Wall clock time and date at job start Tue Mar 31 2020 11:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47051 * 90.00191 * 3 2 1 5 5 H 1.48500 * 109.47071 * 210.00211 * 3 2 1 6 6 H 1.48504 * 109.46997 * 330.00317 * 3 2 1 7 7 C 1.40294 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 159.68560 * 7 2 1 9 9 C 1.40861 * 120.00053 * 339.67310 * 7 2 1 10 10 C 1.40703 * 120.33362 * 325.74709 * 9 7 2 11 11 C 1.37598 * 119.88779 * 179.97438 * 10 9 7 12 12 C 1.38842 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.68093 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08627 * 359.73704 * 13 12 11 15 15 C 1.47288 * 120.28603 * 180.27692 * 14 13 12 16 16 O 1.21526 * 119.99628 * 174.84553 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.83939 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46867 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.46721 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47152 * 180.02562 * 20 19 18 22 22 C 1.38424 * 122.53934 * 269.73953 * 21 20 19 23 23 C 1.33389 * 114.92184 * 179.75603 * 22 21 20 24 24 S 1.75887 * 109.59273 * 0.47754 * 23 22 21 25 25 C 1.33393 * 122.54309 * 90.02037 * 21 20 19 26 26 H 0.97001 * 119.99911 * 175.29351 * 1 2 3 27 27 H 1.07997 * 120.05864 * 359.95450 * 10 9 7 28 28 H 1.07994 * 119.70936 * 179.97438 * 11 10 9 29 29 H 1.07997 * 119.66024 * 179.97438 * 12 11 10 30 30 H 1.08000 * 119.95667 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 32 32 H 1.09000 * 109.47066 * 60.00012 * 18 17 15 33 33 H 1.08999 * 109.47037 * 299.99623 * 19 18 17 34 34 H 1.09002 * 109.47003 * 59.99669 * 19 18 17 35 35 H 1.09003 * 109.47602 * 299.99611 * 20 19 18 36 36 H 1.09002 * 109.47577 * 60.00113 * 20 19 18 37 37 H 1.08000 * 122.53986 * 359.97438 * 22 21 20 38 38 H 1.08003 * 125.20586 * 180.20238 * 23 22 21 39 39 H 1.08004 * 125.20029 * 0.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 2.4876 2.0464 1.4001 5 1 3.5376 1.4402 -0.7001 6 1 1.4375 2.6527 -0.7000 7 6 2.0076 -1.2150 -0.0005 8 1 3.0372 -1.2440 -0.3253 9 6 1.3691 -2.3971 0.4227 10 6 0.4104 -2.3575 1.4518 11 6 -0.2081 -3.5178 1.8576 12 6 0.1054 -4.7315 1.2607 13 6 1.0441 -4.7979 0.2485 14 6 1.6838 -3.6399 -0.1877 15 6 2.6805 -3.7048 -1.2702 16 8 3.1664 -2.6817 -1.7107 17 8 3.0538 -4.8989 -1.7721 18 6 4.0409 -4.8869 -2.8369 19 6 4.3367 -6.3230 -3.2742 20 6 5.3763 -6.3103 -4.3967 21 6 5.6673 -7.7246 -4.8279 22 6 6.6697 -8.4869 -4.2532 23 6 6.7915 -9.7199 -4.7474 24 16 5.6016 -9.9659 -6.0191 25 6 4.9820 -8.3350 -5.7960 26 1 -0.4850 -0.8372 -0.0689 27 1 0.1606 -1.4182 1.9226 28 1 -0.9432 -3.4841 2.6481 29 1 -0.3889 -5.6330 1.5912 30 1 1.2787 -5.7482 -0.2079 31 1 3.6541 -4.3210 -3.6844 32 1 4.9581 -4.4209 -2.4769 33 1 4.7236 -6.8885 -2.4265 34 1 3.4196 -6.7895 -3.6340 35 1 4.9890 -5.7449 -5.2443 36 1 6.2935 -5.8437 -4.0373 37 1 7.3027 -8.1130 -3.4622 38 1 7.5136 -10.4533 -4.4201 39 1 4.1710 -7.8949 -6.3573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783116981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:03 Heat of formation + Delta-G solvation = -54.559758 kcal Electronic energy + Delta-G solvation = -22405.051838 eV Core-core repulsion = 18982.278823 eV Total energy + Delta-G solvation = -3422.773016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.46526 -38.67160 -37.50379 -35.55327 -34.04411 -33.50107 -30.31444 -29.71100 -29.41364 -26.79877 -25.35883 -23.56106 -22.56246 -21.45879 -21.04411 -19.84389 -18.90314 -18.03592 -17.81606 -16.64020 -16.07064 -15.82227 -15.32200 -14.78089 -14.34941 -14.12179 -13.98602 -13.77754 -13.36832 -13.20340 -12.98596 -12.76680 -12.44958 -12.23286 -12.14071 -11.95192 -11.78931 -11.27385 -11.16878 -11.01066 -10.92548 -10.82667 -10.74162 -10.43860 -10.23476 -9.89340 -9.75771 -9.15564 -9.03887 -8.88939 -8.59095 -7.87423 -7.69848 -7.28006 -4.58959 0.77820 1.43725 1.75579 2.08434 2.45693 2.69782 3.14485 3.25614 3.35931 3.54237 3.78987 3.96741 4.52927 4.62498 4.74916 4.92775 5.09924 5.22757 5.28802 5.35365 5.38944 5.47980 5.57376 5.71244 5.80347 5.97431 6.01298 6.02354 6.13335 6.18816 6.25220 6.31883 6.49394 6.70903 6.90959 7.17683 7.32027 7.45794 7.54968 7.70431 7.79652 8.04180 8.12600 8.59890 8.72089 9.02856 9.92827 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002484 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.607620 B =11270.804660 C =12321.571694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.032 3.968 3 Si 1.073 2.927 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.121 3.879 10 C -0.201 4.201 11 C -0.070 4.070 12 C -0.261 4.261 13 C -0.023 4.023 14 C -0.254 4.254 15 C 0.503 3.497 16 O -0.515 6.515 17 O -0.371 6.371 18 C 0.069 3.931 19 C -0.111 4.111 20 C -0.059 4.059 21 C -0.096 4.096 22 C -0.128 4.128 23 C -0.213 4.213 24 S 0.083 5.917 25 C -0.209 4.209 26 H 0.300 0.700 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.450 -13.584 -8.335 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.191 4.191 3 Si 0.896 3.104 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.122 0.878 9 C 0.117 3.883 10 C -0.220 4.220 11 C -0.089 4.089 12 C -0.281 4.281 13 C -0.041 4.041 14 C -0.257 4.257 15 C 0.354 3.646 16 O -0.406 6.406 17 O -0.290 6.290 18 C -0.005 4.005 19 C -0.149 4.149 20 C -0.099 4.099 21 C -0.108 4.108 22 C -0.159 4.159 23 C -0.348 4.348 24 S 0.347 5.653 25 C -0.345 4.345 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.159 0.841 38 H 0.181 0.819 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.999 -12.878 -9.430 18.323 hybrid contribution 0.491 -0.663 0.821 1.164 sum 9.490 -13.541 -8.609 18.642 Atomic orbital electron populations 1.70361 1.08255 1.34473 1.27733 1.27320 0.95671 1.04764 0.91344 0.83512 0.75721 0.72989 0.78164 1.19886 1.19693 1.19989 1.21223 1.01903 0.92160 1.33862 0.87765 1.17478 0.89832 0.91636 0.89374 1.21198 1.03172 0.97287 1.00349 1.20806 0.97296 0.93154 0.97647 1.20332 1.06332 0.96758 1.04646 1.20909 0.93153 0.96134 0.93926 1.18691 1.07952 0.95710 1.03370 1.21313 0.81205 0.80179 0.81906 1.90736 1.54832 1.34682 1.60334 1.86562 1.56618 1.35486 1.50316 1.22756 0.91416 0.96916 0.89452 1.21493 0.99283 0.95821 0.98266 1.20235 0.99647 0.91518 0.98476 1.18925 0.96818 0.97896 0.97146 1.20158 0.99847 0.93698 1.02179 1.25590 1.05043 1.01288 1.02877 1.84260 1.30359 1.13824 1.36898 1.25505 1.06431 0.97620 1.04917 0.88629 0.87320 0.88620 0.88573 0.87800 0.91955 0.91947 0.90812 0.90887 0.90553 0.90414 0.84095 0.81923 0.81811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.63 12.60 55.57 0.70 -19.93 16 2 C 0.03 0.81 5.01 -17.30 -0.09 0.72 16 3 Si 1.07 21.98 29.98 -169.99 -5.10 16.89 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.47 -12.59 7.62 -37.82 -0.29 -12.88 16 8 H 0.10 2.93 5.99 -52.49 -0.31 2.62 16 9 C 0.12 3.21 5.16 -106.54 -0.55 2.66 16 10 C -0.20 -4.95 7.90 -38.88 -0.31 -5.26 16 11 C -0.07 -1.54 10.01 -39.59 -0.40 -1.94 16 12 C -0.26 -5.57 10.03 -39.37 -0.39 -5.96 16 13 C -0.02 -0.51 9.60 -39.20 -0.38 -0.88 16 14 C -0.25 -6.39 5.92 -104.39 -0.62 -7.00 16 15 C 0.50 12.20 7.85 34.41 0.27 12.47 16 16 O -0.52 -13.54 13.38 -19.28 -0.26 -13.80 16 17 O -0.37 -7.53 9.48 -40.78 -0.39 -7.92 16 18 C 0.07 1.10 5.48 37.16 0.20 1.31 16 19 C -0.11 -1.34 5.58 -26.73 -0.15 -1.49 16 20 C -0.06 -0.58 5.47 -27.89 -0.15 -0.73 16 21 C -0.10 -0.95 5.06 -106.25 -0.54 -1.48 16 22 C -0.13 -1.19 9.98 -41.21 -0.41 -1.60 16 23 C -0.21 -1.79 11.23 29.04 0.33 -1.47 16 24 S 0.08 0.71 23.34 -107.50 -2.51 -1.80 16 25 C -0.21 -1.97 10.98 29.04 0.32 -1.65 16 26 H 0.30 8.07 6.62 -40.82 -0.27 7.80 16 27 H 0.11 2.70 6.99 -52.49 -0.37 2.33 16 28 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.10 2.08 7.61 -52.49 -0.40 1.68 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -29.35 349.28 -10.23 -39.58 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.79 Total: 6.91 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.15 Total: -25.20 kcal Atomic # 7 Polarization: -20.63 SS G_CDS: 0.70 Total: -19.93 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.64 Total: -21.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.10 Total: 16.89 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.35 -10.23 -39.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783116981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.978 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds