Wall clock time and date at job start Tue Mar 31 2020 11:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86803 * 120.00315 * 2 1 4 4 H 1.48496 * 109.46986 * 274.96552 * 3 2 1 5 5 H 1.48506 * 109.46479 * 34.96158 * 3 2 1 6 6 H 1.48499 * 109.47388 * 154.95944 * 3 2 1 7 7 C 1.40050 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00638 * 171.89892 * 7 2 1 9 9 C 1.39628 * 119.99887 * 351.90288 * 7 2 1 10 10 C 1.38581 * 125.23028 * 188.29740 * 9 7 2 11 11 C 1.36008 * 114.49798 * 179.69845 * 10 9 7 12 12 C 1.37341 * 114.88528 * 0.51146 * 11 10 9 13 13 C 1.47218 * 125.06991 * 179.77906 * 12 11 10 14 14 C 1.39974 * 120.11073 * 179.71944 * 13 12 11 15 15 C 1.37702 * 119.87992 * 180.02562 * 14 13 12 16 16 C 1.39010 * 120.11553 * 0.02562 * 15 14 13 17 17 O 1.35798 * 119.88308 * 180.02562 * 16 15 14 18 18 C 1.42899 * 117.00253 * 174.67017 * 17 16 15 19 19 H 1.09003 * 111.01684 * 321.00131 * 18 17 16 20 20 C 1.55305 * 111.12646 * 196.78482 * 18 17 16 21 21 C 1.54387 * 102.24991 * 207.94593 * 20 18 17 22 22 O 1.43231 * 107.59236 * 21.35381 * 21 20 18 23 23 C 1.43655 * 109.96950 * 1.71357 * 22 21 20 24 24 C 1.39009 * 120.23093 * 0.26961 * 16 15 14 25 25 C 1.37695 * 120.11958 * 359.45532 * 24 16 15 26 26 S 1.75798 * 109.85532 * 359.51361 * 12 11 10 27 27 H 0.97000 * 119.99626 * 0.02562 * 1 2 3 28 28 H 1.08003 * 122.74770 * 0.02562 * 10 9 7 29 29 H 1.08006 * 122.55744 * 180.28413 * 11 10 9 30 30 H 1.08002 * 120.06322 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.94253 * 179.97438 * 15 14 13 32 32 H 1.08994 * 110.85234 * 89.75958 * 20 18 17 33 33 H 1.09002 * 110.84818 * 326.13204 * 20 18 17 34 34 H 1.09003 * 109.82908 * 261.83566 * 21 20 18 35 35 H 1.09000 * 109.90297 * 140.91366 * 21 20 18 36 36 H 1.08998 * 110.31007 * 94.49051 * 23 22 21 37 37 H 1.08998 * 110.30506 * 216.65480 * 23 22 21 38 38 H 1.08003 * 119.93962 * 179.72249 * 24 16 15 39 39 H 1.07998 * 120.06117 * 180.26866 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3854 2.1069 -1.3948 5 1 1.4966 2.6201 0.8023 6 1 3.5889 1.4121 0.5926 7 6 2.0091 -1.2128 0.0005 8 1 3.0809 -1.2176 -0.1312 9 6 1.3214 -2.4160 0.1714 10 6 1.9128 -3.6561 0.3523 11 6 1.0343 -4.6832 0.5037 12 6 -0.2901 -4.3249 0.4415 13 6 -1.4248 -5.2538 0.5717 14 6 -2.7375 -4.7736 0.4974 15 6 -3.7953 -5.6466 0.6204 16 6 -3.5612 -7.0025 0.8185 17 8 -4.6079 -7.8593 0.9386 18 6 -4.2998 -9.2521 1.0229 19 1 -3.4798 -9.5123 0.3535 20 6 -5.5543 -10.1213 0.7353 21 6 -5.2567 -11.4033 1.5425 22 8 -4.2960 -11.0670 2.5502 23 6 -3.9828 -9.6667 2.4817 24 6 -2.2595 -7.4836 0.8991 25 6 -1.1946 -6.6200 0.7718 26 16 -0.4282 -2.5904 0.1907 27 1 -0.4849 0.8401 -0.0004 28 1 2.9837 -3.7947 0.3767 29 1 1.3537 -5.7035 0.6573 30 1 -2.9204 -3.7203 0.3440 31 1 -4.8085 -5.2772 0.5637 32 1 -5.6369 -10.3433 -0.3286 33 1 -6.4571 -9.6328 1.1020 34 1 -4.8482 -12.1690 0.8829 35 1 -6.1712 -11.7679 2.0103 36 1 -4.6053 -9.1053 3.1784 37 1 -2.9275 -9.5040 2.7005 38 1 -2.0831 -8.5372 1.0575 39 1 -0.1836 -6.9954 0.8302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592983704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:31 Heat of formation + Delta-G solvation = -51.880654 kcal Electronic energy + Delta-G solvation = -22401.382068 eV Core-core repulsion = 18978.725227 eV Total energy + Delta-G solvation = -3422.656841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35622 -38.79676 -37.00671 -35.74542 -34.03970 -31.93291 -30.62315 -30.36337 -29.09097 -28.15567 -24.81084 -23.02136 -22.93112 -22.44495 -21.24250 -20.55715 -18.42347 -18.24901 -17.61468 -16.89311 -16.28486 -15.61542 -15.46173 -15.10911 -14.69362 -14.31904 -14.13808 -13.94269 -13.65131 -13.09216 -13.02526 -12.81603 -12.48005 -12.40154 -12.16538 -11.91398 -11.86312 -11.64309 -11.30526 -11.19039 -11.13784 -10.77338 -10.62000 -10.48986 -10.34540 -9.92304 -9.83448 -9.68218 -8.97772 -8.53567 -8.25735 -7.20389 -6.97214 -6.77276 -4.57879 1.65210 1.88738 2.60045 2.83486 2.89400 3.03221 3.08783 3.48061 3.57640 3.77525 3.91415 4.01281 4.11354 4.50627 4.60679 4.61764 4.80486 4.91203 4.92509 5.24600 5.27845 5.38132 5.39712 5.49306 5.59248 5.66574 5.80807 5.94590 6.00538 6.22134 6.50162 6.54197 6.62447 6.66636 6.79601 6.89750 7.08745 7.22680 7.29723 7.43613 7.62466 7.79542 7.87896 8.00082 8.35330 8.38442 9.62708 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.042573 B = 0.002424 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.535722 B =11546.026762 C =12021.932171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.047 3.953 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.369 4.369 8 H 0.098 0.902 9 C 0.033 3.967 10 C -0.340 4.340 11 C -0.040 4.040 12 C -0.378 4.378 13 C 0.045 3.955 14 C -0.119 4.119 15 C -0.126 4.126 16 C 0.063 3.937 17 O -0.304 6.304 18 C 0.055 3.945 19 H 0.090 0.910 20 C -0.150 4.150 21 C 0.052 3.948 22 O -0.379 6.379 23 C 0.028 3.972 24 C -0.187 4.187 25 C -0.118 4.118 26 S 0.150 5.850 27 H 0.300 0.700 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 -10.452 0.677 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.175 4.175 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.405 4.405 8 H 0.116 0.884 9 C -0.088 4.088 10 C -0.364 4.364 11 C -0.069 4.069 12 C -0.493 4.493 13 C 0.043 3.957 14 C -0.137 4.137 15 C -0.145 4.145 16 C 0.019 3.981 17 O -0.219 6.219 18 C -0.003 4.003 19 H 0.108 0.892 20 C -0.188 4.188 21 C -0.024 4.024 22 O -0.299 6.299 23 C -0.049 4.049 24 C -0.205 4.205 25 C -0.137 4.137 26 S 0.411 5.589 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.454 -9.499 0.694 13.420 hybrid contribution 1.730 -0.333 0.023 1.761 sum -7.725 -9.831 0.718 12.524 Atomic orbital electron populations 1.68909 1.07765 1.31103 1.31642 1.26310 0.95179 1.02948 0.93067 0.85765 0.80267 0.78428 0.79553 1.18914 1.19471 1.17992 1.19290 0.96301 0.89107 1.35764 0.88434 1.22027 0.95493 0.95816 0.95490 1.19713 0.98138 0.92216 1.26299 1.19777 0.91819 0.97383 0.97916 1.23047 0.94271 1.00141 1.31870 1.18168 0.91554 0.91612 0.94392 1.20997 0.91294 0.99122 1.02294 1.20154 0.99349 0.89989 1.04976 1.18801 0.85835 0.89852 1.03571 1.85995 1.32012 1.14869 1.89051 1.23923 0.98373 0.81055 0.96934 0.89248 1.23124 0.98525 0.94998 1.02131 1.23096 0.92929 0.96423 0.89979 1.88437 1.61755 1.24511 1.55179 1.23980 1.02160 0.82085 0.96651 1.20993 0.92007 0.99469 1.08068 1.20893 0.97936 0.92626 1.02268 1.84329 1.04795 0.96039 1.73705 0.88703 0.87893 0.88612 0.85777 0.86164 0.89076 0.89152 0.90841 0.90859 0.90873 0.88867 0.86587 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.76 10.69 55.56 0.59 -17.17 16 2 C 0.05 1.07 5.49 -17.28 -0.09 0.97 16 3 Si 0.94 16.65 29.57 -169.99 -5.03 11.62 16 4 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 5 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 6 H -0.26 -4.52 7.11 56.52 0.40 -4.11 16 7 C -0.37 -8.96 9.26 -38.38 -0.36 -9.32 16 8 H 0.10 2.22 7.86 -52.49 -0.41 1.81 16 9 C 0.03 0.85 6.17 -38.94 -0.24 0.61 16 10 C -0.34 -8.38 10.16 -40.26 -0.41 -8.79 16 11 C -0.04 -0.93 9.65 -40.71 -0.39 -1.32 16 12 C -0.38 -8.91 6.41 -36.26 -0.23 -9.14 16 13 C 0.04 0.94 5.88 -104.95 -0.62 0.32 16 14 C -0.12 -2.31 9.59 -39.13 -0.38 -2.68 16 15 C -0.13 -2.18 9.97 -39.49 -0.39 -2.58 16 16 C 0.06 1.04 6.65 -39.01 -0.26 0.78 16 17 O -0.30 -4.45 9.96 -19.11 -0.19 -4.64 16 18 C 0.05 0.63 2.85 -24.48 -0.07 0.56 16 19 H 0.09 1.01 6.66 -51.93 -0.35 0.66 16 20 C -0.15 -1.33 6.76 -24.78 -0.17 -1.50 16 21 C 0.05 0.45 7.79 37.88 0.30 0.74 16 22 O -0.38 -4.45 11.36 -35.23 -0.40 -4.85 16 23 C 0.03 0.32 7.13 38.18 0.27 0.60 16 24 C -0.19 -3.04 8.70 -39.49 -0.34 -3.38 16 25 C -0.12 -2.19 9.54 -39.13 -0.37 -2.56 16 26 S 0.15 3.67 19.15 -107.50 -2.06 1.61 16 27 H 0.30 6.19 8.30 -40.82 -0.34 5.85 16 28 H 0.10 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.10 2.00 6.90 -52.48 -0.36 1.64 16 30 H 0.12 2.41 7.26 -52.49 -0.38 2.02 16 31 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.06 7.20 -51.93 -0.37 0.69 16 38 H 0.12 1.59 5.26 -52.48 -0.28 1.31 16 39 H 0.12 2.06 6.75 -52.49 -0.35 1.70 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -26.99 337.05 -10.36 -37.35 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.60 Total: 7.68 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: -3.76 Total: -36.68 kcal Atomic # 7 Polarization: -17.76 SS G_CDS: 0.59 Total: -17.17 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.59 Total: -9.49 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.03 Total: 11.62 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -2.06 Total: 1.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.99 -10.36 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592983704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.528 kcal (2) G-P(sol) polarization free energy of solvation -26.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds