Wall clock time and date at job start Tue Mar 31 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47202 * 2 1 4 4 C 1.53001 * 109.47173 * 119.99451 * 2 1 3 5 5 N 1.46903 * 109.46561 * 65.73292 * 4 2 1 6 6 C 1.46903 * 110.99662 * 211.41705 * 5 4 2 7 7 C 1.50705 * 109.47238 * 71.80324 * 6 5 4 8 8 H 1.07995 * 119.99787 * 5.03263 * 7 6 5 9 9 C 1.37875 * 119.99995 * 185.03426 * 7 6 5 10 10 N 1.31514 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99921 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47154 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47051 * 119.99755 * 11 9 7 14 14 H 1.48501 * 109.47122 * 239.99702 * 11 9 7 15 15 C 1.46895 * 111.00300 * 87.46162 * 5 4 2 16 16 C 1.50695 * 109.47113 * 293.67191 * 15 5 4 17 17 N 1.31869 * 119.61268 * 280.54216 * 16 15 5 18 18 C 1.31840 * 121.75549 * 179.97438 * 17 16 15 19 19 C 1.38362 * 120.77048 * 0.02844 * 18 17 16 20 20 Cl 1.73601 * 120.42657 * 179.97438 * 19 18 17 21 21 C 1.38718 * 119.14745 * 359.95872 * 19 18 17 22 22 C 1.38307 * 119.61319 * 100.52918 * 16 15 5 23 23 Cl 1.73602 * 120.42290 * 359.74291 * 22 16 15 24 24 H 1.09006 * 109.47053 * 64.89193 * 1 2 3 25 25 H 1.08992 * 109.47436 * 184.89372 * 1 2 3 26 26 H 1.08998 * 109.47197 * 304.89774 * 1 2 3 27 27 H 1.08997 * 109.47267 * 239.99976 * 2 1 3 28 28 H 1.09007 * 109.47057 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46886 * 299.99353 * 3 2 1 30 30 H 1.08997 * 109.47554 * 59.99800 * 3 2 1 31 31 H 1.08997 * 109.46857 * 305.73277 * 4 2 1 32 32 H 1.09000 * 109.47356 * 185.72357 * 4 2 1 33 33 H 1.09000 * 109.47169 * 191.79995 * 6 5 4 34 34 H 1.08999 * 109.47112 * 311.80591 * 6 5 4 35 35 H 0.96999 * 119.99753 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.47255 * 173.66815 * 15 5 4 37 37 H 1.09003 * 109.47037 * 53.67224 * 15 5 4 38 38 H 1.07993 * 119.62117 * 180.02562 * 18 17 16 39 39 H 1.08004 * 120.79596 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6664 -2.1403 1.1821 6 6 1.4371 -2.6884 2.5257 7 6 0.1509 -2.1337 3.0817 8 1 -0.4781 -1.5080 2.4660 9 6 -0.2227 -2.4252 4.3765 10 7 0.5430 -3.1876 5.1261 11 14 -1.8167 -1.7370 5.0660 12 1 -2.4903 -0.9148 4.0291 13 1 -2.7068 -2.8563 5.4662 14 1 -1.5197 -0.8926 6.2509 15 6 2.6832 -2.9188 0.4624 16 6 2.7118 -2.4931 -0.9828 17 7 1.7985 -2.9526 -1.8157 18 6 1.7835 -2.6076 -3.0881 19 6 2.7357 -1.7432 -3.5985 20 17 2.7079 -1.2955 -5.2755 21 6 3.7127 -1.2387 -2.7528 22 6 3.6956 -1.6248 -1.4202 23 17 4.8893 -1.0200 -0.3143 24 1 -0.3633 0.4361 -0.9306 25 1 -0.3634 -1.0238 0.0877 26 1 -0.3633 0.5879 0.8428 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.5952 -0.2699 2.1362 32 1 3.1251 -0.6332 1.3021 33 1 1.3694 -3.7748 2.4682 34 1 2.2649 -2.4098 3.1779 35 1 0.2800 -3.3929 6.0369 36 1 2.4396 -3.9795 0.5241 37 1 3.6605 -2.7438 0.9122 38 1 1.0191 -3.0044 -3.7397 39 1 4.4686 -0.5618 -3.1229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777587994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:26 Heat of formation + Delta-G solvation = 5.797283 kcal Electronic energy + Delta-G solvation = -22827.331043 eV Core-core repulsion = 19434.991500 eV Total energy + Delta-G solvation = -3392.339543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78137 -38.94862 -37.80815 -37.62825 -35.62230 -34.64101 -33.47052 -32.56845 -29.26838 -27.89238 -27.79104 -25.99121 -24.84461 -23.55315 -22.17211 -20.90563 -18.63006 -18.29575 -18.16843 -17.15772 -16.86678 -16.41723 -15.94931 -15.57587 -15.19068 -14.97739 -14.93370 -14.42718 -14.21429 -13.86907 -13.63343 -13.42409 -13.38782 -13.10786 -12.98695 -12.82394 -12.71977 -12.58399 -12.40293 -12.34099 -12.02848 -11.88868 -11.67827 -11.52631 -11.40697 -11.24309 -10.70841 -10.66085 -10.57176 -9.74546 -8.92804 -8.15323 -6.23422 -0.37116 -0.10224 0.66675 1.07972 1.40826 1.42313 1.55086 2.33111 2.44735 3.08674 3.17425 3.28072 3.52292 3.58533 3.84281 3.98352 4.03971 4.19222 4.36874 4.43012 4.51663 4.64089 4.65697 4.75890 4.85350 4.88135 4.96734 5.09284 5.14062 5.16291 5.23731 5.26550 5.35528 5.53250 5.64795 5.74393 6.11478 6.37587 6.60897 6.74402 6.93121 7.45391 8.95181 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.004114 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.392581 B = 6805.111846 C = 7044.319895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.140 4.140 4 C 0.061 3.939 5 N -0.522 5.522 6 C 0.211 3.789 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.960 3.040 12 H -0.265 1.265 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.091 3.909 16 C 0.164 3.836 17 N -0.459 5.459 18 C 0.118 3.882 19 C -0.080 4.080 20 Cl -0.031 7.031 21 C -0.053 4.053 22 C -0.077 4.077 23 Cl -0.037 7.037 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.003 0.997 34 H -0.030 1.030 35 H 0.262 0.738 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.191 0.809 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.908 6.534 -19.757 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.105 4.105 3 C -0.197 4.197 4 C -0.067 4.067 5 N -0.246 5.246 6 C 0.085 3.915 7 C -0.547 4.547 8 H 0.081 0.919 9 C -0.193 4.193 10 N -0.576 5.576 11 Si 0.786 3.214 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.038 4.038 16 C 0.025 3.975 17 N -0.168 5.168 18 C -0.040 4.040 19 C -0.110 4.110 20 Cl -0.002 7.002 21 C -0.079 4.079 22 C -0.107 4.107 23 Cl -0.008 7.008 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.021 0.979 34 H -0.013 1.013 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.208 0.792 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.944 5.935 -19.559 21.587 hybrid contribution 0.700 0.583 1.048 1.388 sum 7.644 6.517 -18.511 21.061 Atomic orbital electron populations 1.21595 0.95634 1.01245 1.00012 1.21208 0.96005 0.95972 0.97300 1.21775 1.00990 0.95006 1.01978 1.22241 0.97863 0.88280 0.98291 1.61952 1.41677 1.02153 1.18811 1.19402 0.94899 0.93776 0.83413 1.21448 1.05971 1.30141 0.97114 0.91871 1.25792 1.00462 0.95739 0.97353 1.70084 1.39492 1.38892 1.09109 0.85464 0.79542 0.78207 0.78217 1.18945 1.20625 1.20579 1.21085 0.95338 0.99118 0.88240 1.21003 0.88859 0.91506 0.96086 1.67835 1.21869 1.23653 1.03484 1.23358 0.96721 0.92693 0.91220 1.21996 0.99081 1.01593 0.88300 1.98399 1.98057 1.91459 1.12259 1.21608 0.98295 0.98230 0.89800 1.21774 0.95509 1.00904 0.92511 1.98386 1.54487 1.86131 1.61802 0.92782 0.93708 0.94282 0.91629 0.92294 0.91517 0.93102 0.93090 0.93897 0.97924 1.01259 0.92886 0.90260 0.92620 0.79182 0.80397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.14 71.98 0.66 -3.72 16 2 C -0.09 -2.73 2.66 -10.79 -0.03 -2.75 16 3 C -0.14 -3.61 9.19 71.98 0.66 -2.95 16 4 C 0.06 2.35 3.86 86.30 0.33 2.68 16 5 N -0.52 -22.25 3.79 -905.36 -3.43 -25.68 16 6 C 0.21 11.13 4.67 85.56 0.40 11.52 16 7 C -0.51 -28.61 8.31 25.60 0.21 -28.39 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.00 0.24 5.46 84.65 0.46 0.70 16 10 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 11 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 C 0.09 3.31 5.04 85.56 0.43 3.74 16 16 C 0.16 4.96 4.13 42.57 0.18 5.13 16 17 N -0.46 -13.66 10.27 -183.72 -1.89 -15.55 16 18 C 0.12 2.62 10.99 84.72 0.93 3.55 16 19 C -0.08 -1.51 6.34 22.41 0.14 -1.37 16 20 Cl -0.03 -0.46 28.99 -2.72 -0.08 -0.54 16 21 C -0.05 -1.02 9.70 22.51 0.22 -0.80 16 22 C -0.08 -1.90 4.29 22.41 0.10 -1.80 16 23 Cl -0.04 -0.89 24.89 -2.72 -0.07 -0.96 16 24 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.04 1.80 7.65 -2.39 -0.02 1.78 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 2.00 3.95 -2.39 -0.01 1.99 16 28 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 2.26 7.04 -2.39 -0.02 2.24 16 32 H 0.04 1.53 5.37 -2.39 -0.01 1.52 16 33 H 0.00 0.15 7.81 -2.39 -0.02 0.13 16 34 H -0.03 -1.73 8.05 -2.39 -0.02 -1.75 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.08 3.03 7.86 -2.38 -0.02 3.02 16 37 H 0.06 1.95 6.25 -2.39 -0.01 1.93 16 38 H 0.19 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -63.10 342.80 2.60 -60.50 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.05 Total: 5.77 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.69 Total: -14.46 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -5.03 Total: -97.08 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.15 Total: -1.50 kcal Total: -63.10 2.60 -60.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777587994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.302 kcal (2) G-P(sol) polarization free energy of solvation -63.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds