Wall clock time and date at job start Tue Mar 31 2020 11:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48497 * 109.46916 * 270.00267 * 3 2 1 5 5 H 1.48510 * 109.47020 * 29.99884 * 3 2 1 6 6 H 1.48495 * 109.47323 * 149.99890 * 3 2 1 7 7 C 1.38946 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00512 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00054 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00200 * 180.02562 * 10 9 7 13 13 O 1.45193 * 109.47490 * 180.02562 * 12 10 9 14 14 C 1.34760 * 117.00479 * 180.02562 * 13 12 10 15 15 O 1.21513 * 119.99797 * 359.97438 * 14 13 12 16 16 C 1.47454 * 120.00439 * 179.97438 * 14 13 12 17 17 C 1.39868 * 120.00635 * 179.97438 * 16 14 13 18 18 C 1.36562 * 119.99196 * 179.69487 * 17 16 14 19 19 C 1.39825 * 120.00565 * 0.27837 * 18 17 16 20 20 C 1.47572 * 119.98987 * 179.97438 * 19 18 17 21 21 C 1.35963 * 126.59623 * 179.71333 * 20 19 18 22 22 N 1.34020 * 107.49566 * 179.87755 * 21 20 19 23 23 C 1.30427 * 108.92534 * 0.39609 * 22 21 20 24 24 O 1.33931 * 109.07124 * 359.75119 * 23 22 21 25 25 C 1.39816 * 120.01052 * 359.97438 * 19 18 17 26 26 C 1.36557 * 120.01208 * 0.04663 * 25 19 18 27 27 H 0.96999 * 119.99674 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99914 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47107 * 59.99840 * 12 10 9 30 30 H 1.09004 * 109.47143 * 300.00554 * 12 10 9 31 31 H 1.08002 * 120.00720 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.99729 * 180.29798 * 18 17 16 33 33 H 1.08004 * 126.25001 * 0.02562 * 21 20 19 34 34 H 1.08006 * 125.46373 * 179.75233 * 23 22 21 35 35 H 1.08001 * 119.99457 * 180.02562 * 25 19 18 36 36 H 1.07996 * 120.00648 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 8 2.1873 -5.9666 -0.0027 14 6 1.6722 -7.2119 -0.0038 15 8 0.4676 -7.3711 -0.0038 16 6 2.5704 -8.3813 -0.0049 17 6 2.0359 -9.6738 -0.0055 18 6 2.8680 -10.7566 -0.0128 19 6 4.2542 -10.5733 -0.0139 20 6 5.1530 -11.7436 -0.0212 21 6 6.5125 -11.7216 -0.0285 22 7 6.9361 -12.9931 -0.0308 23 6 5.8992 -13.7843 -0.0338 24 8 4.7834 -13.0436 -0.0280 25 6 4.7887 -9.2813 -0.0079 26 6 3.9571 -8.1981 -0.0001 27 1 -0.4849 0.8401 -0.0004 28 1 0.3534 -2.3906 -0.0005 29 1 0.6168 -4.9201 -0.8919 30 1 0.6174 -4.9213 0.8880 31 1 0.9652 -9.8155 -0.0047 32 1 2.4554 -11.7547 -0.0181 33 1 7.1369 -10.8403 -0.0296 34 1 5.9348 -14.8638 -0.0399 35 1 5.8594 -9.1400 -0.0092 36 1 4.3701 -7.2003 0.0040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:59 Heat of formation + Delta-G solvation = -66.154482 kcal Electronic energy + Delta-G solvation = -23866.427958 eV Core-core repulsion = 19896.858943 eV Total energy + Delta-G solvation = -3969.569015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.73049 -40.60247 -39.16952 -38.07988 -36.13903 -35.24722 -34.02728 -33.12018 -31.63438 -31.39869 -29.54564 -28.25764 -25.26171 -24.38759 -23.78032 -22.24979 -22.11770 -20.84453 -19.61467 -18.62295 -18.09667 -17.99037 -17.03143 -16.88484 -16.40934 -16.35522 -15.72528 -15.36187 -14.81258 -14.59034 -14.40747 -14.17821 -14.08511 -13.90608 -13.76217 -13.21377 -13.09057 -12.52890 -12.32417 -12.05627 -11.85864 -11.63998 -11.45659 -11.15159 -11.03315 -10.57861 -10.47279 -10.45406 -10.32497 -10.31341 -9.62680 -9.49220 -8.55962 -8.55604 -8.10622 -6.51999 -3.94170 -0.12901 1.03314 1.25816 2.18317 2.19414 2.57265 2.59922 3.11855 3.22370 3.28317 3.50603 3.71224 3.75217 4.08004 4.13164 4.46772 4.48509 4.51702 4.59505 4.88044 4.91928 5.04189 5.12951 5.16320 5.35390 5.37991 5.50076 5.63213 5.66258 5.81352 5.89382 5.94991 6.01347 6.06734 6.37817 6.51654 7.20037 7.45880 7.75019 7.92672 8.45830 9.04819 9.36842 9.86357 10.65120 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.002061 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.284795 B =13583.529539 C =14431.644513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.061 3.939 13 O -0.320 6.320 14 C 0.503 3.497 15 O -0.508 6.508 16 C -0.109 4.109 17 C -0.051 4.051 18 C -0.114 4.114 19 C 0.012 3.988 20 C -0.007 4.007 21 C -0.013 4.013 22 N -0.487 5.487 23 C 0.176 3.824 24 O -0.197 6.197 25 C -0.108 4.108 26 C -0.051 4.051 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.190 0.810 34 H 0.253 0.747 35 H 0.140 0.860 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 -24.422 -0.036 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.461 6.461 12 C -0.016 4.016 13 O -0.234 6.234 14 C 0.347 3.653 15 O -0.398 6.398 16 C -0.111 4.111 17 C -0.069 4.069 18 C -0.132 4.132 19 C 0.012 3.988 20 C -0.060 4.060 21 C -0.153 4.153 22 N -0.215 5.215 23 C -0.049 4.049 24 O -0.083 6.083 25 C -0.126 4.126 26 C -0.069 4.069 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.207 0.793 34 H 0.268 0.732 35 H 0.157 0.843 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.767 -24.495 -0.029 25.412 hybrid contribution -1.111 0.947 -0.010 1.460 sum 5.656 -23.548 -0.039 24.218 Atomic orbital electron populations 1.69615 1.06001 1.28514 1.49557 1.25321 0.95699 0.99899 0.96856 0.85790 0.79224 0.80387 0.78503 1.20255 1.20810 1.19271 1.19725 0.93483 0.81723 1.48241 0.87582 1.41704 1.09395 1.04083 1.63714 1.19287 0.88328 0.84031 0.86063 1.90557 1.13377 1.86782 1.55357 1.22790 0.90801 0.84338 1.03681 1.86587 1.40050 1.13828 1.82953 1.21116 0.87126 0.83844 0.73187 1.90837 1.15974 1.86990 1.46044 1.19343 0.93260 0.91316 1.07148 1.20969 1.01268 0.90109 0.94585 1.20916 0.91741 0.99614 1.00926 1.17888 0.91711 0.88936 1.00301 1.21458 0.94174 0.81983 1.08413 1.23459 0.91882 0.95751 1.04240 1.70375 1.31783 1.01677 1.17620 1.28222 0.77148 0.99615 0.99898 1.84477 1.37645 1.16729 1.69472 1.20816 1.00882 0.89985 1.00905 1.21350 0.91780 1.00577 0.93163 0.91606 0.77133 0.89364 0.89372 0.83778 0.84535 0.79291 0.73150 0.84268 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.81 13.05 55.50 0.72 -23.09 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 10 C 0.44 10.34 7.86 -10.99 -0.09 10.26 16 11 O -0.58 -15.61 16.08 -14.12 -0.23 -15.83 16 12 C 0.06 1.14 5.95 36.00 0.21 1.36 16 13 O -0.32 -5.78 8.99 -47.34 -0.43 -6.20 16 14 C 0.50 7.94 7.89 34.48 0.27 8.21 16 15 O -0.51 -8.77 16.12 -19.28 -0.31 -9.08 16 16 C -0.11 -1.37 5.88 -104.92 -0.62 -1.99 16 17 C -0.05 -0.54 9.53 -39.58 -0.38 -0.91 16 18 C -0.11 -1.03 9.67 -39.59 -0.38 -1.41 16 19 C 0.01 0.11 5.88 -104.91 -0.62 -0.50 16 20 C -0.01 -0.07 7.06 -36.59 -0.26 -0.32 16 21 C -0.01 -0.11 11.29 -17.41 -0.20 -0.31 16 22 N -0.49 -4.43 11.27 -14.66 -0.17 -4.60 16 23 C 0.18 1.13 13.21 52.17 0.69 1.82 16 24 O -0.20 -1.62 10.57 4.30 0.05 -1.57 16 25 C -0.11 -0.96 9.51 -39.60 -0.38 -1.34 16 26 C -0.05 -0.56 9.56 -39.57 -0.38 -0.94 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.40 9.32 7.90 -40.82 -0.32 9.00 16 29 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.14 1.41 7.64 -52.49 -0.40 1.01 16 32 H 0.14 0.99 7.93 -52.49 -0.42 0.58 16 33 H 0.19 1.18 7.29 -52.48 -0.38 0.79 16 34 H 0.25 0.31 8.06 -52.48 -0.42 -0.11 16 35 H 0.14 0.88 7.02 -52.49 -0.37 0.52 16 36 H 0.16 1.78 7.59 -52.49 -0.40 1.38 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -34.04 335.88 -5.80 -39.84 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.07 Total: 7.73 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -2.35 Total: 6.07 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.50 Total: -41.48 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.92 Total: -32.69 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.04 -5.80 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.319 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds