Wall clock time and date at job start Tue Mar 31 2020 11:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 120.00050 * 2 1 4 4 H 1.48501 * 109.46941 * 269.99891 * 3 2 1 5 5 H 1.48497 * 109.47167 * 29.99855 * 3 2 1 6 6 H 1.48502 * 109.47118 * 149.99992 * 3 2 1 7 7 C 1.38662 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00205 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.35752 * 117.00147 * 185.04986 * 9 7 2 11 11 C 1.38885 * 120.06631 * 354.47258 * 10 9 7 12 12 C 1.38092 * 119.93039 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.06894 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.93234 * 179.97438 * 13 12 11 15 15 N 1.46495 * 109.47593 * 89.99903 * 14 13 12 16 16 C 1.35759 * 119.62520 * 90.00103 * 15 14 13 17 17 C 1.35353 * 120.70504 * 180.02562 * 16 15 14 18 18 C 1.40194 * 119.94574 * 359.97271 * 17 16 15 19 19 C 1.36402 * 119.26340 * 0.25724 * 18 17 16 20 20 N 1.48011 * 120.34436 * 179.74926 * 19 18 17 21 21 O 1.21795 * 119.99902 * 0.02562 * 20 19 18 22 22 O 1.21798 * 119.99740 * 179.97438 * 20 19 18 23 23 C 1.34658 * 119.62767 * 270.02464 * 15 14 13 24 24 O 1.22071 * 119.98032 * 0.02562 * 23 15 14 25 25 C 1.38306 * 120.14226 * 0.25567 * 13 12 11 26 26 C 1.38107 * 120.06325 * 359.44782 * 25 13 12 27 27 H 0.96999 * 120.00268 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.02894 * 359.97438 * 11 10 9 29 29 H 1.07996 * 119.96727 * 179.97438 * 12 11 10 30 30 H 1.08998 * 109.47085 * 329.99624 * 14 13 12 31 31 H 1.09003 * 109.47419 * 210.00668 * 14 13 12 32 32 H 1.08002 * 119.65063 * 359.97438 * 16 15 14 33 33 H 1.08001 * 120.02809 * 180.02562 * 17 16 15 34 34 H 1.07994 * 120.36812 * 179.97438 * 18 17 16 35 35 H 1.07991 * 119.97156 * 179.70609 * 25 13 12 36 36 H 1.07995 * 120.03338 * 180.27829 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1075 11 6 3.4572 -3.4395 0.0951 12 6 4.2023 -4.5971 0.2036 13 6 3.5685 -5.8204 0.3240 14 6 4.3847 -7.0818 0.4417 15 7 4.6553 -7.3584 1.8546 16 6 3.7873 -8.1210 2.5673 17 6 4.0156 -8.3899 3.8741 18 6 5.1590 -7.8791 4.5043 19 6 6.0276 -7.1092 3.7877 20 7 7.2393 -6.5531 4.4305 21 8 7.4653 -6.7826 5.6051 22 8 8.0108 -5.8669 3.7846 23 6 5.7621 -6.8531 2.4317 24 8 6.5326 -6.1684 1.7779 25 6 2.1872 -5.8892 0.3309 26 6 1.4364 -4.7345 0.2289 27 1 -0.4850 0.8400 -0.0004 28 1 3.9526 -2.4846 -0.0001 29 1 5.2811 -4.5472 0.1936 30 1 5.3273 -6.9556 -0.0909 31 1 3.8311 -7.9146 0.0079 32 1 2.9047 -8.5166 2.0868 33 1 3.3179 -8.9981 4.4306 34 1 5.3477 -8.0890 5.5467 35 1 1.6952 -6.8464 0.4203 36 1 0.3579 -4.7884 0.2388 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731158635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:20 Heat of formation + Delta-G solvation = -20.509584 kcal Electronic energy + Delta-G solvation = -25282.681518 eV Core-core repulsion = 21315.091814 eV Total energy + Delta-G solvation = -3967.589704 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.39514 -42.37019 -40.81564 -38.63086 -38.44876 -37.37787 -36.04713 -34.38961 -32.19251 -31.88172 -31.39338 -28.03993 -27.85194 -26.99204 -24.38432 -24.18909 -23.59712 -22.28340 -20.47902 -19.97974 -19.87643 -19.02021 -18.61252 -18.36930 -18.13071 -17.34088 -17.13908 -16.47446 -16.33536 -15.84648 -15.73868 -15.61639 -15.12852 -14.59475 -14.31705 -14.04187 -13.78190 -13.72518 -13.46261 -13.13910 -13.06204 -12.67569 -12.64972 -12.57056 -12.41323 -12.27786 -12.21816 -12.20468 -11.60639 -11.40924 -11.27453 -10.88183 -9.88489 -9.52787 -9.10925 -8.56851 -6.24887 -1.27762 0.04937 0.26374 0.50897 0.55876 0.59169 1.29408 1.35487 1.45268 1.52446 2.10388 2.19718 2.72897 3.05399 3.12113 3.41965 3.62188 3.63126 3.70447 3.79786 3.88943 4.05648 4.19070 4.36720 4.46650 4.56353 4.64603 4.72367 4.91502 4.96358 5.05018 5.16016 5.21549 5.29983 5.44175 5.55406 5.63747 5.73288 5.93820 6.10610 6.55214 6.59325 6.88391 7.64880 8.65267 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.003377 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.158084 B = 8288.833563 C = 9260.217532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.013 4.013 3 Si 1.012 2.988 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.419 4.419 8 H 0.092 0.908 9 O -0.223 6.223 10 C 0.124 3.876 11 C -0.257 4.257 12 C -0.053 4.053 13 C -0.200 4.200 14 C 0.148 3.852 15 N -0.478 5.478 16 C 0.225 3.775 17 C -0.238 4.238 18 C 0.104 3.896 19 C -0.244 4.244 20 N 0.059 4.941 21 O -0.172 6.172 22 O -0.234 6.234 23 C 0.520 3.480 24 O -0.547 6.547 25 C -0.029 4.029 26 C -0.202 4.202 27 H 0.276 0.724 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.173 0.827 32 H 0.248 0.752 33 H 0.224 0.776 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 -24.740 5.752 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.212 4.212 3 Si 0.831 3.169 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.110 0.890 9 O -0.129 6.129 10 C 0.073 3.927 11 C -0.277 4.277 12 C -0.072 4.072 13 C -0.201 4.201 14 C 0.029 3.971 15 N -0.183 5.183 16 C 0.093 3.907 17 C -0.259 4.259 18 C 0.080 3.920 19 C -0.335 4.335 20 N 0.563 4.437 21 O -0.387 6.387 22 O -0.432 6.432 23 C 0.319 3.681 24 O -0.428 6.428 25 C -0.046 4.046 26 C -0.221 4.221 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.190 0.810 32 H 0.264 0.736 33 H 0.241 0.759 34 H 0.202 0.798 35 H 0.206 0.794 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.145 -24.269 4.855 24.776 hybrid contribution 1.243 2.047 0.148 2.400 sum 2.388 -22.222 5.002 22.903 Atomic orbital electron populations 1.70133 1.07671 1.29024 1.48006 1.26450 0.96843 1.02346 0.95568 0.84689 0.77657 0.75086 0.79468 1.18472 1.18868 1.18733 1.21716 0.92209 0.81686 1.53879 0.89034 1.83925 1.35754 1.12558 1.80665 1.20118 0.90927 0.88694 0.92987 1.21184 0.93868 0.99499 1.13138 1.20951 0.98836 0.92447 0.94992 1.19699 0.94419 0.93767 1.12230 1.21134 1.01620 0.97138 0.77179 1.46063 1.18551 1.39664 1.14061 1.23931 0.91952 0.81953 0.92854 1.21448 0.99997 1.09997 0.94505 1.22175 0.87666 0.80342 1.01826 1.21758 0.95643 1.19629 0.96482 1.43280 1.01852 0.98333 1.00191 1.94401 1.80326 1.63800 1.00174 1.94648 1.45422 1.38485 1.64685 1.16286 0.82809 0.81900 0.87081 1.91094 1.47615 1.39101 1.64975 1.21125 0.91538 0.98163 0.93821 1.20628 1.00699 0.89941 1.10867 0.91517 0.87934 0.87438 0.89073 0.80969 0.73563 0.75938 0.79822 0.79396 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.95 13.67 21.62 0.30 -54.65 16 2 C -0.01 -0.75 5.49 84.84 0.47 -0.28 16 3 Si 1.01 43.83 29.55 68.60 2.03 45.86 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.42 -24.73 9.49 67.92 0.64 -24.08 16 8 H 0.09 5.18 5.20 -2.91 -0.02 5.16 16 9 O -0.22 -13.13 9.76 -22.78 -0.22 -13.36 16 10 C 0.12 5.91 6.65 22.58 0.15 6.06 16 11 C -0.26 -11.70 9.17 22.39 0.21 -11.49 16 12 C -0.05 -1.97 9.69 22.25 0.22 -1.75 16 13 C -0.20 -5.00 5.46 -19.83 -0.11 -5.11 16 14 C 0.15 2.19 5.46 85.63 0.47 2.65 16 15 N -0.48 -7.36 2.57 -655.07 -1.68 -9.04 16 16 C 0.23 0.64 10.28 83.42 0.86 1.50 16 17 C -0.24 -0.53 10.01 22.08 0.22 -0.31 16 18 C 0.10 1.28 9.60 22.32 0.21 1.50 16 19 C -0.24 -6.32 6.88 36.51 0.25 -6.07 16 20 N 0.06 2.05 4.45 -46.16 -0.21 1.84 16 21 O -0.17 -5.47 18.47 18.89 0.35 -5.12 16 22 O -0.23 -9.96 17.44 25.51 0.45 -9.52 16 23 C 0.52 14.54 7.40 84.82 0.63 15.17 16 24 O -0.55 -21.21 14.27 15.27 0.22 -21.00 16 25 C -0.03 -0.64 9.69 22.25 0.22 -0.42 16 26 C -0.20 -7.15 9.99 22.39 0.22 -6.92 16 27 H 0.28 15.17 8.31 -92.71 -0.77 14.39 16 28 H 0.10 5.06 5.64 -2.91 -0.02 5.05 16 29 H 0.11 4.14 7.50 -2.91 -0.02 4.12 16 30 H 0.09 1.80 7.33 -2.39 -0.02 1.78 16 31 H 0.17 0.30 7.95 -2.39 -0.02 0.28 16 32 H 0.25 -2.48 8.04 -2.91 -0.02 -2.50 16 33 H 0.22 -1.74 8.06 -2.91 -0.02 -1.76 16 34 H 0.18 1.41 7.62 -2.91 -0.02 1.38 16 35 H 0.19 1.49 8.06 -2.92 -0.02 1.47 16 36 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -98.36 328.54 7.02 -91.34 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.14 Total: 3.21 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 4.65 Total: -29.57 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -1.59 Total: -61.85 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: 0.79 Total: -48.99 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -98.36 7.02 -91.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731158635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.834 kcal (2) G-P(sol) polarization free energy of solvation -98.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds