Wall clock time and date at job start Tue Mar 31 2020 10:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38489 * 120.38837 * 2 1 4 4 C 1.39297 * 118.37508 * 180.23924 * 3 2 1 5 5 N 1.39878 * 120.47756 * 179.75910 * 4 3 2 6 6 C 1.34777 * 120.00103 * 327.45149 * 5 4 3 7 7 O 1.21606 * 119.99781 * 354.80103 * 6 5 4 8 8 C 1.47594 * 120.00342 * 174.80138 * 6 5 4 9 9 C 1.40035 * 119.89991 * 180.02562 * 8 6 5 10 10 C 1.36302 * 120.10547 * 180.27908 * 9 8 6 11 11 C 1.40901 * 119.89334 * 359.51076 * 10 9 8 12 12 C 1.41090 * 120.10291 * 180.21108 * 11 10 9 13 13 H 1.08000 * 120.00017 * 204.98430 * 12 11 10 14 14 C 1.40234 * 119.99955 * 24.98779 * 12 11 10 15 15 N 1.30643 * 119.99998 * 17.26183 * 14 12 11 16 16 Si 1.86795 * 119.99850 * 197.27000 * 14 12 11 17 17 H 1.48505 * 109.47324 * 94.62493 * 16 14 12 18 18 H 1.48506 * 109.47027 * 214.61982 * 16 14 12 19 19 H 1.48501 * 109.47261 * 334.61964 * 16 14 12 20 20 C 1.40902 * 119.79615 * 0.48632 * 11 10 9 21 21 C 1.36300 * 119.89191 * 359.74680 * 20 11 10 22 22 C 1.38880 * 119.04378 * 359.48391 * 4 3 2 23 23 N 1.31818 * 120.67186 * 0.25560 * 22 4 3 24 24 C 1.31969 * 121.78573 * 0.02562 * 23 22 4 25 25 Cl 1.73591 * 119.55295 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.46875 * 270.28038 * 1 2 3 27 27 H 1.08999 * 109.46664 * 30.27808 * 1 2 3 28 28 H 1.08993 * 109.47485 * 150.27880 * 1 2 3 29 29 H 1.08003 * 120.81290 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00583 * 147.45724 * 5 4 3 31 31 H 1.08003 * 119.94855 * 359.97438 * 9 8 6 32 32 H 1.08001 * 120.05740 * 179.72321 * 10 9 8 33 33 H 0.96997 * 119.99869 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.05462 * 179.72740 * 20 11 10 35 35 H 1.08001 * 119.94688 * 179.97438 * 21 20 11 36 36 H 1.08001 * 119.66112 * 180.27415 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2076 1.1946 0.0000 4 6 3.5997 1.1457 -0.0051 5 7 4.3510 2.3255 -0.0104 6 6 3.8808 3.4211 -0.6389 7 8 2.8499 3.3584 -1.2808 8 6 4.6171 4.6971 -0.5481 9 6 4.1262 5.8343 -1.2016 10 6 4.8058 7.0133 -1.1253 11 6 5.9984 7.0894 -0.3789 12 6 6.7030 8.3088 -0.2933 13 1 7.7643 8.3063 -0.0930 14 6 6.0253 9.5240 -0.4682 15 7 4.7230 9.5651 -0.3735 16 14 6.9847 11.0838 -0.8368 17 1 7.0348 11.2988 -2.3053 18 1 6.3157 12.2410 -0.1897 19 1 8.3662 10.9517 -0.3084 20 6 6.4884 5.9426 0.2769 21 6 5.8045 4.7667 0.1909 22 6 4.2309 -0.0914 0.0009 23 7 3.5266 -1.2056 0.0063 24 6 2.2069 -1.1939 0.0057 25 17 1.3373 -2.6962 0.0123 26 1 -0.3633 0.0050 1.0276 27 1 -0.3632 0.8875 -0.5182 28 1 -0.3634 -0.8924 -0.5095 29 1 1.6873 2.1411 -0.0004 30 1 5.2106 2.3553 0.4382 31 1 3.2104 5.7757 -1.7710 32 1 4.4288 7.8887 -1.6332 33 1 4.2542 10.4056 -0.4948 34 1 7.4045 5.9952 0.8464 35 1 6.1795 3.8871 0.6929 36 1 5.3098 -0.1409 0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759240920.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:32 Heat of formation + Delta-G solvation = 2.029539 kcal Electronic energy + Delta-G solvation = -22153.295952 eV Core-core repulsion = 18627.392783 eV Total energy + Delta-G solvation = -3525.903170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79505 -39.13809 -37.36960 -36.65347 -34.76247 -34.06280 -33.78369 -30.85597 -29.96422 -29.27220 -27.48219 -26.13579 -23.94430 -22.66170 -21.78794 -20.89734 -19.93453 -17.93474 -17.65728 -17.29851 -16.65162 -16.32180 -15.46163 -14.90895 -14.43204 -14.28240 -14.15576 -13.89251 -13.40638 -13.25960 -12.99304 -12.96644 -12.81256 -12.38909 -12.17607 -12.04636 -11.90130 -11.56828 -11.36350 -11.19763 -11.08674 -10.81952 -10.57064 -10.20186 -9.90139 -9.67993 -9.49520 -9.47781 -9.10236 -8.17777 -7.86576 -7.72527 -7.16567 -4.75784 0.81921 1.13253 1.78761 2.02794 2.80694 2.87168 2.90455 2.91435 3.28542 3.44123 3.64009 3.75082 4.37578 4.40073 4.70534 4.76638 4.83366 5.24814 5.40734 5.41105 5.47093 5.66978 5.79551 5.83562 5.96654 6.03543 6.13099 6.23130 6.65802 6.68404 6.77756 6.89190 6.93189 7.27542 7.43673 7.49686 7.63363 7.71260 7.85625 7.93286 8.27684 8.47368 8.58789 8.66843 9.74680 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.043961 B = 0.002337 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.782363 B =11977.778346 C =12466.654115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.077 4.077 4 C 0.132 3.868 5 N -0.677 5.677 6 C 0.570 3.430 7 O -0.551 6.551 8 C -0.291 4.291 9 C -0.031 4.031 10 C -0.183 4.183 11 C 0.129 3.871 12 C -0.434 4.434 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.763 5.763 16 Si 0.916 3.084 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.258 1.258 20 C -0.233 4.233 21 C -0.047 4.047 22 C 0.074 3.926 23 N -0.455 5.455 24 C 0.138 3.862 25 Cl -0.040 7.040 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.412 0.588 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.289 0.711 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -11.447 2.150 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.098 4.098 3 C -0.105 4.105 4 C 0.032 3.968 5 N -0.322 5.322 6 C 0.368 3.632 7 O -0.432 6.432 8 C -0.296 4.296 9 C -0.050 4.050 10 C -0.202 4.202 11 C 0.125 3.875 12 C -0.461 4.461 13 H 0.105 0.895 14 C -0.151 4.151 15 N -0.386 5.386 16 Si 0.740 3.260 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.252 4.252 21 C -0.066 4.066 22 C -0.087 4.087 23 N -0.164 5.164 24 C -0.027 4.027 25 Cl -0.012 7.012 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.175 0.825 30 H 0.250 0.750 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.635 -12.158 1.710 12.804 hybrid contribution 0.419 1.368 0.146 1.438 sum -3.216 -10.790 1.856 11.411 Atomic orbital electron populations 1.20835 0.89323 1.03903 1.03141 1.20456 0.98043 0.91093 1.00171 1.21601 0.92534 0.98903 0.97502 1.18926 0.92018 0.87808 0.98018 1.43665 1.23307 1.09426 1.55811 1.18840 0.84470 0.83252 0.76610 1.90666 1.25371 1.84987 1.42135 1.18699 1.01714 0.92379 1.16760 1.20456 0.97331 0.91748 0.95514 1.21029 0.98670 0.96798 1.03704 1.17826 0.90996 0.92113 0.86533 1.19934 0.96838 0.90134 1.39233 0.89471 1.26162 0.95005 1.01930 0.91982 1.69735 1.08959 1.29559 1.30331 0.86147 0.80720 0.79315 0.79864 1.18852 1.19841 1.18143 1.20680 1.02953 0.94093 1.07484 1.20354 0.93714 0.96444 0.96042 1.22401 0.99999 0.85180 1.01086 1.66856 1.06584 1.31100 1.11863 1.21307 0.89665 0.86754 1.04977 1.98362 1.73567 1.32525 1.96761 0.90349 0.90485 0.90555 0.82476 0.75005 0.88037 0.85998 0.89925 0.88239 0.89192 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.63 36.01 0.35 -0.83 16 2 C -0.09 -1.24 5.90 -104.47 -0.62 -1.86 16 3 C -0.08 -1.15 8.45 -39.10 -0.33 -1.48 16 4 C 0.13 1.93 6.31 -83.55 -0.53 1.40 16 5 N -0.68 -10.25 5.30 -10.68 -0.06 -10.31 16 6 C 0.57 11.00 7.53 -12.44 -0.09 10.91 16 7 O -0.55 -11.90 14.00 5.27 0.07 -11.83 16 8 C -0.29 -6.09 5.89 -104.73 -0.62 -6.71 16 9 C -0.03 -0.71 9.52 -39.61 -0.38 -1.09 16 10 C -0.18 -4.40 8.63 -39.27 -0.34 -4.74 16 11 C 0.13 3.08 5.57 -106.80 -0.60 2.49 16 12 C -0.43 -10.18 9.05 -37.75 -0.34 -10.53 16 13 H 0.09 1.93 7.91 -52.49 -0.42 1.51 16 14 C 0.07 1.60 5.15 -17.31 -0.09 1.51 16 15 N -0.76 -17.71 10.94 55.56 0.61 -17.10 16 16 Si 0.92 16.49 29.59 -169.99 -5.03 11.46 16 17 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 18 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 19 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 20 C -0.23 -4.99 9.73 -39.27 -0.38 -5.38 16 21 C -0.05 -0.90 9.47 -39.60 -0.37 -1.28 16 22 C 0.07 0.97 11.12 -17.32 -0.19 0.78 16 23 N -0.45 -6.50 10.33 -10.20 -0.11 -6.60 16 24 C 0.14 1.89 7.27 -17.44 -0.13 1.76 16 25 Cl -0.04 -0.47 27.45 -51.86 -1.42 -1.90 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 28 H 0.08 0.71 6.91 -51.93 -0.36 0.35 16 29 H 0.16 2.54 6.46 -52.48 -0.34 2.20 16 30 H 0.41 5.10 6.84 -40.82 -0.28 4.82 16 31 H 0.10 2.27 7.63 -52.48 -0.40 1.87 16 32 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 33 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 34 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.09 1.37 6.38 -52.49 -0.34 1.04 16 36 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 327.06 15.07 4.93 4.93 Total: -1.00 -26.83 327.06 -8.93 -35.77 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -3.27 Total: 10.61 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -4.66 Total: -15.03 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.45 Total: -34.01 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.42 Total: -1.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.83 -8.93 -35.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759240920.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.797 kcal (2) G-P(sol) polarization free energy of solvation -26.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds