 -15.77 5.55 -466.81 -2.59 -18.36 16 18 C 0.20 3.74 6.16 85.63 0.53 4.27 16 19 C -0.20 -3.06 5.88 24.58 0.14 -2.92 16 20 C -0.10 -1.30 10.05 21.22 0.21 -1.09 16 21 C -0.12 -1.50 10.13 21.25 0.22 -1.28 16 22 C -0.16 -2.34 7.10 66.75 0.47 -1.86 16 23 Cl -0.01 -0.19 29.29 -2.72 -0.08 -0.27 16 24 S 0.16 2.50 23.33 -56.49 -1.32 1.18 16 25 H 0.05 2.19 7.64 -2.39 -0.02 2.17 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 3.51 5.95 -2.39 -0.01 3.50 16 30 H 0.26 13.96 8.31 -92.72 -0.77 13.19 16 31 H 0.33 14.68 8.29 -89.69 -0.74 13.93 16 32 H 0.10 3.25 7.92 -2.39 -0.02 3.23 16 33 H 0.06 2.10 8.11 -2.38 -0.02 2.08 16 34 H 0.41 7.24 8.46 -92.71 -0.78 6.46 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -62.03 352.96 -0.38 -62.41 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.43 Total: 24.00 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 4.41 Total: -9.72 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -4.93 Total: -99.97 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.32 Total: 1.18 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.08 Total: -0.27 kcal Total: -62.03 -0.38 -62.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577290340.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.456 kcal (2) G-P(sol) polarization free energy of solvation -62.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds