Wall clock time and date at job start Tue Mar 31 2020 11:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 119.99546 * 2 1 4 4 H 1.48501 * 109.46829 * 269.99642 * 3 2 1 5 5 H 1.48495 * 109.47434 * 29.99892 * 3 2 1 6 6 H 1.48500 * 109.46923 * 150.00455 * 3 2 1 7 7 C 1.38947 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00115 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99743 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99934 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00181 * 180.02562 * 10 9 7 13 13 O 1.45192 * 109.47299 * 179.97438 * 12 10 9 14 14 C 1.34842 * 117.00194 * 179.97438 * 13 12 10 15 15 O 1.21579 * 119.99573 * 0.02562 * 14 13 12 16 16 C 1.46967 * 119.99918 * 179.97438 * 14 13 12 17 17 N 1.35927 * 126.63269 * 5.44628 * 16 14 13 18 18 C 1.29917 * 108.73698 * 180.25194 * 17 16 14 19 19 O 1.34057 * 109.80093 * 359.74854 * 18 17 16 20 20 C 1.34742 * 108.25584 * 0.02562 * 19 18 17 21 21 C 1.47564 * 126.76724 * 179.97438 * 20 19 18 22 22 C 1.39697 * 120.15344 * 231.12654 * 21 20 19 23 23 C 1.37923 * 119.83997 * 179.97438 * 22 21 20 24 24 C 1.38381 * 120.15770 * 0.02562 * 23 22 21 25 25 C 1.38381 * 120.31419 * 0.02562 * 24 23 22 26 26 C 1.37929 * 120.15840 * 359.97438 * 25 24 23 27 27 H 0.96996 * 120.00058 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00243 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47466 * 59.99318 * 12 10 9 30 30 H 1.09004 * 109.46783 * 299.99906 * 12 10 9 31 31 H 1.08000 * 125.09203 * 179.75576 * 18 17 16 32 32 H 1.08004 * 120.07997 * 0.25492 * 22 21 20 33 33 H 1.08002 * 119.92192 * 179.97438 * 23 22 21 34 34 H 1.08003 * 119.84424 * 179.97438 * 24 23 22 35 35 H 1.08001 * 119.92018 * 179.97438 * 25 24 23 36 36 H 1.07996 * 120.07694 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.6999 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2104 -3.5577 0.0021 12 6 1.2440 -4.8629 0.0010 13 8 2.1876 -5.9665 0.0017 14 6 1.6723 -7.2125 0.0019 15 8 0.4670 -7.3718 0.0009 16 6 2.5677 -8.3780 0.0020 17 7 3.9229 -8.3596 0.1056 18 6 4.3613 -9.5818 0.0625 19 8 3.3307 -10.4298 -0.0628 20 6 2.1930 -9.7088 -0.1007 21 6 0.8195 -10.2323 -0.2314 22 6 -0.0381 -9.7168 -1.2062 23 6 -1.3204 -10.2112 -1.3230 24 6 -1.7582 -11.2150 -0.4770 25 6 -0.9144 -11.7295 0.4916 26 6 0.3705 -11.2448 0.6199 27 1 -0.4850 0.8400 -0.0004 28 1 0.3535 -2.3906 0.0005 29 1 0.6183 -4.9209 -0.8896 30 1 0.6164 -4.9205 0.8903 31 1 5.4003 -9.8710 0.1191 32 1 0.3037 -8.9362 -1.8698 33 1 -1.9846 -9.8134 -2.0760 34 1 -2.7634 -11.5981 -0.5727 35 1 -1.2629 -12.5126 1.1487 36 1 1.0277 -11.6470 1.3765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732577180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:02 Heat of formation + Delta-G solvation = -86.607021 kcal Electronic energy + Delta-G solvation = -24689.262680 eV Core-core repulsion = 20718.806776 eV Total energy + Delta-G solvation = -3970.455904 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.53517 -41.56394 -40.11413 -39.90021 -37.59218 -36.13036 -36.04957 -33.62786 -33.44146 -31.95945 -30.67186 -29.74235 -26.92072 -25.74432 -24.49644 -23.57291 -22.77491 -21.73308 -21.47682 -20.10020 -19.72683 -18.61417 -18.16087 -18.00341 -17.61199 -17.53090 -17.04617 -16.61629 -16.17934 -15.92724 -15.75699 -15.73474 -15.29034 -14.76937 -14.59648 -14.43517 -14.03606 -13.75372 -13.71032 -13.57245 -12.95681 -12.66146 -12.49881 -12.48203 -12.15602 -12.13119 -12.06663 -11.92836 -11.87981 -11.60103 -10.67876 -10.55214 -10.13767 -9.93041 -9.56042 -8.53921 -6.04737 -0.67751 0.31899 0.43245 0.79449 1.05551 1.34586 1.41291 1.48442 1.56892 1.79307 1.85169 2.27862 2.73126 2.83046 3.11106 3.13710 3.28262 3.58761 3.88991 3.91794 3.98913 4.10225 4.11930 4.18549 4.24860 4.28211 4.47700 4.58778 4.85016 4.94133 5.03792 5.10168 5.35371 5.37061 5.43830 5.51501 5.86436 5.93427 6.19011 6.44509 6.56106 7.01001 7.36877 7.91361 8.63192 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.002720 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.821731 B =10292.035437 C =11452.529888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.339 4.339 8 H 0.082 0.918 9 N -0.555 5.555 10 C 0.435 3.565 11 O -0.618 6.618 12 C 0.071 3.929 13 O -0.331 6.331 14 C 0.545 3.455 15 O -0.500 6.500 16 C -0.075 4.075 17 N -0.492 5.492 18 C 0.211 3.789 19 O -0.181 6.181 20 C 0.109 3.891 21 C -0.063 4.063 22 C -0.070 4.070 23 C -0.129 4.129 24 C -0.093 4.093 25 C -0.124 4.124 26 C -0.089 4.089 27 H 0.282 0.718 28 H 0.401 0.599 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.316 0.684 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 -26.826 -0.548 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.468 4.468 8 H 0.100 0.900 9 N -0.193 5.193 10 C 0.222 3.778 11 O -0.505 6.505 12 C -0.006 4.006 13 O -0.246 6.246 14 C 0.389 3.611 15 O -0.389 6.389 16 C -0.192 4.192 17 N -0.218 5.218 18 C -0.017 4.017 19 O -0.067 6.067 20 C 0.051 3.949 21 C -0.064 4.064 22 C -0.088 4.088 23 C -0.146 4.146 24 C -0.110 4.110 25 C -0.142 4.142 26 C -0.107 4.107 27 H 0.091 0.909 28 H 0.236 0.764 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.330 0.670 32 H 0.127 0.873 33 H 0.164 0.836 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.394 -26.123 -0.481 26.237 hybrid contribution -0.255 0.793 -0.085 0.837 sum -2.649 -25.330 -0.566 25.475 Atomic orbital electron populations 1.69670 1.06907 1.29795 1.49022 1.26130 0.96618 1.02537 0.95550 0.84853 0.77871 0.76294 0.78862 1.19349 1.19185 1.19678 1.19717 0.92912 0.83384 1.50820 0.89958 1.41704 1.09541 1.04028 1.63995 1.20065 0.88055 0.85386 0.84308 1.90545 1.15601 1.87658 1.56672 1.22624 0.90025 0.82187 1.05738 1.86715 1.40265 1.14384 1.83214 1.19673 0.86100 0.82360 0.72947 1.90879 1.14658 1.86587 1.46774 1.20647 0.90710 0.91197 1.16671 1.70818 1.08213 1.25022 1.17787 1.29410 0.95562 0.80555 0.96202 1.84561 1.14505 1.39116 1.68529 1.21920 0.87403 0.87568 0.97972 1.17679 0.86629 1.01029 1.01068 1.21134 0.94438 0.97255 0.96002 1.21349 0.94772 0.97591 1.00932 1.21782 1.01012 0.94740 0.93487 1.21460 0.92688 1.00906 0.99146 1.21475 0.97653 0.93987 0.97610 0.90874 0.76450 0.86968 0.87202 0.66996 0.87268 0.83595 0.82415 0.82187 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.13 13.05 21.66 0.28 -48.85 16 2 C -0.01 -0.40 5.50 84.92 0.47 0.06 16 3 Si 1.00 42.83 29.55 68.60 2.03 44.85 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.34 -19.60 9.68 84.04 0.81 -18.78 16 8 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 9 N -0.56 -29.48 5.29 -306.98 -1.62 -31.11 16 10 C 0.44 22.56 7.86 87.65 0.69 23.25 16 11 O -0.62 -37.60 16.08 15.72 0.25 -37.34 16 12 C 0.07 2.90 5.96 71.23 0.42 3.33 16 13 O -0.33 -14.32 9.77 -51.15 -0.50 -14.81 16 14 C 0.54 20.25 7.90 70.11 0.55 20.80 16 15 O -0.50 -17.99 13.63 19.58 0.27 -17.72 16 16 C -0.07 -2.42 7.09 40.89 0.29 -2.13 16 17 N -0.49 -14.91 11.34 -303.80 -3.44 -18.36 16 18 C 0.21 3.76 13.16 130.53 1.72 5.48 16 19 O -0.18 -3.56 10.74 -4.47 -0.05 -3.61 16 20 C 0.11 2.79 6.85 24.83 0.17 2.96 16 21 C -0.06 -1.47 5.27 -20.11 -0.11 -1.58 16 22 C -0.07 -1.62 7.73 22.55 0.17 -1.45 16 23 C -0.13 -2.26 10.03 22.23 0.22 -2.04 16 24 C -0.09 -1.23 10.04 22.34 0.22 -1.00 16 25 C -0.12 -1.63 10.03 22.23 0.22 -1.41 16 26 C -0.09 -1.55 9.79 22.55 0.22 -1.33 16 27 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 29 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.11 3.97 8.14 -2.38 -0.02 3.95 16 31 H 0.32 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.11 2.80 7.61 -2.91 -0.02 2.77 16 33 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -80.63 335.18 3.72 -76.91 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.42 Total: 23.88 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 6.08 Total: 26.15 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -4.78 Total: -98.31 kcal Atomic # 8 Polarization: -73.46 SS G_CDS: -0.03 Total: -73.49 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -80.63 3.72 -76.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732577180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.692 kcal (2) G-P(sol) polarization free energy of solvation -80.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds