Wall clock time and date at job start Tue Mar 31 2020 11:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00091 * 2 1 4 4 H 1.48506 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47364 * 300.00273 * 3 2 1 6 6 H 1.48506 * 109.46950 * 60.00317 * 3 2 1 7 7 C 1.37881 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99771 * 162.48424 * 7 2 1 9 9 C 1.50701 * 119.99693 * 342.48411 * 7 2 1 10 10 C 1.53002 * 115.55067 * 320.09638 * 9 7 2 11 11 N 1.46499 * 109.47189 * 280.71523 * 10 9 7 12 12 C 1.34524 * 124.45936 * 264.39844 * 11 10 9 13 13 O 1.21447 * 125.70859 * 0.02562 * 12 11 10 14 14 C 1.47816 * 108.57755 * 179.88302 * 12 11 10 15 15 C 1.38565 * 134.29545 * 180.10509 * 14 12 11 16 16 C 1.38612 * 119.71528 * 180.31035 * 15 14 12 17 17 C 1.38225 * 120.46365 * 359.95957 * 16 15 14 18 18 N 1.48015 * 119.77147 * 180.02562 * 17 16 15 19 19 O 1.21799 * 119.99786 * 180.02562 * 18 17 16 20 20 O 1.21802 * 120.00056 * 0.02562 * 18 17 16 21 21 C 1.38616 * 120.45677 * 0.04187 * 17 16 15 22 22 C 1.38567 * 119.72097 * 359.97438 * 21 17 16 23 23 C 1.34527 * 124.45726 * 84.69809 * 11 10 9 24 24 O 1.21446 * 125.71141 * 0.02562 * 23 11 10 25 25 C 1.52997 * 117.49773 * 174.42443 * 9 7 2 26 26 C 1.52998 * 60.03438 * 252.50401 * 25 9 7 27 27 H 0.97001 * 119.99306 * 355.05442 * 1 2 3 28 28 H 1.09000 * 109.46691 * 40.71649 * 10 9 7 29 29 H 1.08996 * 109.46598 * 160.71256 * 10 9 7 30 30 H 1.07994 * 120.14480 * 0.27217 * 15 14 12 31 31 H 1.08002 * 119.76700 * 179.97438 * 16 15 14 32 32 H 1.07998 * 120.13400 * 180.02562 * 21 17 16 33 33 H 1.09004 * 117.49795 * 0.02562 * 25 9 7 34 34 H 1.09000 * 117.49914 * 144.99794 * 25 9 7 35 35 H 1.08994 * 117.50317 * 107.50317 * 26 25 9 36 36 H 1.09004 * 117.49617 * 252.52837 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0469 -1.2156 -0.2820 9 6 1.3034 -2.4691 0.3917 10 6 0.3314 -2.3528 1.5676 11 7 1.0834 -2.3547 2.8248 12 6 1.3040 -3.4471 3.5782 13 8 0.9177 -4.5709 3.3275 14 6 2.0983 -3.0514 4.7603 15 6 2.6123 -3.7316 5.8527 16 6 3.3297 -3.0408 6.8168 17 6 3.5362 -1.6795 6.6954 18 7 4.3050 -0.9573 7.7337 19 8 4.4891 0.2424 7.6310 20 8 4.7537 -1.5626 8.6907 21 6 3.0279 -0.9860 5.6081 22 6 2.3085 -1.6632 4.6366 23 6 1.6393 -1.2631 3.3808 24 8 1.5976 -0.1372 2.9274 25 6 2.0830 -3.7775 0.2463 26 6 0.9471 -3.4526 -0.7258 27 1 -0.4849 0.8370 0.0724 28 1 -0.2321 -1.4236 1.4826 29 1 -0.3570 -3.1977 1.5547 30 1 2.4541 -4.7952 5.9528 31 1 3.7303 -3.5701 7.6688 32 1 3.1928 0.0776 5.5182 33 1 3.1032 -3.7160 -0.1327 34 1 1.9035 -4.5555 0.9883 35 1 1.2197 -3.1775 -1.7447 36 1 0.0200 -4.0166 -0.6230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594881200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:24 Heat of formation + Delta-G solvation = 20.495717 kcal Electronic energy + Delta-G solvation = -26298.470581 eV Core-core repulsion = 22332.659000 eV Total energy + Delta-G solvation = -3965.811581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.60904 -42.07230 -38.89155 -38.33179 -36.83885 -36.69980 -35.37706 -32.42428 -32.25754 -31.89051 -28.09527 -26.47101 -25.61374 -24.71054 -23.37275 -22.20355 -21.31798 -20.47611 -19.62379 -18.92580 -18.88686 -17.81423 -17.52520 -17.09968 -16.61386 -15.88494 -15.66488 -15.19306 -14.77294 -14.60255 -14.47281 -13.89247 -13.82112 -13.68761 -13.43928 -13.00037 -12.47066 -11.94305 -11.82222 -11.56767 -11.51956 -11.38217 -11.01814 -10.83749 -10.65592 -10.55431 -10.27425 -10.11193 -10.10483 -10.05496 -9.88027 -9.24846 -8.97764 -8.79394 -8.16052 -6.22464 -4.19092 -0.83260 0.14536 0.69373 0.99263 1.79027 2.58802 3.00456 3.20346 3.32232 3.34025 3.40670 3.42135 3.94099 4.03521 4.20198 4.38479 4.40977 4.52277 4.88953 5.03016 5.15206 5.19639 5.36162 5.40390 5.61930 5.81509 5.91153 6.02322 6.06172 6.24336 6.48985 6.56299 6.78967 6.86358 6.95505 7.22897 7.34068 7.34599 7.44217 7.78692 7.99650 8.24234 8.75393 9.44508 10.85194 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.005046 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.285046 B = 5547.729908 C = 6975.265205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.094 3.906 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.135 3.865 11 N -0.544 5.544 12 C 0.565 3.435 13 O -0.463 6.463 14 C -0.083 4.083 15 C -0.052 4.052 16 C -0.037 4.037 17 C -0.033 4.033 18 N 0.028 4.972 19 O -0.148 6.148 20 O -0.153 6.153 21 C 0.006 3.994 22 C -0.125 4.125 23 C 0.568 3.432 24 O -0.408 6.408 25 C -0.209 4.209 26 C -0.185 4.185 27 H 0.264 0.736 28 H 0.140 0.860 29 H 0.068 0.932 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -6.066 13.128 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.110 4.110 3 Si 0.714 3.286 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.031 3.969 10 C 0.018 3.982 11 N -0.284 5.284 12 C 0.352 3.648 13 O -0.335 6.335 14 C -0.087 4.087 15 C -0.071 4.071 16 C -0.056 4.056 17 C -0.116 4.116 18 N 0.549 4.451 19 O -0.366 6.366 20 O -0.370 6.370 21 C -0.014 4.014 22 C -0.130 4.130 23 C 0.353 3.647 24 O -0.274 6.274 25 C -0.247 4.247 26 C -0.223 4.223 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.086 0.914 30 H 0.182 0.818 31 H 0.186 0.814 32 H 0.187 0.813 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.231 -6.232 12.056 13.753 hybrid contribution 0.755 0.936 0.210 1.221 sum 2.986 -5.296 12.266 13.690 Atomic orbital electron populations 1.69853 1.06219 1.27372 1.47512 1.24719 0.94509 0.98924 0.92832 0.86623 0.80362 0.83982 0.77603 1.19981 1.21513 1.19917 1.20417 0.96121 0.89971 1.46614 0.92255 1.19238 0.95785 0.89315 0.92555 1.21915 0.92724 1.06008 0.77561 1.46674 1.49777 1.08128 1.23790 1.18158 0.79163 0.84904 0.82581 1.90785 1.49334 1.20049 1.73324 1.21388 0.96718 0.94700 0.95905 1.20753 0.94513 1.01526 0.90356 1.21253 0.94003 0.90940 0.99375 1.21132 1.04467 0.93262 0.92714 1.43484 0.99273 1.01242 1.01087 1.94597 1.62220 0.96801 1.82944 1.94544 1.51180 1.69116 1.22117 1.20415 0.90239 1.02404 0.88331 1.20866 1.00414 0.94496 0.97247 1.17824 0.78917 0.85189 0.82808 1.90873 1.52715 1.19650 1.64184 1.22911 0.96292 1.01537 1.03930 1.22954 0.97002 1.05901 0.96457 0.92644 0.84245 0.91406 0.81770 0.81441 0.81282 0.90635 0.90966 0.89933 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.03 11.14 55.43 0.62 -22.41 16 2 C 0.09 2.46 3.86 -17.82 -0.07 2.39 16 3 Si 0.89 21.31 28.90 -169.99 -4.91 16.39 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.50 -12.86 8.71 -34.44 -0.30 -13.16 16 8 H 0.06 1.59 7.87 -52.49 -0.41 1.18 16 9 C 0.03 0.75 1.88 -155.62 -0.29 0.46 16 10 C 0.14 2.91 5.42 -4.04 -0.02 2.89 16 11 N -0.54 -10.28 2.60 -117.62 -0.31 -10.59 16 12 C 0.57 9.29 7.96 -12.46 -0.10 9.19 16 13 O -0.46 -8.24 16.85 5.41 0.09 -8.15 16 14 C -0.08 -1.07 6.40 -104.83 -0.67 -1.74 16 15 C -0.05 -0.46 10.09 -39.32 -0.40 -0.86 16 16 C -0.04 -0.30 9.54 -39.45 -0.38 -0.68 16 17 C -0.03 -0.36 6.86 -79.81 -0.55 -0.90 16 18 N 0.03 0.34 4.45 34.03 0.15 0.49 16 19 O -0.15 -2.00 18.44 -29.46 -0.54 -2.54 16 20 O -0.15 -1.86 18.42 -29.46 -0.54 -2.41 16 21 C 0.01 0.07 9.59 -39.32 -0.38 -0.31 16 22 C -0.13 -1.77 6.40 -104.84 -0.67 -2.44 16 23 C 0.57 10.57 8.02 -12.46 -0.10 10.47 16 24 O -0.41 -8.94 15.49 5.41 0.08 -8.86 16 25 C -0.21 -4.41 9.92 -26.73 -0.27 -4.67 16 26 C -0.18 -4.01 9.89 -26.69 -0.26 -4.27 16 27 H 0.26 6.72 8.32 -40.82 -0.34 6.39 16 28 H 0.14 3.33 5.47 -51.93 -0.28 3.05 16 29 H 0.07 1.37 7.67 -51.93 -0.40 0.97 16 30 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.17 0.93 7.58 -52.49 -0.40 0.53 16 32 H 0.17 1.96 7.61 -52.49 -0.40 1.56 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.07 1.46 7.32 -51.93 -0.38 1.08 16 35 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -28.91 326.42 -7.99 -36.90 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.10 Total: -0.10 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -4.45 Total: -3.64 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.46 Total: -32.51 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.91 Total: -21.95 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.91 Total: 16.39 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.91 -7.99 -36.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594881200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.393 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds