Wall clock time and date at job start Tue Mar 31 2020 11:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00091 * 2 1 4 4 H 1.48506 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47364 * 300.00273 * 3 2 1 6 6 H 1.48506 * 109.46950 * 60.00317 * 3 2 1 7 7 C 1.37881 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99771 * 162.48424 * 7 2 1 9 9 C 1.50701 * 119.99693 * 342.48411 * 7 2 1 10 10 C 1.53002 * 115.55067 * 320.09638 * 9 7 2 11 11 N 1.46499 * 109.47189 * 280.71523 * 10 9 7 12 12 C 1.34524 * 124.45936 * 264.39844 * 11 10 9 13 13 O 1.21447 * 125.70859 * 0.02562 * 12 11 10 14 14 C 1.47816 * 108.57755 * 179.88302 * 12 11 10 15 15 C 1.38565 * 134.29545 * 180.10509 * 14 12 11 16 16 C 1.38612 * 119.71528 * 180.31035 * 15 14 12 17 17 C 1.38225 * 120.46365 * 359.95957 * 16 15 14 18 18 N 1.48015 * 119.77147 * 180.02562 * 17 16 15 19 19 O 1.21799 * 119.99786 * 180.02562 * 18 17 16 20 20 O 1.21802 * 120.00056 * 0.02562 * 18 17 16 21 21 C 1.38616 * 120.45677 * 0.04187 * 17 16 15 22 22 C 1.38567 * 119.72097 * 359.97438 * 21 17 16 23 23 C 1.34527 * 124.45726 * 84.69809 * 11 10 9 24 24 O 1.21446 * 125.71141 * 0.02562 * 23 11 10 25 25 C 1.52997 * 117.49773 * 174.42443 * 9 7 2 26 26 C 1.52998 * 60.03438 * 252.50401 * 25 9 7 27 27 H 0.97001 * 119.99306 * 355.05442 * 1 2 3 28 28 H 1.09000 * 109.46691 * 40.71649 * 10 9 7 29 29 H 1.08996 * 109.46598 * 160.71256 * 10 9 7 30 30 H 1.07994 * 120.14480 * 0.27217 * 15 14 12 31 31 H 1.08002 * 119.76700 * 179.97438 * 16 15 14 32 32 H 1.07998 * 120.13400 * 180.02562 * 21 17 16 33 33 H 1.09004 * 117.49795 * 0.02562 * 25 9 7 34 34 H 1.09000 * 117.49914 * 144.99794 * 25 9 7 35 35 H 1.08994 * 117.50317 * 107.50317 * 26 25 9 36 36 H 1.09004 * 117.49617 * 252.52837 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0469 -1.2156 -0.2820 9 6 1.3034 -2.4691 0.3917 10 6 0.3314 -2.3528 1.5676 11 7 1.0834 -2.3547 2.8248 12 6 1.3040 -3.4471 3.5782 13 8 0.9177 -4.5709 3.3275 14 6 2.0983 -3.0514 4.7603 15 6 2.6123 -3.7316 5.8527 16 6 3.3297 -3.0408 6.8168 17 6 3.5362 -1.6795 6.6954 18 7 4.3050 -0.9573 7.7337 19 8 4.4891 0.2424 7.6310 20 8 4.7537 -1.5626 8.6907 21 6 3.0279 -0.9860 5.6081 22 6 2.3085 -1.6632 4.6366 23 6 1.6393 -1.2631 3.3808 24 8 1.5976 -0.1372 2.9274 25 6 2.0830 -3.7775 0.2463 26 6 0.9471 -3.4526 -0.7258 27 1 -0.4849 0.8370 0.0724 28 1 -0.2321 -1.4236 1.4826 29 1 -0.3570 -3.1977 1.5547 30 1 2.4541 -4.7952 5.9528 31 1 3.7303 -3.5701 7.6688 32 1 3.1928 0.0776 5.5182 33 1 3.1032 -3.7160 -0.1327 34 1 1.9035 -4.5555 0.9883 35 1 1.2197 -3.1775 -1.7447 36 1 0.0200 -4.0166 -0.6230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594881200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:24 Heat of formation + Delta-G solvation = 5.159515 kcal Electronic energy + Delta-G solvation = -26299.135608 eV Core-core repulsion = 22332.659000 eV Total energy + Delta-G solvation = -3966.476608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.68055 -43.19593 -39.97417 -39.73399 -38.39008 -37.78969 -36.78416 -34.24297 -33.52617 -32.82397 -29.38737 -27.82045 -27.37298 -25.97077 -24.43224 -23.32540 -23.02921 -21.73067 -21.01675 -20.28433 -19.86916 -18.75108 -18.67698 -18.63160 -18.01216 -17.43578 -16.82984 -16.64152 -16.32059 -16.03069 -15.52401 -15.48220 -15.14530 -14.93942 -14.76513 -14.29729 -13.78803 -13.41739 -13.38724 -12.92984 -12.79026 -12.72006 -12.48126 -12.39223 -12.35740 -12.21696 -11.97600 -11.73972 -11.51419 -11.08998 -11.08122 -10.77950 -10.74230 -10.46008 -10.07883 -8.23279 -6.21979 -1.80507 -0.86394 -0.22815 0.07345 0.69876 1.24812 1.34171 1.43211 1.44427 1.86851 2.04061 2.26847 2.40488 2.91100 3.00323 3.08832 3.25415 3.43150 3.55743 3.71032 4.10901 4.18414 4.22745 4.29594 4.33420 4.40956 4.49478 4.58154 4.77083 4.84534 4.85542 5.06315 5.13961 5.16903 5.31158 5.49212 5.67622 5.84065 6.11051 6.30364 6.35859 6.59396 6.72846 7.42128 8.83402 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.005046 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.285046 B = 5547.729908 C = 6975.265205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.506 4.506 8 H 0.042 0.958 9 C 0.007 3.993 10 C 0.145 3.855 11 N -0.558 5.558 12 C 0.568 3.432 13 O -0.477 6.477 14 C -0.085 4.085 15 C -0.022 4.022 16 C -0.002 4.002 17 C -0.034 4.034 18 N 0.028 4.972 19 O -0.197 6.197 20 O -0.120 6.120 21 C 0.007 3.993 22 C -0.140 4.140 23 C 0.562 3.438 24 O -0.459 6.459 25 C -0.188 4.188 26 C -0.182 4.182 27 H 0.262 0.738 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.207 0.793 31 H 0.212 0.788 32 H 0.164 0.836 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -8.742 15.733 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.749 3.251 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.006 3.994 10 C 0.026 3.974 11 N -0.297 5.297 12 C 0.357 3.643 13 O -0.350 6.350 14 C -0.088 4.088 15 C -0.041 4.041 16 C -0.021 4.021 17 C -0.117 4.117 18 N 0.548 4.452 19 O -0.403 6.403 20 O -0.347 6.347 21 C -0.012 4.012 22 C -0.145 4.145 23 C 0.349 3.651 24 O -0.329 6.329 25 C -0.225 4.225 26 C -0.220 4.220 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.224 0.776 31 H 0.229 0.771 32 H 0.181 0.819 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.257 -8.827 14.622 17.387 hybrid contribution 0.486 1.607 -0.462 1.741 sum 3.742 -7.220 14.160 16.329 Atomic orbital electron populations 1.69913 1.06688 1.27515 1.48325 1.25051 0.94920 1.00366 0.92917 0.86092 0.79508 0.82294 0.77249 1.20238 1.20937 1.20674 1.20512 0.95439 0.91614 1.46705 0.94019 1.19288 0.97176 0.89035 0.93927 1.21481 0.92611 1.04805 0.78501 1.46676 1.50057 1.09497 1.23491 1.18512 0.78804 0.83928 0.83101 1.90771 1.49969 1.20283 1.73941 1.21141 0.97631 0.93883 0.96178 1.21225 0.91874 1.03132 0.87883 1.21784 0.91296 0.89384 0.99614 1.21195 1.04421 0.94131 0.91919 1.43627 0.99180 1.01153 1.01222 1.94635 1.64337 0.97502 1.83823 1.94514 1.49691 1.68762 1.21780 1.20318 0.90012 1.02411 0.88504 1.20303 1.02496 0.95361 0.96301 1.18481 0.78228 0.84427 0.83946 1.90826 1.54812 1.21309 1.65979 1.22834 0.95943 1.00275 1.03438 1.22945 0.98036 1.05319 0.95749 0.92794 0.87026 0.90538 0.77576 0.77110 0.81878 0.90728 0.89747 0.90776 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.34 11.14 21.45 0.24 -48.10 16 2 C 0.07 3.76 3.86 84.66 0.33 4.08 16 3 Si 0.92 45.01 28.90 68.60 1.98 46.99 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 6 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.51 -27.06 8.71 25.60 0.22 -26.84 16 8 H 0.04 2.31 7.87 -2.91 -0.02 2.29 16 9 C 0.01 0.32 1.88 -52.90 -0.10 0.22 16 10 C 0.15 6.37 5.42 86.38 0.47 6.84 16 11 N -0.56 -21.30 2.60 -762.96 -1.98 -23.28 16 12 C 0.57 17.84 7.96 86.82 0.69 18.53 16 13 O -0.48 -15.96 16.85 -3.55 -0.06 -16.02 16 14 C -0.08 -1.93 6.40 -20.00 -0.13 -2.06 16 15 C -0.02 -0.27 10.09 22.44 0.23 -0.04 16 16 C 0.00 -0.02 9.54 22.36 0.21 0.19 16 17 C -0.03 -0.62 6.86 36.46 0.25 -0.37 16 18 N 0.03 0.61 4.45 -46.26 -0.21 0.41 16 19 O -0.20 -5.21 18.44 18.89 0.35 -4.86 16 20 O -0.12 -2.42 18.42 18.88 0.35 -2.08 16 21 C 0.01 0.17 9.59 22.44 0.22 0.39 16 22 C -0.14 -3.85 6.40 -20.00 -0.13 -3.98 16 23 C 0.56 21.54 8.02 86.82 0.70 22.24 16 24 O -0.46 -21.27 15.49 -3.55 -0.05 -21.33 16 25 C -0.19 -7.76 9.92 30.59 0.30 -7.46 16 26 C -0.18 -7.84 9.89 30.62 0.30 -7.54 16 27 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 28 H 0.11 5.57 5.47 -2.39 -0.01 5.56 16 29 H 0.08 3.12 7.67 -2.39 -0.02 3.10 16 30 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 31 H 0.21 0.60 7.58 -2.91 -0.02 0.58 16 32 H 0.16 3.91 7.61 -2.91 -0.02 3.89 16 33 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 34 H 0.08 3.28 7.32 -2.39 -0.02 3.26 16 35 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.08 3.30 8.09 -2.39 -0.02 3.28 16 Total: -1.00 -65.89 326.42 5.33 -60.56 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.15 Total: 3.52 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 3.56 Total: 4.19 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.95 Total: -70.98 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: 0.58 Total: -44.28 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.98 Total: 46.99 kcal Total: -65.89 5.33 -60.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594881200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.722 kcal (2) G-P(sol) polarization free energy of solvation -65.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds