Wall clock time and date at job start Tue Mar 31 2020 11:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46627 * 269.99424 * 3 2 1 5 5 H 1.48502 * 109.47260 * 29.99404 * 3 2 1 6 6 H 1.48503 * 109.47320 * 149.99957 * 3 2 1 7 7 C 1.38799 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99659 * 180.02562 * 7 2 1 9 9 S 1.76191 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47338 * 180.02562 * 10 9 7 12 12 O 1.20819 * 120.00227 * 359.97438 * 11 10 9 13 13 O 1.34236 * 119.99712 * 180.02562 * 11 10 9 14 14 C 1.45200 * 116.99504 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47045 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47112 * 179.97438 * 15 14 13 17 17 C 1.39370 * 119.51084 * 270.29002 * 16 15 14 18 18 C 1.36098 * 120.99091 * 180.28202 * 17 16 15 19 19 C 1.40536 * 119.65063 * 359.71066 * 18 17 16 20 20 C 1.40540 * 121.28217 * 180.02562 * 19 18 17 21 21 C 1.36091 * 119.65665 * 180.02562 * 20 19 18 22 22 C 1.39376 * 120.98533 * 359.95297 * 21 20 19 23 23 C 1.36089 * 120.99181 * 0.02562 * 22 21 20 24 24 C 1.40540 * 119.65387 * 0.02562 * 23 22 21 25 25 C 1.36095 * 119.49925 * 90.00304 * 16 15 14 26 26 H 0.97000 * 120.00065 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47040 * 59.99445 * 10 9 7 28 28 H 1.09008 * 109.47031 * 300.00572 * 10 9 7 29 29 H 1.08993 * 109.47604 * 59.99659 * 14 13 11 30 30 H 1.09000 * 109.47518 * 299.99822 * 14 13 11 31 31 H 1.09006 * 109.46637 * 59.99803 * 15 14 13 32 32 H 1.09000 * 109.47090 * 300.00418 * 15 14 13 33 33 H 1.07998 * 119.50525 * 359.97438 * 17 16 15 34 34 H 1.07997 * 120.17524 * 179.73800 * 18 17 16 35 35 H 1.08002 * 120.17303 * 0.02639 * 20 19 18 36 36 H 1.07998 * 119.50902 * 179.97438 * 21 20 19 37 37 H 1.08007 * 119.50474 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.17251 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.17715 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3026 -0.0001 12 8 0.7957 -5.5015 0.0000 13 8 2.8408 -6.3388 0.0003 14 6 2.2611 -7.6701 0.0002 15 6 3.3801 -8.7136 0.0001 16 6 2.7785 -10.0953 0.0007 17 6 2.4993 -10.7220 1.2138 18 6 1.9612 -11.9716 1.2495 19 6 1.6762 -12.6404 0.0468 20 6 1.1200 -13.9310 0.0436 21 6 0.8577 -14.5484 -1.1405 22 6 1.1315 -13.9193 -2.3538 23 6 1.6696 -12.6698 -2.3895 24 6 1.9552 -12.0011 -1.1868 25 6 2.5106 -10.7100 -1.1836 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7313 0.8905 28 1 3.1246 -3.7312 -0.8895 29 1 1.6453 -7.7982 -0.8898 30 1 1.6447 -7.7981 0.8900 31 1 3.9963 -8.5856 0.8901 32 1 3.9963 -8.5855 -0.8899 33 1 2.7176 -10.2103 2.1394 34 1 1.7540 -12.4465 2.1970 35 1 0.9019 -14.4304 0.9761 36 1 0.4307 -15.5403 -1.1402 37 1 0.9134 -14.4312 -3.2795 38 1 1.8761 -12.1947 -3.3371 39 1 2.7284 -10.2105 -2.1161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733859510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:14 Heat of formation + Delta-G solvation = -56.529082 kcal Electronic energy + Delta-G solvation = -21510.381192 eV Core-core repulsion = 18087.522779 eV Total energy + Delta-G solvation = -3422.858412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72582 -39.97656 -37.44101 -36.12699 -33.52657 -32.48816 -32.45587 -30.12132 -29.69615 -28.36696 -25.57135 -24.30742 -23.54394 -22.25046 -21.65483 -20.96172 -17.97124 -17.62513 -17.28011 -17.12751 -16.45299 -16.14566 -15.70339 -15.03932 -14.84910 -14.69417 -14.26498 -14.13568 -13.94080 -13.63450 -13.59472 -13.13533 -12.96823 -12.66008 -12.46852 -12.12964 -11.93297 -11.60283 -11.33625 -11.25184 -11.11767 -11.10055 -11.06917 -10.81646 -10.39082 -10.25293 -10.00376 -9.90373 -9.11760 -8.83397 -8.35940 -8.18599 -6.60578 -6.27458 -4.00176 0.22809 0.68146 1.75252 2.53668 2.67146 2.76705 3.20409 3.23988 3.28558 3.51783 3.81673 4.14593 4.25902 4.45901 4.53267 4.61071 4.69758 4.85612 4.89998 4.91051 5.06242 5.07941 5.08375 5.12676 5.21130 5.32742 5.45275 5.51792 5.58177 5.65036 5.77913 5.78829 5.82889 5.92603 5.95464 6.08068 6.15531 6.26561 6.33072 6.52815 6.68970 6.71045 7.55195 8.17760 8.30177 9.17969 10.80035 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.038563 B = 0.001864 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.907659 B =15020.300382 C =15169.637295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.076 0.924 9 S -0.059 6.059 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.488 6.488 13 O -0.362 6.362 14 C 0.072 3.928 15 C -0.081 4.081 16 C -0.077 4.077 17 C -0.106 4.106 18 C -0.106 4.106 19 C -0.053 4.053 20 C -0.106 4.106 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.104 4.104 24 C -0.050 4.050 25 C -0.099 4.099 26 H 0.269 0.731 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.430 -28.137 -1.061 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.684 4.684 8 H 0.094 0.906 9 S 0.167 5.833 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.373 6.373 13 O -0.281 6.281 14 C -0.003 4.003 15 C -0.118 4.118 16 C -0.077 4.077 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.053 4.053 20 C -0.124 4.124 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.122 4.122 24 C -0.050 4.050 25 C -0.117 4.117 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.775 -28.320 -1.056 28.740 hybrid contribution 1.713 1.141 -0.009 2.058 sum 6.488 -27.180 -1.064 27.963 Atomic orbital electron populations 1.70011 1.05990 1.27633 1.46593 1.25008 0.95070 0.99123 0.94348 0.86117 0.79403 0.81274 0.78418 1.20194 1.20708 1.19584 1.22843 0.95031 0.91161 1.59374 0.90570 1.85427 1.04406 0.96582 1.96883 1.23299 1.06945 0.90927 1.06475 1.23296 0.85190 0.87076 0.72415 1.90671 1.16960 1.85654 1.44019 1.86482 1.41376 1.15315 1.84893 1.22922 0.95565 0.78810 1.02996 1.20553 0.97260 0.89167 1.04835 1.19381 0.99389 0.95607 0.93290 1.20830 0.98720 0.95179 0.97667 1.21022 0.99143 0.95106 0.97105 1.18129 0.99479 0.94724 0.93004 1.21042 0.98868 0.93987 0.98546 1.20862 1.00182 1.00131 0.92497 1.20865 0.99324 0.95420 0.98104 1.21068 0.98849 0.95155 0.97145 1.18087 0.99402 0.94511 0.93027 1.20982 0.98714 0.93853 0.98143 0.92069 0.87899 0.87914 0.91155 0.91115 0.89557 0.89609 0.85575 0.85387 0.85606 0.86031 0.85979 0.85473 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.80 13.22 55.49 0.73 -25.06 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 8 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.59 20.58 -107.50 -2.21 -3.80 16 10 C -0.13 -2.63 6.27 36.00 0.23 -2.40 16 11 C 0.48 9.28 7.97 36.00 0.29 9.56 16 12 O -0.49 -10.87 15.61 -18.74 -0.29 -11.17 16 13 O -0.36 -5.74 10.22 -39.27 -0.40 -6.14 16 14 C 0.07 0.92 5.45 37.16 0.20 1.13 16 15 C -0.08 -0.78 5.69 -27.88 -0.16 -0.94 16 16 C -0.08 -0.74 5.10 -104.97 -0.54 -1.27 16 17 C -0.11 -0.96 9.59 -39.93 -0.38 -1.34 16 18 C -0.11 -0.92 9.77 -39.48 -0.39 -1.31 16 19 C -0.05 -0.51 5.74 -106.84 -0.61 -1.13 16 20 C -0.11 -0.85 9.77 -39.49 -0.39 -1.23 16 21 C -0.12 -0.86 9.95 -39.93 -0.40 -1.26 16 22 C -0.12 -0.89 9.95 -39.93 -0.40 -1.29 16 23 C -0.10 -0.88 9.77 -39.49 -0.39 -1.27 16 24 C -0.05 -0.50 5.74 -106.83 -0.61 -1.11 16 25 C -0.10 -0.95 9.37 -39.48 -0.37 -1.32 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.10 1.94 8.14 -51.91 -0.42 1.52 16 28 H 0.10 1.94 8.14 -51.91 -0.42 1.51 16 29 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 30 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 31 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -33.38 356.84 -10.56 -43.94 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.03 Total: -1.32 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -3.71 Total: -17.95 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.73 Total: -25.06 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.69 Total: -17.31 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.38 -10.56 -43.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733859510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.586 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds