Wall clock time and date at job start Tue Mar 31 2020 11:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48497 * 109.46916 * 270.00267 * 3 2 1 5 5 H 1.48510 * 109.47020 * 29.99884 * 3 2 1 6 6 H 1.48495 * 109.47323 * 149.99890 * 3 2 1 7 7 C 1.38946 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00512 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00054 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00200 * 180.02562 * 10 9 7 13 13 O 1.45193 * 109.47490 * 180.02562 * 12 10 9 14 14 C 1.34760 * 117.00479 * 180.02562 * 13 12 10 15 15 O 1.21513 * 119.99797 * 359.97438 * 14 13 12 16 16 C 1.47454 * 120.00439 * 179.97438 * 14 13 12 17 17 C 1.39868 * 120.00635 * 179.97438 * 16 14 13 18 18 C 1.36562 * 119.99196 * 179.69487 * 17 16 14 19 19 C 1.39825 * 120.00565 * 0.27837 * 18 17 16 20 20 C 1.47572 * 119.98987 * 179.97438 * 19 18 17 21 21 C 1.35963 * 126.59623 * 179.71333 * 20 19 18 22 22 N 1.34020 * 107.49566 * 179.87755 * 21 20 19 23 23 C 1.30427 * 108.92534 * 0.39609 * 22 21 20 24 24 O 1.33931 * 109.07124 * 359.75119 * 23 22 21 25 25 C 1.39816 * 120.01052 * 359.97438 * 19 18 17 26 26 C 1.36557 * 120.01208 * 0.04663 * 25 19 18 27 27 H 0.96999 * 119.99674 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99914 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47107 * 59.99840 * 12 10 9 30 30 H 1.09004 * 109.47143 * 300.00554 * 12 10 9 31 31 H 1.08002 * 120.00720 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.99729 * 180.29798 * 18 17 16 33 33 H 1.08004 * 126.25001 * 0.02562 * 21 20 19 34 34 H 1.08006 * 125.46373 * 179.75233 * 23 22 21 35 35 H 1.08001 * 119.99457 * 180.02562 * 25 19 18 36 36 H 1.07996 * 120.00648 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 8 2.1873 -5.9666 -0.0027 14 6 1.6722 -7.2119 -0.0038 15 8 0.4676 -7.3711 -0.0038 16 6 2.5704 -8.3813 -0.0049 17 6 2.0359 -9.6738 -0.0055 18 6 2.8680 -10.7566 -0.0128 19 6 4.2542 -10.5733 -0.0139 20 6 5.1530 -11.7436 -0.0212 21 6 6.5125 -11.7216 -0.0285 22 7 6.9361 -12.9931 -0.0308 23 6 5.8992 -13.7843 -0.0338 24 8 4.7834 -13.0436 -0.0280 25 6 4.7887 -9.2813 -0.0079 26 6 3.9571 -8.1981 -0.0001 27 1 -0.4849 0.8401 -0.0004 28 1 0.3534 -2.3906 -0.0005 29 1 0.6168 -4.9201 -0.8919 30 1 0.6174 -4.9213 0.8880 31 1 0.9652 -9.8155 -0.0047 32 1 2.4554 -11.7547 -0.0181 33 1 7.1369 -10.8403 -0.0296 34 1 5.9348 -14.8638 -0.0399 35 1 5.8594 -9.1400 -0.0092 36 1 4.3701 -7.2003 0.0040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:59 Heat of formation + Delta-G solvation = -89.547500 kcal Electronic energy + Delta-G solvation = -23867.442356 eV Core-core repulsion = 19896.858943 eV Total energy + Delta-G solvation = -3970.583413 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.30903 -41.80804 -40.32361 -39.72366 -37.53049 -36.03413 -35.84483 -33.91113 -33.41291 -32.40504 -30.54437 -29.57575 -26.77786 -25.65921 -24.45823 -23.11266 -22.79696 -21.81111 -21.43862 -20.07945 -19.44411 -18.95553 -18.12265 -17.75034 -17.61724 -17.52877 -17.10670 -16.57198 -16.16973 -15.80464 -15.77604 -15.45591 -15.10898 -14.78928 -14.63997 -14.36665 -14.27538 -13.74316 -13.71617 -13.56037 -13.29966 -12.93969 -12.47583 -12.47043 -12.21698 -12.12057 -11.90737 -11.83130 -11.63028 -11.57754 -11.08163 -10.52096 -10.25475 -10.12048 -9.25174 -8.52456 -6.03087 -0.92394 0.27411 0.53300 1.28482 1.35801 1.38945 1.44596 1.57464 1.63633 1.75300 1.86624 2.29505 2.67316 3.00317 3.13121 3.32280 3.45677 3.59721 3.74913 3.80986 3.96571 4.03442 4.12148 4.14357 4.20898 4.24918 4.52677 4.69276 4.74091 4.91344 5.05169 5.15708 5.26618 5.27301 5.32210 5.37145 5.60556 5.88637 6.43366 6.55169 6.63792 7.02541 7.39401 7.92496 8.64473 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.002061 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.284795 B =13583.529539 C =14431.644513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.071 3.929 13 O -0.336 6.336 14 C 0.505 3.495 15 O -0.528 6.528 16 C -0.135 4.135 17 C -0.047 4.047 18 C -0.112 4.112 19 C 0.022 3.978 20 C -0.030 4.030 21 C -0.012 4.012 22 N -0.525 5.525 23 C 0.198 3.802 24 O -0.204 6.204 25 C -0.104 4.104 26 C -0.055 4.055 27 H 0.281 0.719 28 H 0.400 0.600 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.149 0.851 32 H 0.157 0.843 33 H 0.206 0.794 34 H 0.298 0.702 35 H 0.165 0.835 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.377 -26.110 -0.059 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.006 4.006 13 O -0.251 6.251 14 C 0.351 3.649 15 O -0.419 6.419 16 C -0.136 4.136 17 C -0.065 4.065 18 C -0.129 4.129 19 C 0.021 3.979 20 C -0.083 4.083 21 C -0.151 4.151 22 N -0.253 5.253 23 C -0.026 4.026 24 O -0.091 6.091 25 C -0.122 4.122 26 C -0.073 4.073 27 H 0.090 0.910 28 H 0.234 0.766 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.167 0.833 32 H 0.175 0.825 33 H 0.223 0.777 34 H 0.313 0.687 35 H 0.183 0.817 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.248 -26.194 -0.054 27.178 hybrid contribution -1.183 1.249 -0.004 1.720 sum 6.065 -24.945 -0.058 25.672 Atomic orbital electron populations 1.69675 1.06949 1.29717 1.49157 1.26137 0.96599 1.02622 0.95681 0.84845 0.77897 0.76328 0.78776 1.19475 1.19490 1.19497 1.19725 0.92971 0.83321 1.50620 0.89664 1.41739 1.09579 1.04180 1.64005 1.20049 0.88087 0.85296 0.84168 1.90522 1.15333 1.87671 1.56731 1.22561 0.90150 0.82343 1.05525 1.86587 1.40355 1.14615 1.83550 1.21649 0.87472 0.83536 0.72212 1.90813 1.16804 1.86987 1.47322 1.19297 0.93377 0.90667 1.10284 1.21033 1.01756 0.89556 0.94204 1.21110 0.91628 1.00014 1.00184 1.18023 0.91935 0.89270 0.98631 1.21356 0.94153 0.82244 1.10502 1.23821 0.92057 0.96402 1.02843 1.70423 1.33034 1.02188 1.19623 1.29333 0.76029 1.01027 0.96235 1.84485 1.38364 1.16551 1.69669 1.21012 1.01923 0.89288 0.99950 1.21295 0.91488 1.00869 0.93655 0.90981 0.76557 0.87427 0.87436 0.83327 0.82514 0.77750 0.68706 0.81741 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.37 13.05 21.66 0.28 -48.08 16 2 C -0.01 -0.50 5.50 84.92 0.47 -0.04 16 3 Si 1.00 41.79 29.55 68.60 2.03 43.82 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.34 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.41 5.29 -306.99 -1.62 -30.03 16 10 C 0.44 21.16 7.86 87.66 0.69 21.85 16 11 O -0.62 -34.48 16.08 15.72 0.25 -34.22 16 12 C 0.07 2.68 5.95 71.23 0.42 3.10 16 13 O -0.34 -12.38 8.99 -50.32 -0.45 -12.83 16 14 C 0.50 16.14 7.89 70.25 0.55 16.69 16 15 O -0.53 -18.25 16.12 19.79 0.32 -17.93 16 16 C -0.14 -3.40 5.88 -20.06 -0.12 -3.52 16 17 C -0.05 -0.96 9.53 22.27 0.21 -0.75 16 18 C -0.11 -1.83 9.67 22.26 0.22 -1.62 16 19 C 0.02 0.37 5.88 -20.05 -0.12 0.25 16 20 C -0.03 -0.47 7.06 24.21 0.17 -0.30 16 21 C -0.01 -0.18 11.29 83.83 0.95 0.77 16 22 N -0.52 -8.34 11.27 -315.02 -3.55 -11.89 16 23 C 0.20 1.93 13.21 130.45 1.72 3.65 16 24 O -0.20 -2.81 10.57 -7.53 -0.08 -2.89 16 25 C -0.10 -1.73 9.51 22.26 0.21 -1.52 16 26 C -0.05 -1.21 9.56 22.27 0.21 -1.00 16 27 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.40 19.21 7.90 -92.71 -0.73 18.47 16 29 H 0.11 3.61 8.14 -2.39 -0.02 3.60 16 30 H 0.11 3.61 8.14 -2.38 -0.02 3.59 16 31 H 0.15 2.80 7.64 -2.91 -0.02 2.78 16 32 H 0.16 1.91 7.93 -2.91 -0.02 1.88 16 33 H 0.21 2.13 7.29 -2.91 -0.02 2.11 16 34 H 0.30 -0.55 8.06 -2.91 -0.02 -0.57 16 35 H 0.17 1.79 7.02 -2.91 -0.02 1.77 16 36 H 0.14 3.46 7.59 -2.91 -0.02 3.43 16 Total: -1.00 -74.19 335.88 4.01 -70.18 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.43 Total: 24.29 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.41 Total: 19.59 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -4.89 Total: -90.01 kcal Atomic # 8 Polarization: -67.91 SS G_CDS: 0.04 Total: -67.87 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -74.19 4.01 -70.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.363 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds