Wall clock time and date at job start Tue Mar 31 2020 10:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38489 * 120.38837 * 2 1 4 4 C 1.39297 * 118.37508 * 180.23924 * 3 2 1 5 5 N 1.39878 * 120.47756 * 179.75910 * 4 3 2 6 6 C 1.34777 * 120.00103 * 327.45149 * 5 4 3 7 7 O 1.21606 * 119.99781 * 354.80103 * 6 5 4 8 8 C 1.47594 * 120.00342 * 174.80138 * 6 5 4 9 9 C 1.40035 * 119.89991 * 180.02562 * 8 6 5 10 10 C 1.36302 * 120.10547 * 180.27908 * 9 8 6 11 11 C 1.40901 * 119.89334 * 359.51076 * 10 9 8 12 12 C 1.41090 * 120.10291 * 180.21108 * 11 10 9 13 13 H 1.08000 * 120.00017 * 204.98430 * 12 11 10 14 14 C 1.40234 * 119.99955 * 24.98779 * 12 11 10 15 15 N 1.30643 * 119.99998 * 17.26183 * 14 12 11 16 16 Si 1.86795 * 119.99850 * 197.27000 * 14 12 11 17 17 H 1.48505 * 109.47324 * 94.62493 * 16 14 12 18 18 H 1.48506 * 109.47027 * 214.61982 * 16 14 12 19 19 H 1.48501 * 109.47261 * 334.61964 * 16 14 12 20 20 C 1.40902 * 119.79615 * 0.48632 * 11 10 9 21 21 C 1.36300 * 119.89191 * 359.74680 * 20 11 10 22 22 C 1.38880 * 119.04378 * 359.48391 * 4 3 2 23 23 N 1.31818 * 120.67186 * 0.25560 * 22 4 3 24 24 C 1.31969 * 121.78573 * 0.02562 * 23 22 4 25 25 Cl 1.73591 * 119.55295 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.46875 * 270.28038 * 1 2 3 27 27 H 1.08999 * 109.46664 * 30.27808 * 1 2 3 28 28 H 1.08993 * 109.47485 * 150.27880 * 1 2 3 29 29 H 1.08003 * 120.81290 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00583 * 147.45724 * 5 4 3 31 31 H 1.08003 * 119.94855 * 359.97438 * 9 8 6 32 32 H 1.08001 * 120.05740 * 179.72321 * 10 9 8 33 33 H 0.96997 * 119.99869 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.05462 * 179.72740 * 20 11 10 35 35 H 1.08001 * 119.94688 * 179.97438 * 21 20 11 36 36 H 1.08001 * 119.66112 * 180.27415 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2076 1.1946 0.0000 4 6 3.5997 1.1457 -0.0051 5 7 4.3510 2.3255 -0.0104 6 6 3.8808 3.4211 -0.6389 7 8 2.8499 3.3584 -1.2808 8 6 4.6171 4.6971 -0.5481 9 6 4.1262 5.8343 -1.2016 10 6 4.8058 7.0133 -1.1253 11 6 5.9984 7.0894 -0.3789 12 6 6.7030 8.3088 -0.2933 13 1 7.7643 8.3063 -0.0930 14 6 6.0253 9.5240 -0.4682 15 7 4.7230 9.5651 -0.3735 16 14 6.9847 11.0838 -0.8368 17 1 7.0348 11.2988 -2.3053 18 1 6.3157 12.2410 -0.1897 19 1 8.3662 10.9517 -0.3084 20 6 6.4884 5.9426 0.2769 21 6 5.8045 4.7667 0.1909 22 6 4.2309 -0.0914 0.0009 23 7 3.5266 -1.2056 0.0063 24 6 2.2069 -1.1939 0.0057 25 17 1.3373 -2.6962 0.0123 26 1 -0.3633 0.0050 1.0276 27 1 -0.3632 0.8875 -0.5182 28 1 -0.3634 -0.8924 -0.5095 29 1 1.6873 2.1411 -0.0004 30 1 5.2106 2.3553 0.4382 31 1 3.2104 5.7757 -1.7710 32 1 4.4288 7.8887 -1.6332 33 1 4.2542 10.4056 -0.4948 34 1 7.4045 5.9952 0.8464 35 1 6.1795 3.8871 0.6929 36 1 5.3098 -0.1409 0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759240920.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:31 Heat of formation + Delta-G solvation = -11.786890 kcal Electronic energy + Delta-G solvation = -22153.895077 eV Core-core repulsion = 18627.392783 eV Total energy + Delta-G solvation = -3526.502295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99328 -40.53666 -38.99091 -37.68858 -36.10841 -35.72408 -34.79739 -32.36523 -31.61210 -30.70821 -28.43336 -27.77314 -25.18481 -23.97556 -23.22642 -22.46567 -21.41734 -19.43305 -19.17630 -18.36168 -17.93574 -17.63206 -17.04923 -16.09221 -15.93751 -15.75761 -15.58952 -15.09238 -14.90783 -14.53577 -14.37306 -14.02214 -13.84182 -13.82923 -13.65119 -13.31179 -13.14745 -12.95348 -12.85990 -12.63750 -12.39374 -12.13213 -11.80627 -11.75690 -11.38838 -11.16492 -11.14955 -10.70058 -10.34424 -9.60217 -9.53789 -9.23916 -8.82059 -6.51495 -0.29211 0.03357 0.41960 0.76823 1.15027 1.37459 1.41817 1.53501 1.98822 2.01431 2.14500 2.52079 2.76285 3.40048 3.65607 3.66406 3.69919 3.76246 4.19725 4.27680 4.32965 4.39376 4.47919 4.69928 4.81680 4.92856 4.96182 5.00523 5.05539 5.17965 5.19779 5.23297 5.56054 5.58385 5.75170 5.89974 5.99217 6.17816 6.44703 6.53903 6.57065 6.73954 6.86218 7.19295 8.12313 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.043961 B = 0.002337 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.782363 B =11977.778346 C =12466.654115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.091 4.091 4 C 0.113 3.887 5 N -0.658 5.658 6 C 0.575 3.425 7 O -0.579 6.579 8 C -0.296 4.296 9 C -0.044 4.044 10 C -0.205 4.205 11 C 0.102 3.898 12 C -0.465 4.465 13 H 0.094 0.906 14 C 0.033 3.967 15 N -0.799 5.799 16 Si 0.988 3.012 17 H -0.263 1.263 18 H -0.267 1.267 19 H -0.251 1.251 20 C -0.245 4.245 21 C -0.034 4.034 22 C 0.087 3.913 23 N -0.468 5.468 24 C 0.131 3.869 25 Cl -0.023 7.023 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.427 0.573 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.296 0.704 34 H 0.118 0.882 35 H 0.139 0.861 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 -13.060 2.952 13.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.120 4.120 4 C 0.015 3.985 5 N -0.304 5.304 6 C 0.372 3.628 7 O -0.461 6.461 8 C -0.300 4.300 9 C -0.064 4.064 10 C -0.224 4.224 11 C 0.098 3.902 12 C -0.492 4.492 13 H 0.112 0.888 14 C -0.186 4.186 15 N -0.423 5.423 16 Si 0.808 3.192 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.174 1.174 20 C -0.264 4.264 21 C -0.053 4.053 22 C -0.074 4.074 23 N -0.178 5.178 24 C -0.033 4.033 25 Cl 0.006 6.994 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.158 0.842 30 H 0.268 0.732 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.611 -13.823 2.537 14.294 hybrid contribution -0.013 1.642 -0.085 1.645 sum -2.624 -12.181 2.451 12.699 Atomic orbital electron populations 1.20914 0.87439 1.04421 1.04355 1.20671 0.99444 0.90382 0.99282 1.21594 0.93093 0.98920 0.98358 1.19047 0.91956 0.87963 0.99522 1.43261 1.23700 1.08548 1.54902 1.18559 0.83868 0.83739 0.76667 1.90658 1.26499 1.85539 1.43435 1.18945 1.02330 0.92583 1.16160 1.20533 0.97230 0.92481 0.96123 1.20956 0.99769 0.96708 1.04962 1.18187 0.91221 0.93624 0.87150 1.20219 0.97303 0.90848 1.40813 0.88814 1.27024 0.95714 1.04808 0.91074 1.69787 1.10497 1.30760 1.31224 0.85081 0.79417 0.75239 0.79468 1.18745 1.19194 1.17380 1.20958 1.03887 0.94059 1.07511 1.20732 0.92310 0.97517 0.94730 1.22835 1.01364 0.84053 0.99119 1.66970 1.06943 1.31446 1.12441 1.21571 0.89830 0.87631 1.04305 1.98368 1.73153 1.31316 1.96607 0.88693 0.90466 0.89518 0.84190 0.73229 0.88799 0.87803 0.89270 0.86407 0.84326 0.78534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.63 71.24 0.69 -1.47 16 2 C -0.09 -2.35 5.90 -19.77 -0.12 -2.47 16 3 C -0.09 -2.66 8.45 22.58 0.19 -2.46 16 4 C 0.11 3.11 6.31 38.27 0.24 3.35 16 5 N -0.66 -18.49 5.30 -305.96 -1.62 -20.12 16 6 C 0.58 21.72 7.53 86.71 0.65 22.38 16 7 O -0.58 -25.18 14.00 -4.05 -0.06 -25.23 16 8 C -0.30 -12.26 5.89 -19.93 -0.12 -12.38 16 9 C -0.04 -2.09 9.52 22.25 0.21 -1.88 16 10 C -0.20 -10.29 8.63 22.47 0.19 -10.10 16 11 C 0.10 4.96 5.57 -21.28 -0.12 4.85 16 12 C -0.46 -22.22 9.05 23.46 0.21 -22.01 16 13 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 14 C 0.03 1.50 5.15 85.35 0.44 1.94 16 15 N -0.80 -38.39 10.94 21.87 0.24 -38.15 16 16 Si 0.99 33.89 29.59 68.60 2.03 35.92 16 17 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 18 H -0.27 -8.81 7.11 99.48 0.71 -8.10 16 19 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 20 C -0.24 -10.31 9.73 22.47 0.22 -10.09 16 21 C -0.03 -1.26 9.47 22.26 0.21 -1.05 16 22 C 0.09 2.04 11.12 84.85 0.94 2.98 16 23 N -0.47 -12.23 10.33 -186.17 -1.92 -14.15 16 24 C 0.13 3.32 7.27 84.71 0.62 3.94 16 25 Cl -0.02 -0.48 27.45 -2.72 -0.07 -0.56 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 28 H 0.09 1.44 6.91 -2.39 -0.02 1.43 16 29 H 0.14 4.56 6.46 -2.91 -0.02 4.54 16 30 H 0.43 9.08 6.84 -92.71 -0.63 8.45 16 31 H 0.09 4.45 7.63 -2.91 -0.02 4.42 16 32 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 33 H 0.30 12.74 8.29 -92.71 -0.77 11.98 16 34 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.14 3.66 6.38 -2.91 -0.02 3.64 16 36 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -59.60 327.06 3.57 -56.02 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.52 Total: 30.76 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.46 Total: -24.48 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -3.30 Total: -72.42 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.23 kcal Atomic # 14 Polarization: 33.89 SS G_CDS: 2.03 Total: 35.92 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.07 Total: -0.56 kcal Total: -59.60 3.57 -56.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759240920.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.236 kcal (2) G-P(sol) polarization free energy of solvation -59.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds