Wall clock time and date at job start Tue Mar 31 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47202 * 2 1 4 4 C 1.53001 * 109.47173 * 119.99451 * 2 1 3 5 5 N 1.46903 * 109.46561 * 65.73292 * 4 2 1 6 6 C 1.46903 * 110.99662 * 211.41705 * 5 4 2 7 7 C 1.50705 * 109.47238 * 71.80324 * 6 5 4 8 8 H 1.07995 * 119.99787 * 5.03263 * 7 6 5 9 9 C 1.37875 * 119.99995 * 185.03426 * 7 6 5 10 10 N 1.31514 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99921 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47154 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47051 * 119.99755 * 11 9 7 14 14 H 1.48501 * 109.47122 * 239.99702 * 11 9 7 15 15 C 1.46895 * 111.00300 * 87.46162 * 5 4 2 16 16 C 1.50695 * 109.47113 * 293.67191 * 15 5 4 17 17 N 1.31869 * 119.61268 * 280.54216 * 16 15 5 18 18 C 1.31840 * 121.75549 * 179.97438 * 17 16 15 19 19 C 1.38362 * 120.77048 * 0.02844 * 18 17 16 20 20 Cl 1.73601 * 120.42657 * 179.97438 * 19 18 17 21 21 C 1.38718 * 119.14745 * 359.95872 * 19 18 17 22 22 C 1.38307 * 119.61319 * 100.52918 * 16 15 5 23 23 Cl 1.73602 * 120.42290 * 359.74291 * 22 16 15 24 24 H 1.09006 * 109.47053 * 64.89193 * 1 2 3 25 25 H 1.08992 * 109.47436 * 184.89372 * 1 2 3 26 26 H 1.08998 * 109.47197 * 304.89774 * 1 2 3 27 27 H 1.08997 * 109.47267 * 239.99976 * 2 1 3 28 28 H 1.09007 * 109.47057 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46886 * 299.99353 * 3 2 1 30 30 H 1.08997 * 109.47554 * 59.99800 * 3 2 1 31 31 H 1.08997 * 109.46857 * 305.73277 * 4 2 1 32 32 H 1.09000 * 109.47356 * 185.72357 * 4 2 1 33 33 H 1.09000 * 109.47169 * 191.79995 * 6 5 4 34 34 H 1.08999 * 109.47112 * 311.80591 * 6 5 4 35 35 H 0.96999 * 119.99753 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.47255 * 173.66815 * 15 5 4 37 37 H 1.09003 * 109.47037 * 53.67224 * 15 5 4 38 38 H 1.07993 * 119.62117 * 180.02562 * 18 17 16 39 39 H 1.08004 * 120.79596 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6664 -2.1403 1.1821 6 6 1.4371 -2.6884 2.5257 7 6 0.1509 -2.1337 3.0817 8 1 -0.4781 -1.5080 2.4660 9 6 -0.2227 -2.4252 4.3765 10 7 0.5430 -3.1876 5.1261 11 14 -1.8167 -1.7370 5.0660 12 1 -2.4903 -0.9148 4.0291 13 1 -2.7068 -2.8563 5.4662 14 1 -1.5197 -0.8926 6.2509 15 6 2.6832 -2.9188 0.4624 16 6 2.7118 -2.4931 -0.9828 17 7 1.7985 -2.9526 -1.8157 18 6 1.7835 -2.6076 -3.0881 19 6 2.7357 -1.7432 -3.5985 20 17 2.7079 -1.2955 -5.2755 21 6 3.7127 -1.2387 -2.7528 22 6 3.6956 -1.6248 -1.4202 23 17 4.8893 -1.0200 -0.3143 24 1 -0.3633 0.4361 -0.9306 25 1 -0.3634 -1.0238 0.0877 26 1 -0.3633 0.5879 0.8428 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.5952 -0.2699 2.1362 32 1 3.1251 -0.6332 1.3021 33 1 1.3694 -3.7748 2.4682 34 1 2.2649 -2.4098 3.1779 35 1 0.2800 -3.3929 6.0369 36 1 2.4396 -3.9795 0.5241 37 1 3.6605 -2.7438 0.9122 38 1 1.0191 -3.0044 -3.7397 39 1 4.4686 -0.5618 -3.1229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777587994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:27 Heat of formation + Delta-G solvation = 21.561810 kcal Electronic energy + Delta-G solvation = -22826.647442 eV Core-core repulsion = 19434.991500 eV Total energy + Delta-G solvation = -3391.655942 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70824 -37.55114 -36.77534 -36.69155 -34.12258 -32.81768 -32.37652 -31.25177 -27.48778 -26.60966 -26.33929 -24.41136 -23.76391 -22.10537 -20.60269 -19.49472 -17.48756 -17.14642 -16.47174 -15.86661 -15.49957 -14.66524 -14.50322 -14.36207 -13.92102 -13.72401 -13.43517 -13.34534 -12.68883 -12.42884 -12.39958 -12.13685 -11.95501 -11.88067 -11.73194 -11.43512 -11.26916 -11.04338 -10.92167 -10.76319 -10.62128 -10.33046 -10.20377 -9.98528 -9.84210 -9.72925 -9.62354 -9.21271 -8.67809 -8.41408 -7.24606 -6.00694 -4.01095 0.64585 0.85286 1.60036 2.03159 3.32281 3.38809 3.40499 3.45699 4.19250 4.38439 4.45198 4.47012 4.83618 4.95788 4.97682 5.34679 5.40366 5.47753 5.53888 5.55681 5.76446 5.88164 5.99868 6.01292 6.13257 6.21320 6.24111 6.35133 6.47811 6.57405 6.64790 6.92320 7.07836 7.24767 7.34031 7.74410 7.85357 8.08917 8.17148 8.52923 9.08195 9.63050 11.09897 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.004114 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.392581 B = 6805.111846 C = 7044.319895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.145 4.145 4 C 0.056 3.944 5 N -0.518 5.518 6 C 0.195 3.805 7 C -0.500 4.500 8 H 0.067 0.933 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.090 3.910 16 C 0.182 3.818 17 N -0.430 5.430 18 C 0.121 3.879 19 C -0.091 4.091 20 Cl -0.054 7.054 21 C -0.062 4.062 22 C -0.076 4.076 23 Cl -0.038 7.038 24 H 0.030 0.970 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.028 0.972 34 H -0.003 1.003 35 H 0.260 0.740 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.169 0.831 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 4.805 -17.317 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.073 4.073 5 N -0.243 5.243 6 C 0.070 3.930 7 C -0.538 4.538 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.039 4.039 16 C 0.043 3.957 17 N -0.139 5.139 18 C -0.037 4.037 19 C -0.121 4.121 20 Cl -0.026 7.026 21 C -0.089 4.089 22 C -0.106 4.106 23 Cl -0.009 7.009 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.186 0.814 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.916 4.195 -17.097 18.914 hybrid contribution 0.662 1.143 0.444 1.394 sum 7.578 5.338 -16.653 19.059 Atomic orbital electron populations 1.21676 0.94833 1.03260 0.99276 1.21252 0.96790 0.94546 0.98563 1.21819 1.00331 0.96950 1.01157 1.22270 0.97435 0.89410 0.98135 1.62049 1.39694 1.01011 1.21506 1.19784 0.96485 0.95346 0.81351 1.21198 1.05343 1.30455 0.96833 0.91477 1.24965 0.97165 0.95472 0.96970 1.69966 1.37660 1.37620 1.08717 0.86495 0.83609 0.78792 0.78868 1.19632 1.21093 1.21241 1.21175 0.96204 1.00188 0.86346 1.21518 0.87142 0.89550 0.97494 1.67947 1.21242 1.22655 1.02033 1.23003 0.95946 0.92685 0.92095 1.21973 1.00035 1.02835 0.87252 1.98379 1.98176 1.91795 1.14207 1.21332 0.98025 0.98599 0.90927 1.21841 0.95986 1.01175 0.91602 1.98384 1.54696 1.86258 1.61564 0.95057 0.90641 0.93303 0.92501 0.93341 0.93527 0.92712 0.89907 0.94927 0.95397 0.98491 0.93065 0.88847 0.93004 0.81396 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.14 37.15 0.34 -1.99 16 2 C -0.09 -1.51 2.66 -90.62 -0.24 -1.75 16 3 C -0.14 -2.04 9.19 37.16 0.34 -1.70 16 4 C 0.06 1.05 3.86 -3.82 -0.01 1.03 16 5 N -0.52 -10.61 3.79 -237.51 -0.90 -11.51 16 6 C 0.19 4.85 4.67 -4.97 -0.02 4.83 16 7 C -0.50 -13.56 8.31 -34.44 -0.29 -13.84 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.24 13.29 55.43 0.74 -25.51 16 11 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.09 1.57 5.04 -4.98 -0.03 1.55 16 16 C 0.18 2.79 4.13 -82.55 -0.34 2.45 16 17 N -0.43 -6.55 10.27 -9.42 -0.10 -6.65 16 18 C 0.12 1.47 10.99 -17.50 -0.19 1.28 16 19 C -0.09 -1.01 6.34 -39.36 -0.25 -1.26 16 20 Cl -0.05 -0.51 28.99 -51.86 -1.50 -2.01 16 21 C -0.06 -0.69 9.70 -39.21 -0.38 -1.08 16 22 C -0.08 -1.00 4.29 -39.36 -0.17 -1.17 16 23 Cl -0.04 -0.48 24.89 -51.86 -1.29 -1.77 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 1.51 7.65 -51.93 -0.40 1.11 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.92 3.95 -51.93 -0.21 0.71 16 28 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.77 7.04 -51.93 -0.37 1.41 16 32 H 0.03 0.58 5.37 -51.93 -0.28 0.30 16 33 H 0.03 0.74 7.81 -51.93 -0.41 0.34 16 34 H 0.00 -0.07 8.05 -51.93 -0.42 -0.49 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.09 1.67 7.86 -51.93 -0.41 1.27 16 37 H 0.05 0.87 6.25 -51.93 -0.32 0.55 16 38 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -28.50 342.80 -9.56 -38.06 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.31 Total: -2.04 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.34 Total: -10.21 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.26 Total: -43.66 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -2.79 Total: -3.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.50 -9.56 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777587994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.617 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds