Wall clock time and date at job start Tue Mar 31 2020 11:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 119.99859 * 2 1 4 4 H 1.48496 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47256 * 300.00308 * 3 2 1 6 6 H 1.48504 * 109.47202 * 60.00268 * 3 2 1 7 7 C 1.39948 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99268 * 163.71028 * 7 2 1 9 9 C 1.41393 * 120.00373 * 343.70130 * 7 2 1 10 10 C 1.40735 * 120.24402 * 334.20354 * 9 7 2 11 11 C 1.37596 * 119.73963 * 180.31731 * 10 9 7 12 12 C 1.38661 * 120.25341 * 359.65522 * 11 10 9 13 13 C 1.38612 * 120.49576 * 0.02562 * 12 11 10 14 14 C 1.37632 * 120.25084 * 0.02934 * 13 12 11 15 15 C 1.50706 * 120.12864 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47126 * 264.99988 * 15 14 13 17 17 O 1.20826 * 120.00124 * 359.97438 * 16 15 14 18 18 O 1.34226 * 119.99450 * 179.97438 * 16 15 14 19 19 C 1.45204 * 116.99480 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47100 * 180.02562 * 19 18 16 21 21 C 1.50701 * 109.47259 * 179.97438 * 20 19 18 22 22 C 1.33395 * 125.19787 * 90.00345 * 21 20 19 23 23 C 1.38419 * 114.91698 * 179.97438 * 22 21 20 24 24 C 1.33392 * 114.92284 * 359.97438 * 23 22 21 25 25 S 1.75881 * 125.20424 * 269.69537 * 21 20 19 26 26 H 0.96996 * 120.00231 * 359.97438 * 1 2 3 27 27 H 1.07990 * 120.13174 * 359.97438 * 10 9 7 28 28 H 1.08006 * 119.87761 * 179.67846 * 11 10 9 29 29 H 1.07996 * 119.75360 * 180.02562 * 12 11 10 30 30 H 1.08007 * 119.87439 * 179.97438 * 13 12 11 31 31 H 1.08998 * 109.46996 * 144.99543 * 15 14 13 32 32 H 1.09001 * 109.46963 * 25.00081 * 15 14 13 33 33 H 1.08994 * 109.46855 * 60.00421 * 19 18 16 34 34 H 1.08996 * 109.47544 * 299.99969 * 19 18 16 35 35 H 1.09006 * 109.47275 * 60.00162 * 20 19 18 36 36 H 1.09004 * 109.47449 * 300.00209 * 20 19 18 37 37 H 1.07993 * 122.54065 * 359.95526 * 22 21 20 38 38 H 1.07998 * 122.53901 * 180.02562 * 23 22 21 39 39 H 1.08004 * 125.20249 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7021 1.3464 0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0554 -1.2306 -0.2629 9 6 1.3436 -2.4121 0.3426 10 6 0.2102 -2.3815 1.1763 11 6 -0.4244 -3.5562 1.5089 12 6 0.0444 -4.7661 1.0202 13 6 1.1558 -4.8074 0.1929 14 6 1.8071 -3.6450 -0.1520 15 6 3.0156 -3.6932 -1.0511 16 6 4.2662 -3.7192 -0.2107 17 8 4.1847 -3.7000 0.9946 18 8 5.4708 -3.7636 -0.8014 19 6 6.6318 -3.7858 0.0703 20 6 7.9048 -3.8353 -0.7770 21 6 9.1099 -3.8577 0.1276 22 6 9.6928 -4.9587 0.6047 23 6 10.7895 -4.7321 1.4183 24 6 11.0975 -3.4472 1.6015 25 16 9.9674 -2.4367 0.7097 26 1 -0.4850 0.8400 0.0004 27 1 -0.1567 -1.4403 1.5580 28 1 -1.2913 -3.5357 2.1528 29 1 -0.4601 -5.6832 1.2860 30 1 1.5127 -5.7555 -0.1817 31 1 3.0268 -2.8118 -1.6922 32 1 2.9737 -4.5907 -1.6682 33 1 6.5876 -4.6658 0.7119 34 1 6.6408 -2.8869 0.6866 35 1 7.9488 -2.9550 -1.4184 36 1 7.8962 -4.7340 -1.3937 37 1 9.3359 -5.9515 0.3739 38 1 11.3535 -5.5348 1.8698 39 1 11.9178 -3.0832 2.2024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777159462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:32 Heat of formation + Delta-G solvation = -59.037042 kcal Electronic energy + Delta-G solvation = -22671.249931 eV Core-core repulsion = 19248.282765 eV Total energy + Delta-G solvation = -3422.967165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47062 -39.47956 -38.90166 -37.47228 -35.53527 -34.19817 -33.48252 -31.38724 -29.52662 -28.48879 -26.97164 -25.38476 -23.36299 -22.86782 -22.60130 -21.09140 -20.18708 -19.10655 -18.71137 -17.89948 -17.63455 -17.37040 -16.99128 -16.38422 -16.24186 -15.73628 -15.45301 -14.98072 -14.69724 -14.40356 -13.93636 -13.75206 -13.65123 -13.59396 -13.39076 -13.29051 -12.96359 -12.82733 -12.77289 -12.68450 -12.53550 -12.43832 -12.13336 -11.72852 -11.50325 -11.40453 -11.35449 -11.24856 -11.05469 -9.65866 -9.45783 -9.25823 -9.23187 -8.63109 -6.34192 -0.00606 0.65566 0.90967 1.06571 1.07980 1.35226 1.35729 1.47929 1.50856 1.72343 1.96685 2.18349 2.75486 3.64864 3.82078 3.84817 3.93277 4.08575 4.22908 4.25649 4.35813 4.39065 4.55336 4.57482 4.66993 4.69865 4.77906 4.79530 4.87162 5.01484 5.16668 5.18846 5.33991 5.34322 5.45535 5.51231 5.56117 5.74228 6.00470 6.12628 6.19311 6.37990 6.69607 6.91372 6.95128 7.06650 8.33424 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.003276 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.585536 B = 8545.151615 C = 9971.187506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.039 3.961 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.267 1.267 7 C -0.486 4.486 8 H 0.069 0.931 9 C 0.098 3.902 10 C -0.192 4.192 11 C -0.113 4.113 12 C -0.242 4.242 13 C -0.085 4.085 14 C -0.202 4.202 15 C -0.041 4.041 16 C 0.466 3.534 17 O -0.532 6.532 18 O -0.358 6.358 19 C 0.069 3.931 20 C -0.036 4.036 21 C -0.192 4.192 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.210 4.210 25 S 0.071 5.929 26 H 0.287 0.713 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.625 -6.346 -2.236 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.192 1.192 7 C -0.516 4.516 8 H 0.087 0.913 9 C 0.095 3.905 10 C -0.212 4.212 11 C -0.131 4.131 12 C -0.261 4.261 13 C -0.103 4.103 14 C -0.203 4.203 15 C -0.078 4.078 16 C 0.310 3.690 17 O -0.421 6.421 18 O -0.276 6.276 19 C -0.006 4.006 20 C -0.075 4.075 21 C -0.310 4.310 22 C -0.164 4.164 23 C -0.173 4.173 24 C -0.345 4.345 25 S 0.334 5.666 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.146 0.854 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 18.279 -4.616 -2.070 18.967 hybrid contribution 0.170 -0.448 0.743 0.884 sum 18.450 -5.064 -1.327 19.178 Atomic orbital electron populations 1.69869 1.08735 1.30319 1.35877 1.26635 0.95432 1.04108 0.91451 0.85347 0.79316 0.77095 0.79171 1.18807 1.18311 1.19205 1.19660 0.97129 0.92119 1.42649 0.91294 1.17739 0.91424 0.92678 0.88621 1.21314 1.00355 0.96971 1.02535 1.20994 0.99093 0.93319 0.99719 1.20749 1.01535 0.96882 1.06897 1.20779 0.95546 0.96619 0.97348 1.19479 1.00537 0.93827 1.06474 1.20021 0.85300 1.06090 0.96415 1.24439 0.85185 0.71079 0.88263 1.90634 1.87652 1.46020 1.17775 1.86468 1.15000 1.84327 1.41797 1.23074 0.82789 1.02073 0.92626 1.19925 0.86110 1.05998 0.95499 1.24278 1.03037 0.96300 1.07341 1.20514 0.96972 0.99755 0.99146 1.20493 0.98634 0.97319 1.00856 1.25985 1.05119 0.96561 1.06869 1.84567 1.25004 1.10734 1.46249 0.90196 0.88378 0.87457 0.86366 0.86044 0.87472 0.85425 0.91215 0.93043 0.89303 0.86891 0.82525 0.81785 0.79644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.30 10.95 21.83 0.24 -43.06 16 2 C 0.04 1.98 5.16 85.26 0.44 2.42 16 3 Si 0.97 39.22 29.59 68.60 2.03 41.25 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 7 C -0.49 -26.28 8.14 23.46 0.19 -26.09 16 8 H 0.07 3.66 6.67 -2.91 -0.02 3.64 16 9 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 10 C -0.19 -10.51 8.69 22.73 0.20 -10.32 16 11 C -0.11 -5.46 10.02 22.22 0.22 -5.23 16 12 C -0.24 -10.71 10.05 22.46 0.23 -10.48 16 13 C -0.08 -3.72 9.66 22.22 0.21 -3.51 16 14 C -0.20 -9.59 4.43 -19.40 -0.09 -9.67 16 15 C -0.04 -1.60 5.29 29.10 0.15 -1.45 16 16 C 0.47 18.72 7.57 71.24 0.54 19.26 16 17 O -0.53 -25.54 15.78 21.96 0.35 -25.20 16 18 O -0.36 -11.87 10.22 -51.38 -0.53 -12.39 16 19 C 0.07 1.96 5.45 71.98 0.39 2.36 16 20 C -0.04 -0.76 6.09 29.85 0.18 -0.57 16 21 C -0.19 -3.92 5.76 24.59 0.14 -3.78 16 22 C -0.13 -2.34 10.05 21.22 0.21 -2.13 16 23 C -0.14 -2.21 10.18 21.22 0.22 -1.99 16 24 C -0.21 -3.35 11.23 66.72 0.75 -2.60 16 25 S 0.07 1.42 23.33 -56.49 -1.32 0.11 16 26 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 27 H 0.10 5.61 6.20 -2.92 -0.02 5.60 16 28 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 30 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.11 4.20 7.08 -2.39 -0.02 4.18 16 32 H 0.13 3.89 8.05 -2.39 -0.02 3.87 16 33 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 34 H 0.05 1.64 8.13 -2.39 -0.02 1.63 16 35 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.19 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -65.95 351.73 5.71 -60.24 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 1.06 Total: 27.64 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 3.87 Total: -48.59 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.24 Total: -43.06 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.18 Total: -37.59 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.32 Total: 0.11 kcal Total: -65.95 5.71 -60.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777159462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.207 kcal (2) G-P(sol) polarization free energy of solvation -65.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds