Wall clock time and date at job start Tue Mar 31 2020 11:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00288 * 2 1 4 4 H 1.48504 * 109.46802 * 270.00329 * 3 2 1 5 5 H 1.48499 * 109.46716 * 29.99558 * 3 2 1 6 6 H 1.48490 * 109.47437 * 150.00149 * 3 2 1 7 7 C 1.37883 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99819 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99755 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46675 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99837 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.46498 * 109.47036 * 180.02562 * 13 11 10 15 15 C 1.40003 * 120.00316 * 180.02562 * 14 13 11 16 16 C 1.38866 * 119.99725 * 180.02562 * 15 14 13 17 17 C 1.38072 * 120.00576 * 180.02562 * 16 15 14 18 18 C 1.38915 * 119.99357 * 359.97438 * 17 16 15 19 19 S 1.76207 * 120.00497 * 180.02562 * 18 17 16 20 20 C 1.81399 * 102.99967 * 179.97438 * 19 18 17 21 21 F 1.39905 * 109.47243 * 300.00158 * 20 19 18 22 22 F 1.39898 * 109.47339 * 59.99959 * 20 19 18 23 23 C 1.38922 * 119.99051 * 0.27300 * 18 17 16 24 24 C 1.38071 * 119.99151 * 359.49248 * 23 18 17 25 25 H 0.97006 * 119.99696 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47045 * 60.00798 * 9 7 2 27 27 H 1.08997 * 109.47648 * 300.00307 * 9 7 2 28 28 H 0.96999 * 119.99868 * 0.02562 * 10 9 7 29 29 H 1.08994 * 109.46945 * 60.00358 * 13 11 10 30 30 H 1.08997 * 109.47117 * 300.00254 * 13 11 10 31 31 H 0.97003 * 119.99939 * 359.97438 * 14 13 11 32 32 H 1.08003 * 120.00145 * 359.97438 * 16 15 14 33 33 H 1.08006 * 120.00354 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47190 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.00005 * 179.70740 * 23 18 17 36 36 H 1.07999 * 119.99937 * 180.23163 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 5.3249 -2.8216 0.0001 12 8 6.1130 -1.8998 0.0006 13 6 5.8272 -4.2424 0.0008 14 7 7.2922 -4.2424 0.0014 15 6 7.9922 -5.4549 0.0016 16 6 9.3809 -5.4548 0.0026 17 6 10.0715 -6.6504 0.0022 18 6 9.3770 -7.8534 0.0013 19 16 10.2580 -9.3795 0.0015 20 6 8.9313 -10.6166 0.0009 21 9 8.1400 -10.4524 1.1430 22 9 8.1409 -10.4522 -1.1416 23 6 7.9878 -7.8533 -0.0049 24 6 7.2977 -6.6575 0.0004 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6797 0.8895 27 1 3.8746 -0.6807 -0.8904 28 1 3.3695 -3.3125 0.0001 29 1 5.4639 -4.7566 -0.8889 30 1 5.4639 -4.7558 0.8911 31 1 7.7772 -3.4024 0.0009 32 1 9.9209 -4.5194 0.0029 33 1 11.1515 -6.6502 0.0026 34 1 9.3665 -11.6160 0.0006 35 1 7.4477 -8.7886 -0.0104 36 1 6.2177 -6.6573 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690202537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:53 Heat of formation + Delta-G solvation = -120.378459 kcal Electronic energy + Delta-G solvation = -22463.234522 eV Core-core repulsion = 18515.670614 eV Total energy + Delta-G solvation = -3947.563908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.30349 -48.30771 -40.98587 -40.08940 -36.58870 -36.01662 -34.46699 -32.15490 -31.38205 -29.99423 -28.02398 -27.44483 -24.33869 -23.75628 -22.76752 -21.58070 -19.84904 -19.32037 -18.95060 -18.48697 -18.34975 -17.92453 -17.39143 -16.97920 -16.80675 -16.49607 -15.77499 -15.37796 -15.25081 -15.09457 -15.00197 -14.67184 -14.64397 -14.51871 -14.35558 -14.22097 -14.03919 -13.76393 -13.56698 -13.09923 -12.72641 -12.28134 -12.04663 -11.95734 -11.74030 -11.68194 -11.39454 -11.03180 -10.93957 -10.04150 -10.02253 -9.67900 -8.41533 -8.10148 -6.48909 -0.15603 0.33765 0.38750 0.88987 1.31665 1.34481 1.45746 1.55384 1.98858 2.26363 2.65266 2.73591 2.82515 2.93952 3.39808 3.45714 3.72465 3.79354 3.92232 4.27119 4.33580 4.34414 4.42976 4.58730 4.74214 4.92581 4.99463 5.10174 5.22961 5.24294 5.29774 5.41346 5.67220 6.03369 6.20328 6.51720 6.61840 6.76130 7.10999 7.27843 8.73019 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.002139 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.022349 B =13086.945303 C =13824.871232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.231 3.769 10 N -0.698 5.698 11 C 0.498 3.502 12 O -0.591 6.591 13 C 0.114 3.886 14 N -0.735 5.735 15 C 0.220 3.780 16 C -0.185 4.185 17 C -0.042 4.042 18 C -0.174 4.174 19 S -0.108 6.108 20 C 0.271 3.729 21 F -0.192 7.192 22 F -0.192 7.192 23 C -0.078 4.078 24 C -0.190 4.190 25 H 0.272 0.728 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.413 0.587 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.408 0.592 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.200 0.800 35 H 0.127 0.873 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.408 -22.873 -0.011 31.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.108 3.892 10 N -0.348 5.348 11 C 0.284 3.716 12 O -0.472 6.472 13 C -0.014 4.014 14 N -0.367 5.367 15 C 0.115 3.885 16 C -0.209 4.209 17 C -0.065 4.065 18 C -0.287 4.287 19 S 0.127 5.873 20 C 0.109 3.891 21 F -0.174 7.174 22 F -0.174 7.174 23 C -0.102 4.102 24 C -0.214 4.214 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.249 0.751 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.246 0.754 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.217 0.783 35 H 0.145 0.855 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 22.656 -22.406 -0.009 31.864 hybrid contribution -1.834 1.365 -0.016 2.286 sum 20.822 -21.041 -0.025 29.602 Atomic orbital electron populations 1.69980 1.07713 1.28628 1.50585 1.25611 0.95541 1.02715 0.93632 0.85856 0.79256 0.79350 0.79405 1.19046 1.19983 1.18360 1.21290 0.89932 0.94640 1.52682 0.92052 1.19130 0.93399 0.80814 0.95895 1.45935 1.06499 1.10082 1.72303 1.21102 0.82528 0.92110 0.75815 1.90633 1.56134 1.47723 1.52733 1.21121 0.82243 0.92310 1.05686 1.44555 1.04338 1.06200 1.81566 1.18029 0.91580 0.85803 0.93122 1.20739 0.91820 0.99084 1.09295 1.20649 1.00204 0.89462 0.96188 1.21283 0.96062 0.96541 1.14844 1.85991 1.11146 0.96414 1.93778 1.24760 0.86949 1.04887 0.72511 1.93099 1.76830 1.96686 1.50779 1.93095 1.76876 1.96678 1.50742 1.21197 0.92392 0.98816 0.97750 1.20752 1.00687 0.90361 1.09622 0.91845 0.96715 0.96831 0.75091 0.86862 0.86883 0.75413 0.84119 0.83671 0.78334 0.85505 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 13.96 21.45 0.30 -54.42 16 2 C 0.03 1.41 5.47 84.66 0.46 1.87 16 3 Si 0.94 43.13 27.47 68.60 1.88 45.02 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 7 C -0.55 -29.28 9.83 25.60 0.25 -29.03 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.41 16 9 C 0.23 10.83 4.50 85.63 0.38 11.21 16 10 N -0.70 -25.57 5.55 -466.79 -2.59 -28.16 16 11 C 0.50 16.62 7.90 87.66 0.69 17.31 16 12 O -0.59 -24.25 15.67 -3.03 -0.05 -24.30 16 13 C 0.11 2.59 5.39 85.64 0.46 3.05 16 14 N -0.74 -17.40 5.72 -342.92 -1.96 -19.36 16 15 C 0.22 4.86 6.66 38.14 0.25 5.11 16 16 C -0.19 -3.71 9.89 22.38 0.22 -3.49 16 17 C -0.04 -0.79 9.78 22.39 0.22 -0.57 16 18 C -0.17 -3.45 6.10 22.60 0.14 -3.31 16 19 S -0.11 -1.62 22.16 -56.49 -1.25 -2.87 16 20 C 0.27 3.07 5.37 113.37 0.61 3.68 16 21 F -0.19 -2.99 15.66 44.97 0.70 -2.28 16 22 F -0.19 -2.98 15.62 44.97 0.70 -2.28 16 23 C -0.08 -1.63 8.68 22.39 0.19 -1.44 16 24 C -0.19 -3.98 9.31 22.38 0.21 -3.77 16 25 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 26 H 0.01 0.74 7.20 -2.39 -0.02 0.72 16 27 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 28 H 0.41 12.86 8.32 -92.71 -0.77 12.09 16 29 H 0.11 2.09 7.95 -2.39 -0.02 2.08 16 30 H 0.11 2.10 7.95 -2.39 -0.02 2.08 16 31 H 0.41 10.59 7.45 -92.71 -0.69 9.90 16 32 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.20 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.13 2.51 4.53 -2.91 -0.01 2.50 16 36 H 0.14 2.47 6.73 -2.91 -0.02 2.45 16 Total: -1.00 -68.37 329.55 1.48 -66.90 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.36 Total: 21.12 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 4.10 Total: 0.64 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -4.25 Total: -101.94 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 1.41 Total: -4.56 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.02 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -1.25 Total: -2.87 kcal Total: -68.37 1.48 -66.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690202537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.483 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds