Wall clock time and date at job start Tue Mar 31 2020 11:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86807 * 119.99622 * 2 1 4 4 H 1.48498 * 109.47016 * 240.00303 * 3 2 1 5 5 H 1.48501 * 109.46905 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47307 * 120.00198 * 3 2 1 7 7 C 1.38943 * 120.00737 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00789 * 170.53969 * 7 2 1 9 9 N 1.37099 * 119.99534 * 350.53780 * 7 2 1 10 10 C 1.34783 * 120.00427 * 314.48366 * 9 7 2 11 11 O 1.21297 * 119.99489 * 3.25823 * 10 9 7 12 12 C 1.50695 * 120.00207 * 183.26021 * 10 9 7 13 13 F 1.39900 * 109.47247 * 316.63984 * 12 10 9 14 14 F 1.39900 * 109.47181 * 76.64346 * 12 10 9 15 15 C 1.50702 * 109.47042 * 196.64158 * 12 10 9 16 16 N 1.29027 * 124.91552 * 299.69315 * 15 12 10 17 17 C 1.31784 * 117.12549 * 179.80955 * 16 15 12 18 18 C 1.33641 * 114.49718 * 0.47967 * 17 16 15 19 19 S 1.70976 * 124.91632 * 120.00034 * 15 12 10 20 20 C 1.46503 * 119.99953 * 134.48288 * 9 7 2 21 21 C 1.54964 * 110.92142 * 301.00978 * 20 9 7 22 22 C 1.54264 * 104.16049 * 156.29819 * 21 20 9 23 23 C 1.53880 * 106.63932 * 336.44422 * 22 21 20 24 24 C 1.54269 * 106.59721 * 359.97438 * 23 22 21 25 25 H 0.97000 * 120.00533 * 359.97438 * 1 2 3 26 26 H 1.07998 * 122.74936 * 180.22580 * 17 16 15 27 27 H 1.08005 * 126.03525 * 179.71271 * 18 17 16 28 28 H 1.09004 * 110.67211 * 177.70378 * 20 9 7 29 29 H 1.08990 * 110.48129 * 37.63993 * 21 20 9 30 30 H 1.09004 * 110.52776 * 274.97237 * 21 20 9 31 31 H 1.08998 * 110.03197 * 217.13648 * 22 21 20 32 32 H 1.08997 * 110.03895 * 95.74759 * 22 21 20 33 33 H 1.08995 * 110.03313 * 119.26172 * 23 22 21 34 34 H 1.09002 * 110.03339 * 240.64669 * 23 22 21 35 35 H 1.08995 * 110.48429 * 142.29099 * 24 23 22 36 36 H 1.09005 * 110.48528 * 264.80067 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6966 1.2124 7 6 2.0089 -1.2032 -0.0005 8 1 3.0779 -1.2095 -0.1543 9 7 1.3375 -2.3826 0.1941 10 6 0.4224 -2.4826 1.1787 11 8 0.1502 -1.5127 1.8543 12 6 -0.2622 -3.7993 1.4401 13 9 -0.6279 -4.3845 0.2231 14 9 0.6115 -4.6517 2.1236 15 6 -1.4944 -3.5675 2.2763 16 7 -1.4985 -3.0472 3.4570 17 6 -2.6676 -2.9114 4.0497 18 6 -3.7066 -3.3505 3.3329 19 16 -3.0884 -3.9627 1.8007 20 6 1.6146 -3.5342 -0.6680 21 6 1.3373 -3.1924 -2.1539 22 6 2.2094 -4.1927 -2.9403 23 6 3.3469 -4.6221 -1.9970 24 6 3.1272 -3.8673 -0.6697 25 1 -0.4851 0.8400 0.0004 26 1 -2.7767 -2.4844 5.0356 27 1 -4.7422 -3.3336 3.6391 28 1 1.0289 -4.3987 -0.3553 29 1 1.6398 -2.1684 -2.3726 30 1 0.2830 -3.3383 -2.3893 31 1 2.6215 -3.7118 -3.8274 32 1 1.6156 -5.0603 -3.2280 33 1 3.3045 -5.6977 -1.8264 34 1 4.3110 -4.3502 -2.4268 35 1 3.3783 -4.5050 0.1778 36 1 3.7212 -2.9535 -0.6476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756704105.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:57 Heat of formation + Delta-G solvation = -54.353215 kcal Electronic energy + Delta-G solvation = -25777.152878 eV Core-core repulsion = 21832.452040 eV Total energy + Delta-G solvation = -3944.700838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.90616 -46.79316 -39.41415 -38.57984 -36.77607 -33.59154 -31.64994 -30.93264 -28.05120 -27.66982 -26.85857 -25.37770 -23.53640 -20.95637 -20.06714 -19.72578 -19.38711 -18.49535 -17.50207 -16.96595 -16.23103 -16.17630 -15.16977 -14.87197 -14.75349 -14.25844 -14.13459 -13.88648 -13.73742 -13.30955 -13.14126 -12.98737 -12.80910 -12.67029 -12.56490 -11.71493 -11.62802 -11.31571 -11.08858 -11.04760 -10.83260 -10.71799 -10.50793 -10.46995 -10.23136 -9.83603 -9.61952 -9.43932 -9.24916 -8.90483 -8.78694 -8.24787 -7.17233 -6.14981 -4.01020 0.77151 1.42113 1.85803 3.02755 3.26491 3.33385 3.35020 3.49119 3.84711 4.11511 4.43260 4.66091 4.97060 5.09135 5.21979 5.25792 5.28555 5.37409 5.55514 5.62428 5.72236 5.96549 6.08193 6.15780 6.21324 6.24490 6.30565 6.44028 6.45124 6.60491 6.89529 6.93106 7.14606 7.55237 7.92654 8.15167 8.88725 8.94380 9.47370 10.02474 10.89653 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.006964 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.032733 B = 4019.442955 C = 5458.705585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.061 3.939 3 Si 0.915 3.085 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.087 0.913 9 N -0.420 5.420 10 C 0.441 3.559 11 O -0.468 6.468 12 C 0.360 3.640 13 F -0.179 7.179 14 F -0.175 7.175 15 C 0.007 3.993 16 N -0.415 5.415 17 C 0.042 3.958 18 C -0.261 4.261 19 S 0.164 5.836 20 C 0.102 3.898 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.132 4.132 25 H 0.265 0.735 26 H 0.179 0.821 27 H 0.180 0.820 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 -9.301 -0.355 10.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.460 4.460 8 H 0.104 0.896 9 N -0.141 5.141 10 C 0.221 3.779 11 O -0.340 6.340 12 C 0.316 3.684 13 F -0.160 7.160 14 F -0.156 7.156 15 C -0.273 4.273 16 N -0.128 5.128 17 C -0.111 4.111 18 C -0.400 4.400 19 S 0.418 5.582 20 C -0.003 4.003 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.170 4.170 25 H 0.076 0.924 26 H 0.196 0.804 27 H 0.198 0.802 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.189 -8.983 -0.661 9.934 hybrid contribution 0.133 1.016 0.773 1.284 sum -4.056 -7.967 0.112 8.941 Atomic orbital electron populations 1.69887 1.06357 1.27474 1.41640 1.25351 0.95024 0.99454 0.95195 0.86215 0.79211 0.81706 0.78652 1.20081 1.21118 1.19901 1.18976 0.91730 0.82132 1.53151 0.89560 1.43072 1.36004 1.10603 1.24396 1.19598 0.86665 0.86680 0.84983 1.90648 1.61872 1.34464 1.47027 1.19954 0.83879 0.88866 0.75740 1.92885 1.91687 1.86416 1.45032 1.93044 1.70067 1.72533 1.80003 1.26898 0.98202 1.05279 0.96910 1.65955 1.28451 1.11105 1.07308 1.21855 0.85491 1.01771 1.01947 1.27252 1.04936 1.09915 0.97909 1.83854 1.00887 1.56056 1.17372 1.22692 0.95553 0.90542 0.91503 1.22518 0.98661 1.00309 0.94276 1.22079 0.96941 0.98830 0.98115 1.22045 0.98329 0.99314 0.96037 1.22645 0.97711 1.00458 0.96208 0.92440 0.80433 0.80248 0.88852 0.89791 0.92489 0.92397 0.92611 0.92544 0.92379 0.92441 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.71 11.09 55.50 0.62 -23.10 16 2 C 0.06 1.66 4.67 -17.47 -0.08 1.58 16 3 Si 0.92 21.31 29.56 -169.99 -5.03 16.28 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.33 -8.82 7.74 -14.93 -0.12 -8.94 16 8 H 0.09 2.18 6.50 -52.49 -0.34 1.84 16 9 N -0.42 -10.54 2.57 -105.58 -0.27 -10.81 16 10 C 0.44 11.59 6.49 -10.99 -0.07 11.52 16 11 O -0.47 -13.89 12.95 5.54 0.07 -13.82 16 12 C 0.36 8.02 1.75 -29.04 -0.05 7.97 16 13 F -0.18 -3.63 13.36 2.25 0.03 -3.60 16 14 F -0.18 -3.77 16.91 2.25 0.04 -3.73 16 15 C 0.01 0.14 5.97 -13.46 -0.08 0.06 16 16 N -0.41 -8.72 9.82 -11.86 -0.12 -8.84 16 17 C 0.04 0.68 11.35 -19.18 -0.22 0.46 16 18 C -0.26 -3.58 11.37 29.12 0.33 -3.25 16 19 S 0.16 2.64 22.58 -107.50 -2.43 0.21 16 20 C 0.10 2.10 2.75 -65.90 -0.18 1.92 16 21 C -0.12 -2.28 6.40 -25.03 -0.16 -2.44 16 22 C -0.12 -1.83 6.80 -25.61 -0.17 -2.00 16 23 C -0.12 -1.74 6.80 -25.61 -0.17 -1.92 16 24 C -0.13 -2.37 6.35 -25.07 -0.16 -2.52 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.18 2.26 8.06 -52.49 -0.42 1.83 16 27 H 0.18 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.09 1.88 4.49 -51.93 -0.23 1.65 16 29 H 0.08 1.79 7.28 -51.93 -0.38 1.41 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.51 6.38 -51.93 -0.33 1.18 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -32.08 316.52 -7.25 -39.34 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.80 Total: 0.87 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.14 Total: 2.43 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.23 Total: -42.75 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.07 Total: -13.82 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.07 Total: -7.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.43 Total: 0.21 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.08 -7.25 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756704105.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.017 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds