Wall clock time and date at job start Tue Mar 31 2020 11:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46627 * 269.99424 * 3 2 1 5 5 H 1.48502 * 109.47260 * 29.99404 * 3 2 1 6 6 H 1.48503 * 109.47320 * 149.99957 * 3 2 1 7 7 C 1.38799 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99659 * 180.02562 * 7 2 1 9 9 S 1.76191 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47338 * 180.02562 * 10 9 7 12 12 O 1.20819 * 120.00227 * 359.97438 * 11 10 9 13 13 O 1.34236 * 119.99712 * 180.02562 * 11 10 9 14 14 C 1.45200 * 116.99504 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47045 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47112 * 179.97438 * 15 14 13 17 17 C 1.39370 * 119.51084 * 270.29002 * 16 15 14 18 18 C 1.36098 * 120.99091 * 180.28202 * 17 16 15 19 19 C 1.40536 * 119.65063 * 359.71066 * 18 17 16 20 20 C 1.40540 * 121.28217 * 180.02562 * 19 18 17 21 21 C 1.36091 * 119.65665 * 180.02562 * 20 19 18 22 22 C 1.39376 * 120.98533 * 359.95297 * 21 20 19 23 23 C 1.36089 * 120.99181 * 0.02562 * 22 21 20 24 24 C 1.40540 * 119.65387 * 0.02562 * 23 22 21 25 25 C 1.36095 * 119.49925 * 90.00304 * 16 15 14 26 26 H 0.97000 * 120.00065 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47040 * 59.99445 * 10 9 7 28 28 H 1.09008 * 109.47031 * 300.00572 * 10 9 7 29 29 H 1.08993 * 109.47604 * 59.99659 * 14 13 11 30 30 H 1.09000 * 109.47518 * 299.99822 * 14 13 11 31 31 H 1.09006 * 109.46637 * 59.99803 * 15 14 13 32 32 H 1.09000 * 109.47090 * 300.00418 * 15 14 13 33 33 H 1.07998 * 119.50525 * 359.97438 * 17 16 15 34 34 H 1.07997 * 120.17524 * 179.73800 * 18 17 16 35 35 H 1.08002 * 120.17303 * 0.02639 * 20 19 18 36 36 H 1.07998 * 119.50902 * 179.97438 * 21 20 19 37 37 H 1.08007 * 119.50474 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.17251 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.17715 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3026 -0.0001 12 8 0.7957 -5.5015 0.0000 13 8 2.8408 -6.3388 0.0003 14 6 2.2611 -7.6701 0.0002 15 6 3.3801 -8.7136 0.0001 16 6 2.7785 -10.0953 0.0007 17 6 2.4993 -10.7220 1.2138 18 6 1.9612 -11.9716 1.2495 19 6 1.6762 -12.6404 0.0468 20 6 1.1200 -13.9310 0.0436 21 6 0.8577 -14.5484 -1.1405 22 6 1.1315 -13.9193 -2.3538 23 6 1.6696 -12.6698 -2.3895 24 6 1.9552 -12.0011 -1.1868 25 6 2.5106 -10.7100 -1.1836 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7313 0.8905 28 1 3.1246 -3.7312 -0.8895 29 1 1.6453 -7.7982 -0.8898 30 1 1.6447 -7.7981 0.8900 31 1 3.9963 -8.5856 0.8901 32 1 3.9963 -8.5855 -0.8899 33 1 2.7176 -10.2103 2.1394 34 1 1.7540 -12.4465 2.1970 35 1 0.9019 -14.4304 0.9761 36 1 0.4307 -15.5403 -1.1402 37 1 0.9134 -14.4312 -3.2795 38 1 1.8761 -12.1947 -3.3371 39 1 2.7284 -10.2105 -2.1161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733859510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:13 Heat of formation + Delta-G solvation = -72.659085 kcal Electronic energy + Delta-G solvation = -21511.080641 eV Core-core repulsion = 18087.522779 eV Total energy + Delta-G solvation = -3423.557862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56566 -41.23482 -38.25425 -37.40286 -34.61028 -34.26573 -33.18007 -31.45420 -30.50162 -29.24629 -27.70521 -25.19459 -24.19091 -22.86830 -22.50154 -22.32603 -19.90952 -18.73543 -18.22152 -17.99205 -17.60847 -17.21550 -16.89557 -16.88217 -16.04706 -15.69565 -15.51042 -15.09159 -14.82793 -14.59839 -14.41417 -14.26936 -14.22132 -13.80023 -13.56978 -13.21873 -13.00651 -12.90940 -12.86443 -12.66557 -12.57816 -12.04452 -11.91492 -11.78139 -11.75231 -11.57301 -11.54353 -11.15737 -10.89732 -10.37779 -9.49063 -8.81566 -8.74019 -8.37272 -6.17263 -0.40147 0.02527 1.00331 1.11579 1.12940 1.41452 1.43720 1.55666 1.84080 2.09112 2.24143 2.97809 3.14959 3.26705 3.60630 3.68842 3.86775 3.91390 3.98544 4.04434 4.09151 4.17789 4.21177 4.29787 4.37504 4.43058 4.44706 4.45744 4.58488 4.77883 4.86069 4.92236 5.02762 5.17398 5.29840 5.31728 5.35106 5.41448 5.55191 5.63432 5.66564 5.91651 6.09603 6.18391 6.67598 7.04408 8.71981 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.038563 B = 0.001864 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.907659 B =15020.300382 C =15169.637295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.087 0.913 9 S -0.141 6.141 10 C -0.108 4.108 11 C 0.488 3.512 12 O -0.523 6.523 13 O -0.349 6.349 14 C 0.068 3.932 15 C -0.068 4.068 16 C -0.088 4.088 17 C -0.119 4.119 18 C -0.110 4.110 19 C -0.074 4.074 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.073 4.073 25 C -0.109 4.109 26 H 0.272 0.728 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 -29.077 -1.051 30.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.105 0.895 9 S 0.086 5.914 10 C -0.256 4.256 11 C 0.330 3.670 12 O -0.411 6.411 13 O -0.267 6.267 14 C -0.006 4.006 15 C -0.105 4.105 16 C -0.088 4.088 17 C -0.137 4.137 18 C -0.128 4.128 19 C -0.074 4.074 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.073 4.073 25 C -0.127 4.127 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.496 -29.289 -1.047 30.019 hybrid contribution 1.183 1.203 -0.038 1.688 sum 7.679 -28.086 -1.085 29.137 Atomic orbital electron populations 1.70167 1.07957 1.28784 1.47741 1.26135 0.95992 1.03328 0.93553 0.84920 0.78198 0.75831 0.78832 1.19279 1.20290 1.18139 1.23196 0.95545 0.91493 1.59277 0.89486 1.85560 1.09445 0.99222 1.97181 1.23098 1.04182 0.89942 1.08428 1.23017 0.84764 0.87507 0.71664 1.90667 1.18473 1.86160 1.45825 1.86456 1.40338 1.15847 1.84013 1.23209 0.96991 0.77739 1.02622 1.20487 0.96126 0.87970 1.05952 1.19422 1.00118 0.95539 0.93687 1.21049 0.99035 0.95605 0.98021 1.21309 0.98577 0.95070 0.97831 1.18460 1.00006 0.95680 0.93261 1.21345 0.98663 0.93580 0.99861 1.21233 0.99478 1.01129 0.92186 1.21220 0.98338 0.95136 0.99295 1.21314 0.99406 0.95830 0.97304 1.18369 1.00054 0.94935 0.93903 1.21179 0.98770 0.94121 0.98627 0.91863 0.85842 0.85861 0.91700 0.91483 0.88357 0.88604 0.84295 0.83362 0.83641 0.83590 0.83780 0.84271 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.99 13.22 21.65 0.29 -54.70 16 2 C 0.01 0.84 5.49 84.86 0.47 1.30 16 3 Si 1.00 42.89 29.55 68.60 2.03 44.92 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.55 -30.68 9.50 67.95 0.65 -30.03 16 8 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.14 -7.68 20.58 -56.49 -1.16 -8.84 16 10 C -0.11 -4.32 6.27 71.23 0.45 -3.87 16 11 C 0.49 18.64 7.97 71.23 0.57 19.21 16 12 O -0.52 -23.65 15.61 21.99 0.34 -23.30 16 13 O -0.35 -10.60 10.22 -51.48 -0.53 -11.12 16 14 C 0.07 1.72 5.45 71.98 0.39 2.11 16 15 C -0.07 -1.23 5.69 29.85 0.17 -1.06 16 16 C -0.09 -1.63 5.10 -20.09 -0.10 -1.74 16 17 C -0.12 -2.07 9.59 22.04 0.21 -1.86 16 18 C -0.11 -1.83 9.77 22.33 0.22 -1.61 16 19 C -0.07 -1.37 5.74 -21.30 -0.12 -1.49 16 20 C -0.12 -1.70 9.77 22.33 0.22 -1.48 16 21 C -0.12 -1.56 9.95 22.04 0.22 -1.34 16 22 C -0.12 -1.64 9.95 22.04 0.22 -1.42 16 23 C -0.12 -1.96 9.77 22.33 0.22 -1.74 16 24 C -0.07 -1.42 5.74 -21.29 -0.12 -1.54 16 25 C -0.11 -2.07 9.37 22.33 0.21 -1.86 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 28 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 29 H 0.06 1.71 8.13 -2.39 -0.02 1.70 16 30 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 31 H 0.10 1.54 8.08 -2.38 -0.02 1.52 16 32 H 0.10 1.53 8.07 -2.39 -0.02 1.52 16 33 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 37 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -72.90 356.84 5.87 -67.03 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.05 Total: 14.45 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 3.86 Total: -28.42 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.29 Total: -54.70 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.18 Total: -34.42 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.16 Total: -8.84 kcal Total: -72.90 5.87 -67.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733859510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.633 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds