Wall clock time and date at job start Tue Mar 31 2020 11:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 119.99859 * 2 1 4 4 H 1.48496 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47256 * 300.00308 * 3 2 1 6 6 H 1.48504 * 109.47202 * 60.00268 * 3 2 1 7 7 C 1.39948 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99268 * 163.71028 * 7 2 1 9 9 C 1.41393 * 120.00373 * 343.70130 * 7 2 1 10 10 C 1.40735 * 120.24402 * 334.20354 * 9 7 2 11 11 C 1.37596 * 119.73963 * 180.31731 * 10 9 7 12 12 C 1.38661 * 120.25341 * 359.65522 * 11 10 9 13 13 C 1.38612 * 120.49576 * 0.02562 * 12 11 10 14 14 C 1.37632 * 120.25084 * 0.02934 * 13 12 11 15 15 C 1.50706 * 120.12864 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47126 * 264.99988 * 15 14 13 17 17 O 1.20826 * 120.00124 * 359.97438 * 16 15 14 18 18 O 1.34226 * 119.99450 * 179.97438 * 16 15 14 19 19 C 1.45204 * 116.99480 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47100 * 180.02562 * 19 18 16 21 21 C 1.50701 * 109.47259 * 179.97438 * 20 19 18 22 22 C 1.33395 * 125.19787 * 90.00345 * 21 20 19 23 23 C 1.38419 * 114.91698 * 179.97438 * 22 21 20 24 24 C 1.33392 * 114.92284 * 359.97438 * 23 22 21 25 25 S 1.75881 * 125.20424 * 269.69537 * 21 20 19 26 26 H 0.96996 * 120.00231 * 359.97438 * 1 2 3 27 27 H 1.07990 * 120.13174 * 359.97438 * 10 9 7 28 28 H 1.08006 * 119.87761 * 179.67846 * 11 10 9 29 29 H 1.07996 * 119.75360 * 180.02562 * 12 11 10 30 30 H 1.08007 * 119.87439 * 179.97438 * 13 12 11 31 31 H 1.08998 * 109.46996 * 144.99543 * 15 14 13 32 32 H 1.09001 * 109.46963 * 25.00081 * 15 14 13 33 33 H 1.08994 * 109.46855 * 60.00421 * 19 18 16 34 34 H 1.08996 * 109.47544 * 299.99969 * 19 18 16 35 35 H 1.09006 * 109.47275 * 60.00162 * 20 19 18 36 36 H 1.09004 * 109.47449 * 300.00209 * 20 19 18 37 37 H 1.07993 * 122.54065 * 359.95526 * 22 21 20 38 38 H 1.07998 * 122.53901 * 180.02562 * 23 22 21 39 39 H 1.08004 * 125.20249 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7021 1.3464 0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0554 -1.2306 -0.2629 9 6 1.3436 -2.4121 0.3426 10 6 0.2102 -2.3815 1.1763 11 6 -0.4244 -3.5562 1.5089 12 6 0.0444 -4.7661 1.0202 13 6 1.1558 -4.8074 0.1929 14 6 1.8071 -3.6450 -0.1520 15 6 3.0156 -3.6932 -1.0511 16 6 4.2662 -3.7192 -0.2107 17 8 4.1847 -3.7000 0.9946 18 8 5.4708 -3.7636 -0.8014 19 6 6.6318 -3.7858 0.0703 20 6 7.9048 -3.8353 -0.7770 21 6 9.1099 -3.8577 0.1276 22 6 9.6928 -4.9587 0.6047 23 6 10.7895 -4.7321 1.4183 24 6 11.0975 -3.4472 1.6015 25 16 9.9674 -2.4367 0.7097 26 1 -0.4850 0.8400 0.0004 27 1 -0.1567 -1.4403 1.5580 28 1 -1.2913 -3.5357 2.1528 29 1 -0.4601 -5.6832 1.2860 30 1 1.5127 -5.7555 -0.1817 31 1 3.0268 -2.8118 -1.6922 32 1 2.9737 -4.5907 -1.6682 33 1 6.5876 -4.6658 0.7119 34 1 6.6408 -2.8869 0.6866 35 1 7.9488 -2.9550 -1.4184 36 1 7.8962 -4.7340 -1.3937 37 1 9.3359 -5.9515 0.3739 38 1 11.3535 -5.5348 1.8698 39 1 11.9178 -3.0832 2.2024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777159462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:33 Heat of formation + Delta-G solvation = -46.219975 kcal Electronic energy + Delta-G solvation = -22670.694141 eV Core-core repulsion = 19248.282765 eV Total energy + Delta-G solvation = -3422.411376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.91579 -38.21050 -37.61734 -35.95932 -33.66131 -33.17630 -31.79232 -29.50695 -28.41767 -26.97869 -25.15138 -24.39434 -22.40569 -21.11918 -20.93049 -19.50900 -19.31663 -17.44910 -17.20013 -16.80661 -16.24379 -15.80786 -15.61903 -15.29378 -14.51940 -14.29494 -13.70557 -13.51794 -13.50056 -13.10767 -12.73077 -12.61610 -12.56987 -12.47971 -11.84549 -11.62384 -11.59155 -11.53636 -11.19418 -11.08116 -11.01068 -10.91358 -10.72812 -10.41020 -10.21667 -9.74952 -9.52725 -9.41362 -9.19557 -8.89273 -8.68333 -7.37492 -7.34701 -6.77348 -4.39220 0.74768 1.40946 1.79375 2.48546 2.69773 2.86721 2.96201 3.06848 3.12397 3.24165 3.36851 3.92234 4.60356 4.65248 4.81500 4.88738 4.97358 5.22755 5.33309 5.37425 5.56672 5.63569 5.72888 5.82329 5.92566 5.97366 6.05315 6.12307 6.25431 6.26436 6.39895 6.47786 6.73258 6.96849 7.05208 7.25516 7.37650 7.60380 7.87272 8.01849 8.09050 8.26722 8.46943 8.61285 8.86967 8.96412 10.16647 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.003276 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.585536 B = 8545.151615 C = 9971.187506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.458 4.458 8 H 0.074 0.926 9 C 0.130 3.870 10 C -0.158 4.158 11 C -0.104 4.104 12 C -0.240 4.240 13 C -0.077 4.077 14 C -0.195 4.195 15 C -0.041 4.041 16 C 0.459 3.541 17 O -0.491 6.491 18 O -0.368 6.368 19 C 0.071 3.929 20 C -0.048 4.048 21 C -0.172 4.172 22 C -0.136 4.136 23 C -0.135 4.135 24 C -0.217 4.217 25 S 0.105 5.895 26 H 0.280 0.720 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.980 -4.985 -1.663 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.092 0.908 9 C 0.128 3.872 10 C -0.177 4.177 11 C -0.123 4.123 12 C -0.259 4.259 13 C -0.095 4.095 14 C -0.197 4.197 15 C -0.078 4.078 16 C 0.301 3.699 17 O -0.376 6.376 18 O -0.287 6.287 19 C -0.004 4.004 20 C -0.087 4.087 21 C -0.289 4.289 22 C -0.167 4.167 23 C -0.165 4.165 24 C -0.352 4.352 25 S 0.369 5.631 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 16.629 -3.243 -1.471 17.006 hybrid contribution 0.634 -0.727 0.530 1.100 sum 17.263 -3.970 -0.941 17.738 Atomic orbital electron populations 1.69821 1.07500 1.29126 1.35272 1.25884 0.94713 1.01222 0.92194 0.86336 0.81092 0.81172 0.78647 1.18438 1.19861 1.19642 1.19525 0.97237 0.91035 1.40920 0.90762 1.17356 0.90799 0.91221 0.87861 1.21307 0.98873 0.96753 1.00814 1.20706 0.98594 0.93431 0.99541 1.20319 1.01591 0.96250 1.07768 1.20325 0.95874 0.95509 0.97805 1.19056 0.99506 0.94289 1.06805 1.19990 0.86710 1.04219 0.96902 1.24503 0.84198 0.72177 0.88999 1.90647 1.86958 1.43890 1.16107 1.86494 1.15256 1.85125 1.41827 1.22845 0.82509 1.02882 0.92177 1.20008 0.87901 1.04931 0.95864 1.24290 1.02563 0.95976 1.06100 1.20185 0.97157 0.99328 0.99990 1.20170 0.98700 0.96610 1.01031 1.25654 1.05245 0.96861 1.07474 1.84458 1.23807 1.09643 1.45213 0.90891 0.86407 0.89444 0.89499 0.89535 0.87421 0.89342 0.91282 0.91293 0.89506 0.88769 0.84099 0.84267 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.25 10.95 55.55 0.61 -19.65 16 2 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 3 Si 0.90 18.79 29.59 -169.99 -5.03 13.76 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.00 8.14 -37.74 -0.31 -12.31 16 8 H 0.07 1.91 6.67 -52.49 -0.35 1.56 16 9 C 0.13 3.45 5.56 -106.83 -0.59 2.86 16 10 C -0.16 -4.19 8.69 -38.87 -0.34 -4.53 16 11 C -0.10 -2.51 10.02 -39.66 -0.40 -2.91 16 12 C -0.24 -5.52 10.05 -39.29 -0.39 -5.91 16 13 C -0.08 -1.75 9.66 -39.66 -0.38 -2.14 16 14 C -0.19 -4.67 4.43 -103.91 -0.46 -5.13 16 15 C -0.04 -0.82 5.29 -29.03 -0.15 -0.97 16 16 C 0.46 9.33 7.57 36.01 0.27 9.60 16 17 O -0.49 -11.67 15.78 -18.75 -0.30 -11.96 16 18 O -0.37 -6.28 10.22 -39.25 -0.40 -6.68 16 19 C 0.07 1.03 5.45 37.16 0.20 1.23 16 20 C -0.05 -0.53 6.09 -27.88 -0.17 -0.70 16 21 C -0.17 -1.86 5.76 -36.00 -0.21 -2.06 16 22 C -0.14 -1.34 10.05 -41.21 -0.41 -1.75 16 23 C -0.13 -1.21 10.18 -41.21 -0.42 -1.63 16 24 C -0.22 -1.94 11.23 29.04 0.33 -1.61 16 25 S 0.11 1.09 23.33 -107.50 -2.51 -1.42 16 26 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 27 H 0.12 3.20 6.20 -52.49 -0.33 2.88 16 28 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 31 H 0.11 2.12 7.08 -51.93 -0.37 1.75 16 32 H 0.09 1.47 8.05 -51.93 -0.42 1.06 16 33 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 34 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -29.80 351.73 -10.68 -40.47 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.82 Total: 6.28 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -3.53 Total: -26.11 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.61 Total: -19.65 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.70 Total: -18.64 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.51 Total: -1.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.80 -10.68 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777159462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.747 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds