Wall clock time and date at job start Tue Mar 31 2020 11:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 119.99546 * 2 1 4 4 H 1.48501 * 109.46829 * 269.99642 * 3 2 1 5 5 H 1.48495 * 109.47434 * 29.99892 * 3 2 1 6 6 H 1.48500 * 109.46923 * 150.00455 * 3 2 1 7 7 C 1.38947 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00115 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99743 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99934 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00181 * 180.02562 * 10 9 7 13 13 O 1.45192 * 109.47299 * 179.97438 * 12 10 9 14 14 C 1.34842 * 117.00194 * 179.97438 * 13 12 10 15 15 O 1.21579 * 119.99573 * 0.02562 * 14 13 12 16 16 C 1.46967 * 119.99918 * 179.97438 * 14 13 12 17 17 N 1.35927 * 126.63269 * 5.44628 * 16 14 13 18 18 C 1.29917 * 108.73698 * 180.25194 * 17 16 14 19 19 O 1.34057 * 109.80093 * 359.74854 * 18 17 16 20 20 C 1.34742 * 108.25584 * 0.02562 * 19 18 17 21 21 C 1.47564 * 126.76724 * 179.97438 * 20 19 18 22 22 C 1.39697 * 120.15344 * 231.12654 * 21 20 19 23 23 C 1.37923 * 119.83997 * 179.97438 * 22 21 20 24 24 C 1.38381 * 120.15770 * 0.02562 * 23 22 21 25 25 C 1.38381 * 120.31419 * 0.02562 * 24 23 22 26 26 C 1.37929 * 120.15840 * 359.97438 * 25 24 23 27 27 H 0.96996 * 120.00058 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00243 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47466 * 59.99318 * 12 10 9 30 30 H 1.09004 * 109.46783 * 299.99906 * 12 10 9 31 31 H 1.08000 * 125.09203 * 179.75576 * 18 17 16 32 32 H 1.08004 * 120.07997 * 0.25492 * 22 21 20 33 33 H 1.08002 * 119.92192 * 179.97438 * 23 22 21 34 34 H 1.08003 * 119.84424 * 179.97438 * 24 23 22 35 35 H 1.08001 * 119.92018 * 179.97438 * 25 24 23 36 36 H 1.07996 * 120.07694 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.6999 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2104 -3.5577 0.0021 12 6 1.2440 -4.8629 0.0010 13 8 2.1876 -5.9665 0.0017 14 6 1.6723 -7.2125 0.0019 15 8 0.4670 -7.3718 0.0009 16 6 2.5677 -8.3780 0.0020 17 7 3.9229 -8.3596 0.1056 18 6 4.3613 -9.5818 0.0625 19 8 3.3307 -10.4298 -0.0628 20 6 2.1930 -9.7088 -0.1007 21 6 0.8195 -10.2323 -0.2314 22 6 -0.0381 -9.7168 -1.2062 23 6 -1.3204 -10.2112 -1.3230 24 6 -1.7582 -11.2150 -0.4770 25 6 -0.9144 -11.7295 0.4916 26 6 0.3705 -11.2448 0.6199 27 1 -0.4850 0.8400 -0.0004 28 1 0.3535 -2.3906 0.0005 29 1 0.6183 -4.9209 -0.8896 30 1 0.6164 -4.9205 0.8903 31 1 5.4003 -9.8710 0.1191 32 1 0.3037 -8.9362 -1.8698 33 1 -1.9846 -9.8134 -2.0760 34 1 -2.7634 -11.5981 -0.5727 35 1 -1.2629 -12.5126 1.1487 36 1 1.0277 -11.6470 1.3765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732577180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:02 Heat of formation + Delta-G solvation = -60.921228 kcal Electronic energy + Delta-G solvation = -24688.148860 eV Core-core repulsion = 20718.806776 eV Total energy + Delta-G solvation = -3969.342084 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.60860 -40.12286 -39.25710 -38.07643 -36.09457 -35.14155 -33.95781 -32.80733 -31.34425 -31.26350 -29.49798 -28.31235 -25.29096 -24.24265 -23.68763 -22.78219 -21.81979 -20.68450 -19.53959 -18.57780 -18.03371 -17.59545 -17.12051 -16.75313 -16.31099 -16.10900 -15.75727 -15.29364 -15.13409 -14.52257 -14.46579 -14.02481 -13.92510 -13.84458 -13.71511 -13.01550 -12.94997 -12.36269 -11.99436 -11.79844 -11.61034 -11.58946 -11.45945 -11.10627 -10.96500 -10.73004 -10.41443 -10.38888 -10.26454 -9.80728 -9.56851 -9.21833 -8.72217 -8.47417 -8.04373 -6.46602 -3.88318 0.26531 1.11880 1.19265 1.76590 2.14545 2.62987 2.98373 3.16035 3.25680 3.32203 3.45937 3.77943 3.81905 4.13901 4.17355 4.55403 4.60442 4.66791 4.80096 4.96119 5.09582 5.10603 5.17607 5.18084 5.34370 5.49442 5.55873 5.71204 5.71525 5.79395 6.08231 6.08357 6.12901 6.19635 6.51415 6.59466 7.18384 7.51357 7.81740 7.98856 8.52776 9.10960 9.43085 9.93659 10.70792 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.002720 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.821731 B =10292.035437 C =11452.529888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.301 4.301 8 H 0.106 0.894 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.571 6.571 12 C 0.060 3.940 13 O -0.303 6.303 14 C 0.546 3.454 15 O -0.496 6.496 16 C -0.034 4.034 17 N -0.434 5.434 18 C 0.177 3.823 19 O -0.189 6.189 20 C 0.088 3.912 21 C -0.035 4.035 22 C -0.048 4.048 23 C -0.120 4.120 24 C -0.098 4.098 25 C -0.127 4.127 26 C -0.085 4.085 27 H 0.273 0.727 28 H 0.395 0.605 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 -25.077 -0.908 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.430 4.430 8 H 0.124 0.876 9 N -0.192 5.192 10 C 0.224 3.776 11 O -0.454 6.454 12 C -0.018 4.018 13 O -0.216 6.216 14 C 0.389 3.611 15 O -0.385 6.385 16 C -0.153 4.153 17 N -0.161 5.161 18 C -0.051 4.051 19 O -0.076 6.076 20 C 0.032 3.968 21 C -0.036 4.036 22 C -0.066 4.066 23 C -0.138 4.138 24 C -0.116 4.116 25 C -0.145 4.145 26 C -0.103 4.103 27 H 0.083 0.917 28 H 0.228 0.772 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.276 0.724 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.423 -24.370 -0.838 24.426 hybrid contribution -0.503 0.397 0.035 0.641 sum -1.926 -23.974 -0.803 24.065 Atomic orbital electron populations 1.69616 1.05977 1.28411 1.49920 1.25300 0.95686 0.99816 0.96988 0.85802 0.79247 0.80455 0.78477 1.20283 1.20836 1.19278 1.19729 0.93489 0.81748 1.48009 0.87626 1.41687 1.09326 1.04016 1.64134 1.19291 0.88362 0.84014 0.85938 1.90588 1.13351 1.86692 1.54775 1.22833 0.90834 0.84490 1.03630 1.86734 1.39349 1.13202 1.82326 1.19334 0.85538 0.82829 0.73371 1.90910 1.14529 1.86707 1.46393 1.20787 0.90197 0.91116 1.13191 1.70881 1.08236 1.22186 1.14787 1.28235 0.94286 0.82081 1.00484 1.84506 1.14836 1.39494 1.68739 1.21750 0.86376 0.88463 1.00236 1.17473 0.87007 0.99449 0.99636 1.21107 0.93212 0.96823 0.95484 1.21076 0.95437 0.97151 1.00130 1.21367 0.99680 0.95928 0.94609 1.21039 0.93535 1.00809 0.99132 1.21210 0.96525 0.94716 0.97851 0.91682 0.77178 0.89335 0.89321 0.72367 0.85520 0.85080 0.85515 0.85342 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 8 H 0.11 3.10 7.16 -52.49 -0.38 2.73 16 9 N -0.55 -14.30 5.29 -10.96 -0.06 -14.35 16 10 C 0.44 10.98 7.86 -10.99 -0.09 10.89 16 11 O -0.57 -16.56 16.08 -14.12 -0.23 -16.79 16 12 C 0.06 1.19 5.96 36.00 0.21 1.40 16 13 O -0.30 -6.28 9.77 -47.57 -0.46 -6.74 16 14 C 0.55 9.76 7.90 34.27 0.27 10.03 16 15 O -0.50 -8.71 13.63 -19.33 -0.26 -8.97 16 16 C -0.03 -0.53 7.09 -82.37 -0.58 -1.11 16 17 N -0.43 -6.52 11.34 -11.05 -0.13 -6.64 16 18 C 0.18 1.73 13.16 51.95 0.68 2.41 16 19 O -0.19 -2.00 10.74 5.15 0.06 -1.95 16 20 C 0.09 1.13 6.85 -35.63 -0.24 0.89 16 21 C -0.04 -0.41 5.27 -105.01 -0.55 -0.97 16 22 C -0.05 -0.55 7.73 -39.15 -0.30 -0.86 16 23 C -0.12 -1.12 10.03 -39.64 -0.40 -1.52 16 24 C -0.10 -0.79 10.04 -39.48 -0.40 -1.18 16 25 C -0.13 -1.03 10.03 -39.64 -0.40 -1.42 16 26 C -0.08 -0.82 9.79 -39.15 -0.38 -1.20 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.26 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.13 1.51 7.61 -52.48 -0.40 1.11 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -35.64 335.18 -5.94 -41.58 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.19 Total: 7.13 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -2.42 Total: 9.33 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.54 Total: -44.62 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.90 Total: -34.45 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.64 -5.94 -41.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732577180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.342 kcal (2) G-P(sol) polarization free energy of solvation -35.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds