Wall clock time and date at job start Tue Mar 31 2020 11:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47051 * 90.00191 * 3 2 1 5 5 H 1.48500 * 109.47071 * 210.00211 * 3 2 1 6 6 H 1.48504 * 109.46997 * 330.00317 * 3 2 1 7 7 C 1.40294 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 159.68560 * 7 2 1 9 9 C 1.40861 * 120.00053 * 339.67310 * 7 2 1 10 10 C 1.40703 * 120.33362 * 325.74709 * 9 7 2 11 11 C 1.37598 * 119.88779 * 179.97438 * 10 9 7 12 12 C 1.38842 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.68093 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08627 * 359.73704 * 13 12 11 15 15 C 1.47288 * 120.28603 * 180.27692 * 14 13 12 16 16 O 1.21526 * 119.99628 * 174.84553 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.83939 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46867 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.46721 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47152 * 180.02562 * 20 19 18 22 22 C 1.38424 * 122.53934 * 269.73953 * 21 20 19 23 23 C 1.33389 * 114.92184 * 179.75603 * 22 21 20 24 24 S 1.75887 * 109.59273 * 0.47754 * 23 22 21 25 25 C 1.33393 * 122.54309 * 90.02037 * 21 20 19 26 26 H 0.97001 * 119.99911 * 175.29351 * 1 2 3 27 27 H 1.07997 * 120.05864 * 359.95450 * 10 9 7 28 28 H 1.07994 * 119.70936 * 179.97438 * 11 10 9 29 29 H 1.07997 * 119.66024 * 179.97438 * 12 11 10 30 30 H 1.08000 * 119.95667 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 32 32 H 1.09000 * 109.47066 * 60.00012 * 18 17 15 33 33 H 1.08999 * 109.47037 * 299.99623 * 19 18 17 34 34 H 1.09002 * 109.47003 * 59.99669 * 19 18 17 35 35 H 1.09003 * 109.47602 * 299.99611 * 20 19 18 36 36 H 1.09002 * 109.47577 * 60.00113 * 20 19 18 37 37 H 1.08000 * 122.53986 * 359.97438 * 22 21 20 38 38 H 1.08003 * 125.20586 * 180.20238 * 23 22 21 39 39 H 1.08004 * 125.20029 * 0.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 2.4876 2.0464 1.4001 5 1 3.5376 1.4402 -0.7001 6 1 1.4375 2.6527 -0.7000 7 6 2.0076 -1.2150 -0.0005 8 1 3.0372 -1.2440 -0.3253 9 6 1.3691 -2.3971 0.4227 10 6 0.4104 -2.3575 1.4518 11 6 -0.2081 -3.5178 1.8576 12 6 0.1054 -4.7315 1.2607 13 6 1.0441 -4.7979 0.2485 14 6 1.6838 -3.6399 -0.1877 15 6 2.6805 -3.7048 -1.2702 16 8 3.1664 -2.6817 -1.7107 17 8 3.0538 -4.8989 -1.7721 18 6 4.0409 -4.8869 -2.8369 19 6 4.3367 -6.3230 -3.2742 20 6 5.3763 -6.3103 -4.3967 21 6 5.6673 -7.7246 -4.8279 22 6 6.6697 -8.4869 -4.2532 23 6 6.7915 -9.7199 -4.7474 24 16 5.6016 -9.9659 -6.0191 25 6 4.9820 -8.3350 -5.7960 26 1 -0.4850 -0.8372 -0.0689 27 1 0.1606 -1.4182 1.9226 28 1 -0.9432 -3.4841 2.6481 29 1 -0.3889 -5.6330 1.5912 30 1 1.2787 -5.7482 -0.2079 31 1 3.6541 -4.3210 -3.6844 32 1 4.9581 -4.4209 -2.4769 33 1 4.7236 -6.8885 -2.4265 34 1 3.4196 -6.7895 -3.6340 35 1 4.9890 -5.7449 -5.2443 36 1 6.2935 -5.8437 -4.0373 37 1 7.3027 -8.1130 -3.4622 38 1 7.5136 -10.4533 -4.4201 39 1 4.1710 -7.8949 -6.3573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783116981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:03 Heat of formation + Delta-G solvation = -67.129594 kcal Electronic energy + Delta-G solvation = -22405.596907 eV Core-core repulsion = 18982.278823 eV Total energy + Delta-G solvation = -3423.318085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23846 -39.52885 -39.19957 -37.28018 -35.87535 -34.61069 -32.06310 -31.34148 -30.53287 -27.92745 -27.12952 -24.86302 -23.85267 -22.92201 -22.47304 -21.61094 -19.92561 -19.61927 -18.60999 -18.30946 -17.50853 -17.41795 -16.60313 -16.28901 -15.98359 -15.64975 -15.49644 -15.10946 -14.50227 -14.46716 -14.15262 -14.06795 -13.87919 -13.66883 -13.24872 -13.12667 -12.98330 -12.82620 -12.73632 -12.53112 -12.29690 -12.10914 -11.98250 -11.97258 -11.63836 -11.55366 -11.38762 -11.00306 -10.77559 -9.73990 -9.71200 -9.58233 -9.28707 -9.22911 -6.57611 0.09691 0.21262 0.77774 0.86476 1.08398 1.46550 1.61372 1.68784 1.77172 1.92135 2.01483 2.27801 2.65107 3.44822 3.76480 3.85705 4.08589 4.13639 4.26764 4.28487 4.30007 4.37460 4.41200 4.55221 4.60340 4.68724 4.78226 4.82152 4.87531 4.97840 5.04527 5.14727 5.19654 5.35422 5.49093 5.53493 5.58873 5.60978 5.67449 5.80758 5.90788 6.13917 6.25500 6.67654 6.76723 7.17868 7.95105 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002484 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.607620 B =11270.804660 C =12321.571694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.000 4.000 3 Si 1.118 2.882 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.222 4.222 11 C -0.062 4.062 12 C -0.246 4.246 13 C -0.026 4.026 14 C -0.279 4.279 15 C 0.502 3.498 16 O -0.545 6.545 17 O -0.367 6.367 18 C 0.063 3.937 19 C -0.096 4.096 20 C -0.052 4.052 21 C -0.107 4.107 22 C -0.144 4.144 23 C -0.213 4.213 24 S 0.091 5.909 25 C -0.221 4.221 26 H 0.285 0.715 27 H 0.097 0.903 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.152 0.848 38 H 0.184 0.816 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 -15.551 -8.080 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.217 4.217 3 Si 0.935 3.065 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.531 4.531 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.241 4.241 11 C -0.081 4.081 12 C -0.265 4.265 13 C -0.044 4.044 14 C -0.282 4.282 15 C 0.354 3.646 16 O -0.438 6.438 17 O -0.285 6.285 18 C -0.011 4.011 19 C -0.134 4.134 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.174 4.174 23 C -0.348 4.348 24 S 0.355 5.645 25 C -0.356 4.356 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.169 0.831 38 H 0.202 0.798 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.111 -14.891 -9.171 19.719 hybrid contribution 0.451 -0.358 0.713 0.917 sum 9.562 -15.249 -8.457 19.887 Atomic orbital electron populations 1.70469 1.08617 1.33342 1.30359 1.28559 0.95788 1.07405 0.89935 0.82981 0.74513 0.69658 0.79322 1.17736 1.19746 1.19045 1.21172 1.01402 0.93701 1.36871 0.90001 1.17860 0.90521 0.92267 0.89880 1.21198 1.04129 0.98137 1.00668 1.21238 0.96769 0.92349 0.97734 1.20857 1.04791 0.97952 1.02898 1.21228 0.92858 0.96172 0.94181 1.19078 1.08740 0.96438 1.03926 1.21341 0.80839 0.80726 0.81720 1.90715 1.55863 1.35982 1.61238 1.86521 1.57427 1.33262 1.51276 1.23138 0.90221 0.99711 0.88045 1.21425 1.00071 0.92834 0.99072 1.20165 0.99185 0.92129 0.97752 1.18977 0.97485 0.97790 0.97730 1.20344 1.00168 0.94090 1.02832 1.25914 1.05071 1.01494 1.02332 1.84240 1.30255 1.13131 1.36872 1.25740 1.06710 0.98225 1.04974 0.90230 0.88454 0.85024 0.84398 0.85271 0.92203 0.91969 0.90579 0.90807 0.90002 0.89680 0.83085 0.79838 0.80938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.68 12.60 21.88 0.28 -43.40 16 2 C 0.00 0.00 5.01 85.37 0.43 0.43 16 3 Si 1.12 45.36 29.98 68.60 2.06 47.42 16 4 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 7 C -0.50 -28.58 7.62 23.41 0.18 -28.40 16 8 H 0.08 4.89 5.99 -2.91 -0.02 4.87 16 9 C 0.10 5.37 5.16 -21.10 -0.11 5.26 16 10 C -0.22 -11.03 7.90 22.72 0.18 -10.85 16 11 C -0.06 -2.60 10.01 22.26 0.22 -2.37 16 12 C -0.25 -9.62 10.03 22.41 0.22 -9.39 16 13 C -0.03 -1.12 9.60 22.52 0.22 -0.90 16 14 C -0.28 -14.13 5.92 -19.71 -0.12 -14.24 16 15 C 0.50 24.85 7.85 70.20 0.55 25.40 16 16 O -0.54 -29.79 13.38 19.75 0.26 -29.52 16 17 O -0.37 -14.80 9.48 -57.15 -0.54 -15.34 16 18 C 0.06 1.98 5.48 71.98 0.39 2.38 16 19 C -0.10 -2.21 5.58 30.59 0.17 -2.04 16 20 C -0.05 -0.97 5.47 29.85 0.16 -0.80 16 21 C -0.11 -1.96 5.06 -20.92 -0.11 -2.06 16 22 C -0.14 -2.41 9.98 21.22 0.21 -2.20 16 23 C -0.21 -3.15 11.23 66.72 0.75 -2.40 16 24 S 0.09 1.41 23.34 -56.49 -1.32 0.09 16 25 C -0.22 -3.83 10.98 66.72 0.73 -3.10 16 26 H 0.29 15.98 6.62 -92.71 -0.61 15.37 16 27 H 0.10 4.97 6.99 -2.91 -0.02 4.95 16 28 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.13 4.80 7.61 -2.91 -0.02 4.77 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 36 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -65.41 349.28 6.04 -59.37 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 1.21 Total: 26.70 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 4.09 Total: -45.32 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.28 Total: -43.40 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.28 Total: -44.86 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.06 Total: 47.42 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.09 kcal Total: -65.41 6.04 -59.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783116981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.764 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds