Wall clock time and date at job start Tue Mar 31 2020 11:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.37876 * 120.00059 * 236.45248 * 3 2 1 5 5 C 1.46406 * 119.99695 * 352.01653 * 4 3 2 6 6 C 1.40263 * 120.13620 * 326.33955 * 5 4 3 7 7 C 1.36591 * 119.86070 * 179.73930 * 6 5 4 8 8 C 1.39122 * 120.13839 * 0.53815 * 7 6 5 9 9 O 1.35671 * 119.86452 * 179.73684 * 8 7 6 10 10 C 1.39118 * 120.27375 * 359.71776 * 8 7 6 11 11 C 1.36598 * 120.13610 * 0.02562 * 10 8 7 12 12 C 1.46967 * 120.00243 * 56.45627 * 3 2 1 13 13 O 1.21570 * 119.99776 * 179.97438 * 12 3 2 14 14 O 1.34829 * 120.00152 * 359.97438 * 12 3 2 15 15 C 1.45192 * 117.00292 * 179.97438 * 14 12 3 16 16 C 1.50699 * 109.47251 * 179.97438 * 15 14 12 17 17 O 1.21288 * 120.00011 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00090 * 179.97438 * 16 15 14 19 19 C 1.37089 * 119.99973 * 180.02562 * 18 16 15 20 20 H 1.08005 * 120.00373 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00311 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99637 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00342 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47219 * 90.00319 * 23 21 19 25 25 H 1.48506 * 109.47076 * 209.99947 * 23 21 19 26 26 H 1.48500 * 109.47152 * 329.99515 * 23 21 19 27 27 H 1.08000 * 120.00193 * 172.29652 * 4 3 2 28 28 H 1.08008 * 120.06858 * 359.97438 * 6 5 4 29 29 H 1.07998 * 119.93344 * 180.25869 * 7 6 5 30 30 H 0.96697 * 114.00490 * 269.97761 * 9 8 7 31 31 H 1.08002 * 119.93500 * 180.02562 * 10 8 7 32 32 H 1.08001 * 120.06796 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.47460 * 300.00249 * 15 14 12 34 34 H 1.09004 * 109.46784 * 60.00205 * 15 14 12 35 35 H 0.96998 * 120.00050 * 0.02562 * 18 16 15 36 36 H 0.97001 * 120.00172 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2570 0.6608 0.9951 5 6 2.5352 1.5045 1.9494 6 6 1.3986 2.2172 1.5399 7 6 0.7264 2.9985 2.4362 8 6 1.1733 3.0970 3.7500 9 8 0.5044 3.8789 4.6343 10 6 2.3031 2.3969 4.1609 11 6 2.9809 1.6082 3.2753 12 6 3.3032 -0.7023 -1.0608 13 8 4.5189 -0.7013 -1.0610 14 8 2.6294 -1.3483 -2.0337 15 6 3.4205 -2.0203 -3.0490 16 6 2.5028 -2.6822 -4.0443 17 8 1.3004 -2.5957 -3.9114 18 7 3.0183 -3.3695 -5.0828 19 6 2.1835 -3.9712 -5.9886 20 1 1.1127 -3.8949 -5.8698 21 6 2.7149 -4.6803 -7.0589 22 7 4.0177 -4.7744 -7.2026 23 14 1.5774 -5.4995 -8.2935 24 1 1.2750 -4.5497 -9.3942 25 1 2.2383 -6.7076 -8.8497 26 1 0.3147 -5.8929 -7.6181 27 1 4.3298 0.5591 1.0680 28 1 1.0535 2.1453 0.5190 29 1 -0.1513 3.5444 2.1233 30 1 0.8180 4.7930 4.6668 31 1 2.6450 2.4771 5.1823 32 1 3.8580 1.0654 3.5953 33 1 4.0483 -1.2916 -3.5617 34 1 4.0503 -2.7751 -2.5781 35 1 3.9800 -3.4384 -5.1893 36 1 4.3888 -5.2691 -7.9500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754544281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:32 Heat of formation + Delta-G solvation = -107.641969 kcal Electronic energy + Delta-G solvation = -23800.675399 eV Core-core repulsion = 19829.307352 eV Total energy + Delta-G solvation = -3971.368048 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70897 -40.91495 -40.05833 -38.66054 -37.57188 -37.42990 -36.05003 -34.68451 -33.42773 -32.31468 -30.94401 -29.74449 -26.79044 -25.72287 -24.04190 -22.95904 -22.56305 -21.45006 -20.09084 -20.01124 -19.50441 -18.08092 -17.78290 -17.74006 -17.22060 -16.86111 -16.54530 -16.33295 -15.91132 -15.83966 -15.76334 -15.18618 -14.91059 -14.71014 -14.47226 -14.20787 -13.89764 -13.72258 -13.64394 -13.57113 -13.44246 -12.96623 -12.95452 -12.94087 -12.48965 -12.13629 -11.87552 -11.87136 -11.59311 -11.51086 -11.08852 -10.53079 -10.19560 -10.12310 -9.39879 -8.53320 -6.03593 -1.07475 0.31448 0.38213 1.19467 1.20361 1.34827 1.42005 1.54157 1.66160 1.86716 2.26000 2.28995 2.59379 2.74135 2.98977 3.12200 3.18778 3.41104 3.68996 3.80860 3.86580 4.08316 4.20102 4.21664 4.23765 4.25775 4.53452 4.66195 4.74428 4.93300 5.15834 5.21774 5.29306 5.34056 5.36122 5.68660 5.88140 6.30093 6.45428 6.56644 6.77853 7.02679 7.39378 7.94403 8.63524 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.037350 B = 0.002111 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.477536 B =13259.562799 C =13886.788487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.269 3.731 3 C -0.135 4.135 4 C 0.137 3.863 5 C -0.138 4.138 6 C -0.078 4.078 7 C -0.168 4.168 8 C 0.138 3.862 9 O -0.509 6.509 10 C -0.155 4.155 11 C -0.040 4.040 12 C 0.524 3.476 13 O -0.506 6.506 14 O -0.350 6.350 15 C 0.074 3.926 16 C 0.432 3.568 17 O -0.624 6.624 18 N -0.556 5.556 19 C -0.339 4.339 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.912 5.912 23 Si 0.996 3.004 24 H -0.269 1.269 25 H -0.267 1.267 26 H -0.275 1.275 27 H 0.207 0.793 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.418 0.582 31 H 0.162 0.838 32 H 0.179 0.821 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.402 0.598 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 17.250 23.674 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.044 4.044 3 C -0.140 4.140 4 C 0.115 3.885 5 C -0.138 4.138 6 C -0.097 4.097 7 C -0.186 4.186 8 C 0.093 3.907 9 O -0.324 6.324 10 C -0.173 4.173 11 C -0.058 4.058 12 C 0.369 3.631 13 O -0.397 6.397 14 O -0.265 6.265 15 C -0.003 4.003 16 C 0.219 3.781 17 O -0.511 6.511 18 N -0.193 5.193 19 C -0.468 4.468 20 H 0.098 0.902 21 C -0.208 4.208 22 N -0.551 5.551 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.191 1.191 26 H -0.199 1.199 27 H 0.223 0.777 28 H 0.132 0.868 29 H 0.151 0.849 30 H 0.279 0.721 31 H 0.180 0.820 32 H 0.196 0.804 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.237 0.763 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.875 16.675 23.663 29.206 hybrid contribution 0.245 -0.118 -1.308 1.336 sum 4.121 16.557 22.355 28.122 Atomic orbital electron populations 1.81250 1.13145 1.09974 1.08381 1.25531 0.92856 0.92767 0.93285 1.17174 0.83913 1.11804 1.01137 1.23604 1.01850 0.80329 0.82747 1.19117 0.97606 1.01488 0.95581 1.21290 0.93226 0.95262 0.99913 1.21255 1.01795 1.02300 0.93263 1.19005 0.90727 0.93522 0.87447 1.84695 1.60738 1.27093 1.59911 1.21496 0.94727 0.98879 1.02243 1.21451 0.99472 0.94909 0.89949 1.20591 0.85818 0.76040 0.80612 1.90874 1.13535 1.59660 1.75615 1.86659 1.41344 1.62593 1.35896 1.22610 0.91840 0.98124 0.87742 1.20263 0.88989 0.84303 0.84564 1.90552 1.17476 1.65850 1.77248 1.41705 1.09909 1.45602 1.22101 1.19670 0.91490 1.30665 1.05009 0.90234 1.26083 0.98000 0.97305 0.99409 1.69658 1.11473 1.41761 1.32257 0.84885 0.77652 0.77959 0.77572 1.19449 1.19135 1.19938 0.77667 0.86777 0.84933 0.72120 0.82020 0.80414 0.86538 0.86504 0.76312 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.82 18.21 19.00 0.35 -15.47 16 2 C 0.27 8.01 11.38 88.33 1.01 9.02 16 3 C -0.14 -3.08 5.81 -19.83 -0.12 -3.20 16 4 C 0.14 1.75 9.43 24.31 0.23 1.98 16 5 C -0.14 -1.77 5.51 -20.17 -0.11 -1.88 16 6 C -0.08 -1.37 8.25 22.38 0.18 -1.18 16 7 C -0.17 -2.65 9.92 22.10 0.22 -2.43 16 8 C 0.14 1.71 6.72 22.69 0.15 1.86 16 9 O -0.51 -5.29 13.48 -89.89 -1.21 -6.50 16 10 C -0.16 -1.29 9.92 22.10 0.22 -1.07 16 11 C -0.04 -0.29 9.75 22.38 0.22 -0.07 16 12 C 0.52 14.98 7.87 70.11 0.55 15.53 16 13 O -0.51 -13.99 16.10 19.61 0.32 -13.68 16 14 O -0.35 -13.13 9.29 -51.02 -0.47 -13.61 16 15 C 0.07 2.71 5.96 71.24 0.42 3.13 16 16 C 0.43 21.48 7.86 87.66 0.69 22.17 16 17 O -0.62 -37.17 16.08 15.74 0.25 -36.91 16 18 N -0.56 -28.67 5.29 -306.99 -1.62 -30.29 16 19 C -0.34 -19.35 9.68 84.04 0.81 -18.54 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 22 N -0.91 -48.24 13.05 21.66 0.28 -47.96 16 23 Si 1.00 42.68 29.55 68.60 2.03 44.70 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 H 0.21 1.15 7.61 -2.91 -0.02 1.13 16 28 H 0.11 2.40 5.95 -2.91 -0.02 2.38 16 29 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.42 0.00 9.06 -74.06 -0.67 -0.67 16 31 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 32 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 33 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 34 H 0.12 3.66 8.14 -2.38 -0.02 3.64 16 35 H 0.40 19.20 7.90 -92.71 -0.73 18.46 16 36 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -81.65 342.38 4.64 -77.01 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.22 Total: 17.30 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 4.95 Total: 25.42 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -0.99 Total: -93.73 kcal Atomic # 8 Polarization: -69.58 SS G_CDS: -1.12 Total: -70.69 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -81.65 4.64 -77.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754544281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.637 kcal (2) G-P(sol) polarization free energy of solvation -81.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds