Wall clock time and date at job start Tue Mar 31 2020 11:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99659 * 3 2 1 5 5 H 1.48496 * 109.47496 * 29.99714 * 3 2 1 6 6 H 1.48506 * 109.46958 * 150.00013 * 3 2 1 7 7 C 1.37881 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99942 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99459 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46624 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47032 * 179.97438 * 10 9 7 12 12 C 1.34778 * 116.99838 * 179.97438 * 11 10 9 13 13 O 1.21522 * 120.00317 * 0.02562 * 12 11 10 14 14 C 1.47291 * 119.99606 * 179.97438 * 12 11 10 15 15 C 1.38813 * 120.34081 * 359.72969 * 14 12 11 16 16 C 1.38841 * 120.72268 * 180.23346 * 15 14 12 17 17 C 1.36364 * 121.06342 * 0.05962 * 16 15 14 18 18 N 1.48016 * 119.95576 * 179.97438 * 17 16 15 19 19 O 1.21805 * 120.00317 * 37.73147 * 18 17 16 20 20 O 1.21804 * 120.00138 * 217.73459 * 18 17 16 21 21 C 1.40449 * 120.09487 * 359.95724 * 17 16 15 22 22 C 1.40809 * 121.25264 * 180.02562 * 21 17 16 23 23 C 1.36640 * 118.14944 * 179.97438 * 22 21 17 24 24 C 1.39221 * 119.90650 * 0.02562 * 23 22 21 25 25 N 1.31238 * 121.69863 * 359.97438 * 24 23 22 26 26 C 1.33333 * 121.35373 * 0.03815 * 25 24 23 27 27 H 0.96999 * 120.00089 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47484 * 60.00252 * 9 7 2 29 29 H 1.08996 * 109.47290 * 299.99300 * 9 7 2 30 30 H 1.08997 * 109.46828 * 60.00041 * 10 9 7 31 31 H 1.09001 * 109.47378 * 300.00245 * 10 9 7 32 32 H 1.07995 * 119.64245 * 0.26449 * 15 14 12 33 33 H 1.08000 * 119.47181 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.92698 * 0.02562 * 22 21 17 35 35 H 1.07996 * 120.04153 * 179.97438 * 23 22 21 36 36 H 1.07999 * 119.15209 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 8 5.4736 -2.6365 0.0022 12 6 6.0855 -3.8374 0.0037 13 8 5.4237 -4.8566 0.0046 14 6 7.5564 -3.9144 0.0032 15 6 8.3193 -2.7547 -0.0045 16 6 9.7062 -2.8181 -0.0099 17 6 10.3558 -4.0170 -0.0090 18 7 11.8354 -4.0560 -0.0155 19 8 12.4691 -3.2361 0.6247 20 8 12.4195 -4.9080 -0.6610 21 6 9.6229 -5.2151 -0.0017 22 6 10.2685 -6.4665 -0.0001 23 6 9.4934 -7.5917 0.0077 24 6 8.1057 -7.4787 0.0133 25 7 7.5090 -6.3099 0.0118 26 6 8.2077 -5.1743 0.0040 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6800 0.8911 29 1 3.8753 -0.6804 -0.8889 30 1 3.6586 -3.1509 -0.8875 31 1 3.6579 -3.1498 0.8924 32 1 7.8287 -1.7926 -0.0058 33 1 10.2799 -1.9030 -0.0163 34 1 11.3463 -6.5350 -0.0041 35 1 9.9566 -8.5673 0.0087 36 1 7.5049 -8.3761 0.0190 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766232054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:05 Heat of formation + Delta-G solvation = -39.664580 kcal Electronic energy + Delta-G solvation = -24852.189221 eV Core-core repulsion = 20883.768894 eV Total energy + Delta-G solvation = -3968.420327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.62264 -42.31378 -41.14296 -38.63649 -37.83389 -37.74575 -35.41354 -35.04370 -32.93049 -32.20418 -32.13669 -28.67793 -27.13781 -25.64246 -25.16196 -24.57147 -22.72675 -22.22169 -20.57051 -20.09485 -19.64278 -19.20966 -18.98038 -18.62857 -17.94635 -17.66023 -17.60572 -16.62365 -16.28594 -15.95537 -15.69906 -15.33042 -15.06691 -14.73388 -14.68196 -14.37749 -14.20247 -13.46647 -13.31683 -13.19438 -12.91967 -12.83407 -12.53651 -12.50638 -12.47442 -12.35229 -12.01952 -11.81741 -11.74347 -11.54238 -11.45989 -10.80964 -10.66931 -10.33554 -10.07539 -8.34058 -6.42780 -1.91731 -0.72751 -0.56818 0.00744 0.24531 1.00132 1.37236 1.39595 1.41699 1.53725 1.67500 2.35045 2.60652 2.76632 3.00648 3.01165 3.12451 3.18780 3.25571 3.68872 3.74206 3.95268 4.06747 4.16100 4.17971 4.23583 4.27013 4.49339 4.60669 4.62985 4.76393 4.86293 4.98668 5.09686 5.29264 5.31549 5.40432 5.51569 6.15393 6.30145 6.53763 6.63649 6.64164 7.22368 8.82134 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.002932 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.375649 B = 9549.057340 C =10880.618385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.238 1.238 7 C -0.544 4.544 8 H 0.033 0.967 9 C -0.002 4.002 10 C 0.096 3.904 11 O -0.351 6.351 12 C 0.493 3.507 13 O -0.492 6.492 14 C -0.068 4.068 15 C -0.025 4.025 16 C -0.034 4.034 17 C 0.000 4.000 18 N 0.025 4.975 19 O -0.146 6.146 20 O -0.155 6.155 21 C -0.088 4.088 22 C -0.076 4.076 23 C -0.132 4.132 24 C 0.145 3.855 25 N -0.484 5.484 26 C 0.151 3.849 27 H 0.270 0.730 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.195 0.805 33 H 0.196 0.804 34 H 0.169 0.831 35 H 0.194 0.806 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.508 -10.815 0.045 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.582 4.582 8 H 0.052 0.948 9 C -0.040 4.040 10 C 0.023 3.977 11 O -0.268 6.268 12 C 0.336 3.664 13 O -0.380 6.380 14 C -0.070 4.070 15 C -0.045 4.045 16 C -0.052 4.052 17 C -0.083 4.083 18 N 0.547 4.453 19 O -0.365 6.365 20 O -0.371 6.371 21 C -0.092 4.092 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.026 4.026 25 N -0.191 5.191 26 C 0.027 3.973 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.212 0.788 33 H 0.213 0.787 34 H 0.187 0.813 35 H 0.211 0.789 36 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 25.447 -10.846 0.047 27.663 hybrid contribution 0.509 0.314 -0.048 0.600 sum 25.956 -10.532 -0.001 28.012 Atomic orbital electron populations 1.70051 1.08479 1.28648 1.51416 1.25993 0.95663 1.03732 0.93401 0.85586 0.79704 0.77415 0.79552 1.18788 1.20933 1.16120 1.21125 0.90859 0.93735 1.52431 0.94834 1.19471 0.93973 0.91675 0.98844 1.23011 0.73231 1.00119 1.01307 1.86480 1.24913 1.31715 1.83656 1.21017 0.89078 0.82024 0.74298 1.90905 1.66808 1.36556 1.43719 1.19452 0.89763 0.93633 1.04145 1.21908 0.91841 0.99532 0.91193 1.21154 0.94615 0.97549 0.91906 1.21043 0.78935 0.96582 1.11751 1.43643 1.03399 0.99673 0.98585 1.94591 1.66953 1.34418 1.40523 1.94510 1.71220 1.30919 1.40438 1.18314 0.92896 0.94054 1.03929 1.22115 1.02769 0.90385 0.94935 1.22531 0.94092 1.01596 0.96871 1.24019 0.93887 0.95759 0.88917 1.68424 1.39505 0.98538 1.12670 1.18459 0.88036 0.92534 0.98223 0.92087 0.94199 0.94315 0.92353 0.92345 0.78770 0.78684 0.81335 0.78881 0.78433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 2 C 0.01 0.57 5.47 84.65 0.46 1.03 16 3 Si 0.96 41.94 27.47 68.60 1.88 43.83 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 7 C -0.54 -30.75 9.66 25.60 0.25 -30.50 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 9 C 0.00 -0.10 4.42 29.85 0.13 0.03 16 10 C 0.10 3.96 5.42 71.98 0.39 4.35 16 11 O -0.35 -11.99 9.45 -56.89 -0.54 -12.53 16 12 C 0.49 16.36 7.89 70.20 0.55 16.91 16 13 O -0.49 -19.52 14.98 19.76 0.30 -19.22 16 14 C -0.07 -1.71 5.90 -19.87 -0.12 -1.83 16 15 C -0.02 -0.42 9.59 22.55 0.22 -0.20 16 16 C -0.03 -0.47 9.55 21.98 0.21 -0.26 16 17 C 0.00 0.00 6.48 36.48 0.24 0.23 16 18 N 0.03 0.48 4.28 -46.22 -0.20 0.28 16 19 O -0.15 -2.92 18.91 18.88 0.36 -2.56 16 20 O -0.15 -3.06 16.48 18.88 0.31 -2.75 16 21 C -0.09 -1.76 5.74 -21.29 -0.12 -1.88 16 22 C -0.08 -1.15 9.28 22.52 0.21 -0.94 16 23 C -0.13 -1.43 10.03 22.13 0.22 -1.21 16 24 C 0.15 2.35 11.15 85.02 0.95 3.30 16 25 N -0.48 -12.70 8.44 -187.94 -1.59 -14.28 16 26 C 0.15 3.76 6.61 40.63 0.27 4.03 16 27 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.04 1.72 7.20 -2.39 -0.02 1.70 16 29 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.20 2.47 7.58 -2.91 -0.02 2.45 16 33 H 0.20 1.43 7.97 -2.91 -0.02 1.40 16 34 H 0.17 2.15 5.84 -2.91 -0.02 2.13 16 35 H 0.19 0.39 8.06 -2.91 -0.02 0.36 16 36 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -75.41 326.74 5.77 -69.64 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 1.09 Total: 2.47 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 3.86 Total: -6.95 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.48 Total: -71.93 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: 0.43 Total: -37.06 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.83 kcal Total: -75.41 5.77 -69.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766232054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.974 kcal (2) G-P(sol) polarization free energy of solvation -75.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds