Wall clock time and date at job start Tue Mar 31 2020 11:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 120.00050 * 2 1 4 4 H 1.48501 * 109.46941 * 269.99891 * 3 2 1 5 5 H 1.48497 * 109.47167 * 29.99855 * 3 2 1 6 6 H 1.48502 * 109.47118 * 149.99992 * 3 2 1 7 7 C 1.38662 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00205 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.35752 * 117.00147 * 185.04986 * 9 7 2 11 11 C 1.38885 * 120.06631 * 354.47258 * 10 9 7 12 12 C 1.38092 * 119.93039 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.06894 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.93234 * 179.97438 * 13 12 11 15 15 N 1.46495 * 109.47593 * 89.99903 * 14 13 12 16 16 C 1.35759 * 119.62520 * 90.00103 * 15 14 13 17 17 C 1.35353 * 120.70504 * 180.02562 * 16 15 14 18 18 C 1.40194 * 119.94574 * 359.97271 * 17 16 15 19 19 C 1.36402 * 119.26340 * 0.25724 * 18 17 16 20 20 N 1.48011 * 120.34436 * 179.74926 * 19 18 17 21 21 O 1.21795 * 119.99902 * 0.02562 * 20 19 18 22 22 O 1.21798 * 119.99740 * 179.97438 * 20 19 18 23 23 C 1.34658 * 119.62767 * 270.02464 * 15 14 13 24 24 O 1.22071 * 119.98032 * 0.02562 * 23 15 14 25 25 C 1.38306 * 120.14226 * 0.25567 * 13 12 11 26 26 C 1.38107 * 120.06325 * 359.44782 * 25 13 12 27 27 H 0.96999 * 120.00268 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.02894 * 359.97438 * 11 10 9 29 29 H 1.07996 * 119.96727 * 179.97438 * 12 11 10 30 30 H 1.08998 * 109.47085 * 329.99624 * 14 13 12 31 31 H 1.09003 * 109.47419 * 210.00668 * 14 13 12 32 32 H 1.08002 * 119.65063 * 359.97438 * 16 15 14 33 33 H 1.08001 * 120.02809 * 180.02562 * 17 16 15 34 34 H 1.07994 * 120.36812 * 179.97438 * 18 17 16 35 35 H 1.07991 * 119.97156 * 179.70609 * 25 13 12 36 36 H 1.07995 * 120.03338 * 180.27829 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1075 11 6 3.4572 -3.4395 0.0951 12 6 4.2023 -4.5971 0.2036 13 6 3.5685 -5.8204 0.3240 14 6 4.3847 -7.0818 0.4417 15 7 4.6553 -7.3584 1.8546 16 6 3.7873 -8.1210 2.5673 17 6 4.0156 -8.3899 3.8741 18 6 5.1590 -7.8791 4.5043 19 6 6.0276 -7.1092 3.7877 20 7 7.2393 -6.5531 4.4305 21 8 7.4653 -6.7826 5.6051 22 8 8.0108 -5.8669 3.7846 23 6 5.7621 -6.8531 2.4317 24 8 6.5326 -6.1684 1.7779 25 6 2.1872 -5.8892 0.3309 26 6 1.4364 -4.7345 0.2289 27 1 -0.4850 0.8400 -0.0004 28 1 3.9526 -2.4846 -0.0001 29 1 5.2811 -4.5472 0.1936 30 1 5.3273 -6.9556 -0.0909 31 1 3.8311 -7.9146 0.0079 32 1 2.9047 -8.5166 2.0868 33 1 3.3179 -8.9981 4.4306 34 1 5.3477 -8.0890 5.5467 35 1 1.6952 -6.8464 0.4203 36 1 0.3579 -4.7884 0.2388 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731158635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:21 Heat of formation + Delta-G solvation = 3.221913 kcal Electronic energy + Delta-G solvation = -25281.652443 eV Core-core repulsion = 21315.091814 eV Total energy + Delta-G solvation = -3966.560629 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.39068 -41.33815 -39.20879 -37.54547 -37.03318 -36.19997 -35.05891 -32.50306 -31.18279 -30.41607 -30.25064 -26.91373 -26.61586 -25.32577 -23.35334 -23.26990 -22.12874 -20.88445 -19.44381 -18.84791 -18.20178 -17.58392 -17.50172 -17.39075 -17.11202 -16.34701 -16.10142 -15.06064 -14.85837 -14.67207 -14.47849 -13.84162 -13.67848 -13.46792 -13.19641 -12.95448 -12.84839 -12.50534 -12.21308 -11.74201 -11.55809 -11.46813 -11.39637 -11.17043 -11.00583 -10.93267 -10.83647 -10.60695 -10.52874 -10.30019 -9.51486 -8.99713 -8.70179 -8.41582 -7.48050 -6.61646 -4.20052 -0.42685 1.15985 1.27656 1.29051 1.82958 2.02115 2.48911 3.02759 3.05827 3.07798 3.12569 3.85348 3.87873 3.97813 4.26644 4.33614 4.38717 4.67503 4.90610 4.95447 5.01356 5.07062 5.21196 5.29255 5.38673 5.53207 5.60573 5.84414 6.00590 6.18076 6.35268 6.44197 6.49182 6.68557 6.83429 6.97465 7.17278 7.25240 7.49582 7.58233 7.83176 7.83572 8.83724 9.48569 10.55265 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.003377 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.158084 B = 8288.833563 C = 9260.217532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.395 4.395 8 H 0.095 0.905 9 O -0.168 6.168 10 C 0.164 3.836 11 C -0.237 4.237 12 C -0.037 4.037 13 C -0.235 4.235 14 C 0.146 3.854 15 N -0.477 5.477 16 C 0.211 3.789 17 C -0.261 4.261 18 C 0.085 3.915 19 C -0.195 4.195 20 N 0.053 4.947 21 O -0.197 6.197 22 O -0.130 6.130 23 C 0.534 3.466 24 O -0.487 6.487 25 C -0.056 4.056 26 C -0.197 4.197 27 H 0.273 0.727 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.111 0.889 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.849 -19.079 4.703 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.070 6.070 10 C 0.108 3.892 11 C -0.257 4.257 12 C -0.056 4.056 13 C -0.237 4.237 14 C 0.028 3.972 15 N -0.184 5.184 16 C 0.077 3.923 17 C -0.284 4.284 18 C 0.061 3.939 19 C -0.285 4.285 20 N 0.569 4.431 21 O -0.400 6.400 22 O -0.353 6.353 23 C 0.330 3.670 24 O -0.363 6.363 25 C -0.075 4.075 26 C -0.216 4.216 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.198 0.802 33 H 0.185 0.815 34 H 0.179 0.821 35 H 0.129 0.871 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.376 -18.623 3.918 19.328 hybrid contribution 0.574 0.963 0.303 1.162 sum 3.951 -17.660 4.221 18.583 Atomic orbital electron populations 1.70028 1.06063 1.28106 1.44809 1.25345 0.95890 0.99036 0.96040 0.85678 0.79083 0.79636 0.78954 1.19631 1.20042 1.18941 1.21424 0.92023 0.80593 1.53005 0.88737 1.83964 1.34671 1.11672 1.76689 1.19466 0.90321 0.88090 0.91319 1.21207 0.93721 0.99150 1.11575 1.20803 0.99176 0.91457 0.94131 1.19121 0.93368 0.93439 1.17785 1.20947 1.02064 0.97329 0.76844 1.46248 1.18927 1.39319 1.13901 1.22636 0.92049 0.85051 0.92604 1.20659 1.01451 1.11769 0.94557 1.21581 0.88289 0.83155 1.00885 1.21643 0.95297 1.15630 0.95961 1.42819 1.01013 0.98931 1.00329 1.94491 1.80295 1.65394 0.99837 1.94638 1.42456 1.34089 1.64103 1.15914 0.82068 0.82284 0.86688 1.91122 1.45248 1.36215 1.63740 1.20421 0.92368 0.96803 0.97903 1.20159 0.99626 0.90194 1.11635 0.91722 0.85245 0.86512 0.87467 0.88113 0.80247 0.81505 0.82115 0.87085 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.34 13.67 55.48 0.76 -23.58 16 2 C 0.04 1.14 5.49 -17.51 -0.10 1.04 16 3 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.39 -10.77 9.49 30.89 0.29 -10.47 16 8 H 0.10 2.41 5.20 -52.49 -0.27 2.14 16 9 O -0.17 -4.61 9.76 0.04 0.00 -4.61 16 10 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.24 -5.06 9.17 -39.40 -0.36 -5.42 16 12 C -0.04 -0.67 9.69 -39.61 -0.38 -1.05 16 13 C -0.24 -3.46 5.46 -104.57 -0.57 -4.03 16 14 C 0.15 1.53 5.46 -5.20 -0.03 1.50 16 15 N -0.48 -5.00 2.57 -121.07 -0.31 -5.32 16 16 C 0.21 1.29 10.28 -16.84 -0.17 1.12 16 17 C -0.26 -1.44 10.01 -39.88 -0.40 -1.83 16 18 C 0.08 0.73 9.60 -39.51 -0.38 0.36 16 19 C -0.20 -2.66 6.88 -79.75 -0.55 -3.20 16 20 N 0.05 0.89 4.45 34.06 0.15 1.04 16 21 O -0.20 -3.10 18.47 -29.46 -0.54 -3.65 16 22 O -0.13 -2.48 17.44 -36.39 -0.63 -3.11 16 23 C 0.53 7.78 7.40 -15.45 -0.11 7.66 16 24 O -0.49 -8.93 14.27 -16.92 -0.24 -9.17 16 25 C -0.06 -0.81 9.69 -39.60 -0.38 -1.19 16 26 C -0.20 -3.71 9.99 -39.39 -0.39 -4.10 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 29 H 0.12 2.10 7.50 -52.49 -0.39 1.71 16 30 H 0.11 1.23 7.33 -51.93 -0.38 0.85 16 31 H 0.10 0.63 7.95 -51.93 -0.41 0.22 16 32 H 0.18 0.33 8.04 -52.49 -0.42 -0.09 16 33 H 0.17 0.30 8.06 -52.49 -0.42 -0.12 16 34 H 0.16 1.05 7.62 -52.49 -0.40 0.65 16 35 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -35.44 328.54 -7.67 -43.11 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -2.98 Total: 1.31 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -3.80 Total: -16.15 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.60 Total: -27.86 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.42 Total: -20.54 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.44 -7.67 -43.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731158635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.335 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds