Wall clock time and date at job start Tue Mar 31 2020 11:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99659 * 3 2 1 5 5 H 1.48496 * 109.47496 * 29.99714 * 3 2 1 6 6 H 1.48506 * 109.46958 * 150.00013 * 3 2 1 7 7 C 1.37881 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99942 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99459 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46624 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47032 * 179.97438 * 10 9 7 12 12 C 1.34778 * 116.99838 * 179.97438 * 11 10 9 13 13 O 1.21522 * 120.00317 * 0.02562 * 12 11 10 14 14 C 1.47291 * 119.99606 * 179.97438 * 12 11 10 15 15 C 1.38813 * 120.34081 * 359.72969 * 14 12 11 16 16 C 1.38841 * 120.72268 * 180.23346 * 15 14 12 17 17 C 1.36364 * 121.06342 * 0.05962 * 16 15 14 18 18 N 1.48016 * 119.95576 * 179.97438 * 17 16 15 19 19 O 1.21805 * 120.00317 * 37.73147 * 18 17 16 20 20 O 1.21804 * 120.00138 * 217.73459 * 18 17 16 21 21 C 1.40449 * 120.09487 * 359.95724 * 17 16 15 22 22 C 1.40809 * 121.25264 * 180.02562 * 21 17 16 23 23 C 1.36640 * 118.14944 * 179.97438 * 22 21 17 24 24 C 1.39221 * 119.90650 * 0.02562 * 23 22 21 25 25 N 1.31238 * 121.69863 * 359.97438 * 24 23 22 26 26 C 1.33333 * 121.35373 * 0.03815 * 25 24 23 27 27 H 0.96999 * 120.00089 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47484 * 60.00252 * 9 7 2 29 29 H 1.08996 * 109.47290 * 299.99300 * 9 7 2 30 30 H 1.08997 * 109.46828 * 60.00041 * 10 9 7 31 31 H 1.09001 * 109.47378 * 300.00245 * 10 9 7 32 32 H 1.07995 * 119.64245 * 0.26449 * 15 14 12 33 33 H 1.08000 * 119.47181 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.92698 * 0.02562 * 22 21 17 35 35 H 1.07996 * 120.04153 * 179.97438 * 23 22 21 36 36 H 1.07999 * 119.15209 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 8 5.4736 -2.6365 0.0022 12 6 6.0855 -3.8374 0.0037 13 8 5.4237 -4.8566 0.0046 14 6 7.5564 -3.9144 0.0032 15 6 8.3193 -2.7547 -0.0045 16 6 9.7062 -2.8181 -0.0099 17 6 10.3558 -4.0170 -0.0090 18 7 11.8354 -4.0560 -0.0155 19 8 12.4691 -3.2361 0.6247 20 8 12.4195 -4.9080 -0.6610 21 6 9.6229 -5.2151 -0.0017 22 6 10.2685 -6.4665 -0.0001 23 6 9.4934 -7.5917 0.0077 24 6 8.1057 -7.4787 0.0133 25 7 7.5090 -6.3099 0.0118 26 6 8.2077 -5.1743 0.0040 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6800 0.8911 29 1 3.8753 -0.6804 -0.8889 30 1 3.6586 -3.1509 -0.8875 31 1 3.6579 -3.1498 0.8924 32 1 7.8287 -1.7926 -0.0058 33 1 10.2799 -1.9030 -0.0163 34 1 11.3463 -6.5350 -0.0041 35 1 9.9566 -8.5673 0.0087 36 1 7.5049 -8.3761 0.0190 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766232054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:06 Heat of formation + Delta-G solvation = -20.395182 kcal Electronic energy + Delta-G solvation = -24851.353637 eV Core-core repulsion = 20883.768894 eV Total energy + Delta-G solvation = -3967.584743 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.82481 -41.46739 -39.89986 -37.87010 -37.00840 -36.33917 -34.26248 -33.38809 -31.65384 -31.45514 -30.73246 -27.69630 -25.45608 -24.92043 -24.38557 -23.50639 -21.30405 -20.73540 -19.72127 -19.29411 -18.78621 -18.34375 -17.76916 -17.11084 -17.03764 -16.30132 -16.25893 -15.79560 -15.04988 -14.94328 -14.41978 -14.24534 -14.02410 -13.71666 -13.54245 -13.11965 -12.68560 -12.54927 -12.25803 -12.01666 -11.72426 -11.66490 -11.52572 -11.39308 -11.21659 -10.80406 -10.76462 -10.28815 -10.02540 -9.81573 -9.80876 -9.64587 -9.42346 -9.27648 -8.68574 -6.18777 -4.20661 -1.11115 -0.02023 0.22821 0.81063 1.02374 1.83561 2.63119 2.69950 3.22510 3.30469 3.32930 3.39035 3.46664 3.72745 3.82469 3.95058 4.21218 4.29412 4.32437 4.41667 4.62148 4.82793 4.88235 5.14443 5.14598 5.20146 5.25797 5.46237 5.50713 5.83541 5.85848 5.87064 5.94936 6.34224 6.57203 7.06151 7.12163 7.13866 7.29776 7.54821 7.91116 8.32975 8.82768 9.40174 10.93740 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.002932 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.375649 B = 9549.057340 C =10880.618385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.085 3.915 11 O -0.358 6.358 12 C 0.490 3.510 13 O -0.457 6.457 14 C -0.036 4.036 15 C -0.049 4.049 16 C -0.043 4.043 17 C 0.000 4.000 18 N 0.023 4.977 19 O -0.140 6.140 20 O -0.151 6.151 21 C -0.078 4.078 22 C -0.068 4.068 23 C -0.150 4.150 24 C 0.145 3.855 25 N -0.430 5.430 26 C 0.166 3.834 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.176 0.824 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.081 -11.507 0.059 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.013 3.987 11 O -0.276 6.276 12 C 0.331 3.669 13 O -0.342 6.342 14 C -0.038 4.038 15 C -0.070 4.070 16 C -0.062 4.062 17 C -0.083 4.083 18 N 0.546 4.454 19 O -0.360 6.360 20 O -0.367 6.367 21 C -0.081 4.081 22 C -0.094 4.094 23 C -0.170 4.170 24 C -0.027 4.027 25 N -0.137 5.137 26 C 0.043 3.957 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.193 0.807 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 21.981 -11.521 0.058 24.817 hybrid contribution 1.532 0.726 -0.049 1.696 sum 23.513 -10.795 0.009 25.873 Atomic orbital electron populations 1.69892 1.06300 1.27287 1.49863 1.24940 0.94769 0.99192 0.94081 0.86749 0.80402 0.83290 0.78736 1.20040 1.21127 1.18774 1.20820 0.88162 0.95101 1.52635 0.90587 1.19640 0.97111 0.89934 0.97933 1.23482 0.71248 1.01859 1.02145 1.86516 1.26956 1.30827 1.83276 1.20406 0.87611 0.83096 0.75786 1.90929 1.65724 1.35733 1.41852 1.19608 0.92131 0.91915 1.00154 1.21700 0.91516 0.99988 0.93783 1.20863 0.95171 0.96855 0.93357 1.20887 0.79339 0.96040 1.11999 1.43581 1.03215 0.99831 0.98793 1.94590 1.66727 1.34281 1.40377 1.94512 1.70996 1.30840 1.40380 1.18217 0.93592 0.92834 1.03479 1.21865 1.02139 0.90550 0.94816 1.22136 0.95170 1.00214 0.99502 1.23431 0.92440 0.96087 0.90714 1.68455 1.37792 0.97161 1.10283 1.18398 0.87258 0.92660 0.97427 0.92357 0.95308 0.95741 0.91385 0.91343 0.80677 0.81874 0.82375 0.83094 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.53 -14.60 9.66 -34.44 -0.33 -14.94 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.20 4.42 -27.88 -0.12 -0.32 16 10 C 0.08 1.71 5.42 37.16 0.20 1.91 16 11 O -0.36 -6.22 9.45 -40.70 -0.38 -6.60 16 12 C 0.49 8.04 7.89 34.41 0.27 8.31 16 13 O -0.46 -8.70 14.98 -19.28 -0.29 -8.99 16 14 C -0.04 -0.46 5.90 -104.63 -0.62 -1.08 16 15 C -0.05 -0.47 9.59 -39.15 -0.38 -0.85 16 16 C -0.04 -0.36 9.55 -40.03 -0.38 -0.74 16 17 C 0.00 0.00 6.48 -79.79 -0.52 -0.51 16 18 N 0.02 0.25 4.28 34.04 0.15 0.39 16 19 O -0.14 -1.56 18.91 -29.46 -0.56 -2.12 16 20 O -0.15 -1.66 16.48 -29.46 -0.49 -2.14 16 21 C -0.08 -0.83 5.74 -106.82 -0.61 -1.44 16 22 C -0.07 -0.58 9.28 -39.19 -0.36 -0.95 16 23 C -0.15 -1.02 10.03 -39.79 -0.40 -1.42 16 24 C 0.15 1.27 11.15 -17.44 -0.19 1.08 16 25 N -0.43 -5.64 8.44 -10.76 -0.09 -5.73 16 26 C 0.17 2.10 6.61 -84.57 -0.56 1.54 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 29 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.18 1.39 7.58 -52.49 -0.40 0.99 16 33 H 0.16 0.93 7.97 -52.49 -0.42 0.51 16 34 H 0.16 1.21 5.84 -52.49 -0.31 0.90 16 35 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -33.22 326.74 -7.90 -41.13 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -3.17 Total: -3.42 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -4.10 Total: -7.46 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.83 Total: -31.39 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.72 Total: -19.85 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.22 -7.90 -41.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766232054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.730 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds