Wall clock time and date at job start Tue Mar 31 2020 11:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.50692 * 109.46931 * 179.97438 * 13 12 2 15 15 O 1.21285 * 120.00633 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99985 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99822 * 0.02562 * 16 14 13 18 18 C 1.46501 * 120.00154 * 179.97438 * 16 14 13 19 19 C 1.50701 * 109.47008 * 90.00240 * 18 16 14 20 20 C 1.33354 * 125.19184 * 90.00129 * 19 18 16 21 21 C 1.38469 * 114.93193 * 179.97438 * 20 19 18 22 22 C 1.33505 * 114.88303 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 125.20572 * 179.97438 * 22 21 20 24 24 S 1.75876 * 125.18979 * 269.69319 * 19 18 16 25 25 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 26 26 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 27 27 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 28 28 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 29 29 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 30 30 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 31 31 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 32 32 H 1.08998 * 109.47032 * 89.99578 * 17 16 14 33 33 H 1.09004 * 109.46988 * 209.99973 * 17 16 14 34 34 H 1.08994 * 109.46916 * 329.99471 * 17 16 14 35 35 H 1.09000 * 109.47242 * 209.99930 * 18 16 14 36 36 H 1.09000 * 109.46918 * 330.00096 * 18 16 14 37 37 H 1.08005 * 122.52879 * 359.97426 * 20 19 18 38 38 H 1.07999 * 122.55618 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5884 -0.5214 -3.5557 15 8 2.8687 -1.6983 -3.4700 16 7 2.7286 0.1207 -4.7324 17 6 2.3895 1.5422 -4.8361 18 6 3.2210 -0.6025 -5.9074 19 6 2.0559 -1.1951 -6.6573 20 6 1.3811 -0.5872 -7.6337 21 6 0.3462 -1.3292 -8.1776 22 6 0.1818 -2.5410 -7.6419 23 17 -1.0294 -3.6898 -8.1181 24 16 1.3835 -2.7970 -6.3834 25 1 -0.3633 0.4033 0.9453 26 1 -0.3634 0.6170 -0.8219 27 1 -0.3633 -1.0202 -0.1234 28 1 1.9017 -1.9132 3.4364 29 1 1.4495 -1.4978 -1.4101 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0462 -2.1183 32 1 3.2705 2.1432 -4.6112 33 1 2.0486 1.7615 -5.8480 34 1 1.5970 1.7793 -4.1264 35 1 3.7597 0.0860 -6.5584 36 1 3.8915 -1.4005 -5.5882 37 1 1.6235 0.4086 -7.9744 38 1 -0.2801 -0.9561 -8.9744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602866244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:05 Heat of formation + Delta-G solvation = -19.819689 kcal Electronic energy + Delta-G solvation = -21478.024213 eV Core-core repulsion = 18086.617541 eV Total energy + Delta-G solvation = -3391.406672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99394 -39.06606 -37.85254 -37.55752 -36.44795 -34.59763 -32.35019 -31.10161 -28.15764 -27.59794 -26.77557 -25.66681 -24.04244 -21.86303 -20.79941 -20.21915 -19.49830 -18.68312 -17.91879 -17.25520 -17.01240 -16.58577 -16.05601 -15.59906 -15.35614 -14.98568 -14.61129 -14.57952 -14.14330 -14.12805 -13.95038 -13.74903 -13.67226 -13.51844 -13.14711 -13.01699 -12.87841 -12.71928 -12.52318 -12.33607 -12.03752 -11.86784 -11.63250 -11.61489 -11.16613 -10.86418 -10.34710 -9.81027 -9.63771 -9.57369 -9.12516 -8.68020 -6.27792 -0.26515 0.10474 0.89042 1.20150 1.48675 1.52194 1.57612 1.63462 1.76369 2.12563 2.55276 3.05264 3.48905 3.66488 3.74528 4.15583 4.26775 4.30995 4.35342 4.43092 4.47428 4.55109 4.64302 4.68187 4.75382 4.82056 4.92720 5.01608 5.03252 5.05341 5.36207 5.44121 5.50809 5.84649 6.10146 6.24741 6.41341 6.61661 6.76841 7.19855 7.48605 8.64575 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.002940 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.109866 B = 9520.400961 C =10119.299518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.196 3.804 3 H 0.041 0.959 4 C -0.599 4.599 5 H 0.011 0.989 6 C -0.020 4.020 7 N -0.936 5.936 8 Si 1.083 2.917 9 H -0.291 1.291 10 H -0.262 1.262 11 H -0.241 1.241 12 N -0.683 5.683 13 C 0.043 3.957 14 C 0.509 3.491 15 O -0.563 6.563 16 N -0.611 5.611 17 C 0.068 3.932 18 C 0.184 3.816 19 C -0.192 4.192 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.168 4.168 23 Cl -0.021 7.021 24 S 0.112 5.888 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.250 0.750 29 H 0.331 0.669 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.071 0.929 37 H 0.186 0.814 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 8.566 -30.221 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.087 3.913 3 H 0.059 0.941 4 C -0.637 4.637 5 H 0.029 0.971 6 C -0.218 4.218 7 N -0.571 5.571 8 Si 0.903 3.097 9 H -0.217 1.217 10 H -0.187 1.187 11 H -0.165 1.165 12 N -0.314 5.314 13 C -0.089 4.089 14 C 0.298 3.702 15 O -0.441 6.441 16 N -0.345 5.345 17 C -0.073 4.073 18 C 0.060 3.940 19 C -0.311 4.311 20 C -0.137 4.137 21 C -0.148 4.148 22 C -0.312 4.312 23 Cl 0.007 6.993 24 S 0.375 5.625 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.149 0.851 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.160 0.840 36 H 0.090 0.910 37 H 0.203 0.797 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.229 7.894 -27.957 29.136 hybrid contribution -1.030 -1.314 -1.694 2.378 sum -3.258 6.580 -29.651 30.547 Atomic orbital electron populations 1.22694 0.99212 1.00166 1.00958 1.19332 0.90213 0.94176 0.87595 0.94112 1.22135 1.39083 1.09477 0.93049 0.97088 1.27291 0.92923 1.09954 0.91641 1.70977 1.47521 1.05492 1.33138 0.83597 0.79159 0.70417 0.76497 1.21731 1.18657 1.16476 1.60282 1.59065 1.09041 1.02974 1.21968 1.01628 0.96248 0.89031 1.21016 0.77143 0.87142 0.84914 1.90682 1.50566 1.17877 1.84984 1.48002 1.66119 1.12365 1.07970 1.22162 1.02100 0.77977 1.05081 1.19965 0.90826 0.97291 0.85896 1.25162 1.05321 0.96951 1.03703 1.20314 0.94803 1.02535 0.96090 1.20549 1.00107 0.91825 1.02305 1.25564 1.01625 0.97919 1.06051 1.98362 1.52249 1.58179 1.90467 1.85432 1.25949 1.17055 1.34037 0.93299 0.92148 0.94676 0.94099 0.85106 0.90798 0.87249 0.90538 0.88055 0.90576 0.83980 0.91044 0.79675 0.81129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.02 8.90 71.98 0.64 -6.38 16 2 C 0.20 9.07 2.17 44.17 0.10 9.17 16 3 H 0.04 1.78 6.37 -2.38 -0.02 1.77 16 4 C -0.60 -35.31 9.05 25.60 0.23 -35.08 16 5 H 0.01 0.73 8.06 -2.91 -0.02 0.71 16 6 C -0.02 -1.18 5.19 84.66 0.44 -0.74 16 7 N -0.94 -59.99 13.70 21.45 0.29 -59.70 16 8 Si 1.08 48.60 26.44 68.60 1.81 50.41 16 9 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.24 -9.28 6.15 99.48 0.61 -8.67 16 12 N -0.68 -29.35 5.86 -499.47 -2.92 -32.28 16 13 C 0.04 1.33 4.52 85.55 0.39 1.72 16 14 C 0.51 15.35 7.71 87.65 0.68 16.03 16 15 O -0.56 -22.20 15.78 -3.05 -0.05 -22.25 16 16 N -0.61 -11.89 2.86 -851.13 -2.43 -14.33 16 17 C 0.07 0.70 10.24 127.77 1.31 2.00 16 18 C 0.18 3.10 5.90 85.63 0.50 3.61 16 19 C -0.19 -3.43 6.09 24.58 0.15 -3.28 16 20 C -0.11 -1.31 10.05 21.22 0.21 -1.10 16 21 C -0.12 -1.69 10.13 21.25 0.22 -1.47 16 22 C -0.17 -3.36 7.10 66.75 0.47 -2.88 16 23 Cl -0.02 -0.41 29.29 -2.72 -0.08 -0.49 16 24 S 0.11 2.71 23.33 -56.49 -1.32 1.39 16 25 H 0.05 2.09 5.48 -2.39 -0.01 2.07 16 26 H 0.06 1.97 7.64 -2.38 -0.02 1.95 16 27 H 0.03 1.48 8.00 -2.39 -0.02 1.46 16 28 H 0.25 16.49 8.73 -92.71 -0.81 15.68 16 29 H 0.33 14.86 8.09 -89.69 -0.73 14.14 16 30 H 0.07 1.89 6.83 -2.39 -0.02 1.88 16 31 H 0.11 3.02 8.02 -2.39 -0.02 3.00 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.44 8.07 -2.38 -0.02 0.42 16 34 H 0.08 0.81 6.44 -2.39 -0.02 0.79 16 35 H 0.14 1.14 8.07 -2.39 -0.02 1.12 16 36 H 0.07 1.61 7.42 -2.39 -0.02 1.59 16 37 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 38 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -78.30 346.13 0.87 -77.43 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.23 Total: 18.23 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 5.34 Total: -18.42 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -5.06 Total: -106.30 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.25 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.81 Total: 50.41 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.32 Total: 1.39 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -78.30 0.87 -77.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.606 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds