Wall clock time and date at job start Tue Mar 31 2020 11:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 119.99881 * 2 1 4 4 H 1.48493 * 109.47016 * 274.66386 * 3 2 1 5 5 H 1.48502 * 109.47146 * 34.66564 * 3 2 1 6 6 H 1.48500 * 109.47267 * 154.66281 * 3 2 1 7 7 C 1.39948 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00093 * 162.22703 * 7 2 1 9 9 C 1.41396 * 119.99907 * 342.24027 * 7 2 1 10 10 C 1.40709 * 120.24635 * 155.28464 * 9 7 2 11 11 C 1.37617 * 119.74723 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24908 * 0.02622 * 11 10 9 13 13 C 1.50701 * 119.75252 * 179.97438 * 12 11 10 14 14 O 1.45197 * 109.46935 * 90.00042 * 13 12 11 15 15 C 1.34760 * 116.99603 * 180.02562 * 14 13 12 16 16 O 1.21504 * 119.99882 * 359.97438 * 15 14 13 17 17 C 1.47401 * 119.99936 * 179.97438 * 15 14 13 18 18 C 1.39787 * 120.18496 * 0.02899 * 17 15 14 19 19 C 1.37955 * 119.87437 * 179.97438 * 18 17 15 20 20 F 1.35110 * 119.87195 * 179.97438 * 19 18 17 21 21 C 1.38742 * 120.25829 * 359.97438 * 19 18 17 22 22 C 1.38056 * 120.37853 * 359.71989 * 21 19 18 23 23 C 1.38685 * 120.11167 * 0.55768 * 22 21 19 24 24 O 1.35686 * 120.12141 * 179.72220 * 23 22 21 25 25 C 1.38641 * 120.49916 * 0.24693 * 12 11 10 26 26 C 1.37620 * 120.24817 * 359.45219 * 25 12 11 27 27 H 0.97001 * 120.00529 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.12934 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.88000 * 180.02562 * 11 10 9 30 30 H 1.08998 * 109.47020 * 329.99516 * 13 12 11 31 31 H 1.08996 * 109.46821 * 209.99879 * 13 12 11 32 32 H 1.07996 * 120.06071 * 359.95095 * 18 17 15 33 33 H 1.08006 * 119.81009 * 180.02562 * 21 19 18 34 34 H 1.07998 * 119.94297 * 180.27865 * 22 21 19 35 35 H 0.96699 * 113.99815 * 269.72048 * 24 23 22 36 36 H 1.07999 * 119.87698 * 179.70531 * 25 12 11 37 37 H 1.08000 * 120.12920 * 180.27762 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4924 2.6222 0.7964 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2119 0.0005 8 1 3.0493 -1.2344 -0.2849 9 6 1.3516 -2.4071 0.3746 10 6 1.8218 -3.6493 -0.0900 11 6 1.1748 -4.8061 0.2800 12 6 0.0634 -4.7508 1.1069 13 6 -0.6369 -6.0246 1.5046 14 8 -0.0504 -6.5370 2.7300 15 6 -0.5662 -7.6798 3.2239 16 8 -1.4814 -8.2325 2.6466 17 6 -0.0203 -8.2592 4.4645 18 6 1.0321 -7.6261 5.1321 19 6 1.5378 -8.1737 6.2929 20 9 2.5554 -7.5621 6.9379 21 6 1.0056 -9.3501 6.8007 22 6 -0.0380 -9.9807 6.1534 23 6 -0.5545 -9.4470 4.9822 24 8 -1.5765 -10.0697 4.3428 25 6 -0.4121 -3.5321 1.5660 26 6 0.2229 -2.3630 1.2138 27 1 -0.4851 0.8400 0.0004 28 1 2.6872 -3.6947 -0.7346 29 1 1.5341 -5.7607 -0.0750 30 1 -0.5250 -6.7637 0.7114 31 1 -1.6957 -5.8219 1.6657 32 1 1.4488 -6.7103 4.7396 33 1 1.4068 -9.7722 7.7103 34 1 -0.4499 -10.8937 6.5573 35 1 -1.2916 -10.7175 3.6838 36 1 -1.2815 -3.5004 2.2059 37 1 -0.1465 -1.4151 1.5762 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785357197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:37 Heat of formation + Delta-G solvation = -131.062069 kcal Electronic energy + Delta-G solvation = -24424.725434 eV Core-core repulsion = 20432.421853 eV Total energy + Delta-G solvation = -3992.303581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.12953 -40.66319 -39.19877 -37.64843 -36.83901 -35.93612 -33.89032 -32.04564 -30.71741 -29.67722 -29.38836 -27.29563 -24.93624 -23.70517 -22.89224 -21.14127 -21.05881 -20.07222 -18.71517 -18.26437 -17.41427 -17.37656 -16.38259 -16.25534 -15.95775 -15.76763 -15.57616 -15.29995 -14.52460 -14.22715 -13.97724 -13.84636 -13.77301 -13.38664 -12.79185 -12.50529 -12.44464 -12.12112 -12.06239 -12.03600 -11.57714 -11.28560 -11.16648 -11.12400 -10.65797 -10.64251 -10.21894 -10.18376 -9.71599 -9.59073 -9.48884 -9.23112 -8.87905 -7.58402 -7.47988 -6.88957 -4.48215 0.25765 0.70676 2.37351 2.42538 2.90062 2.98922 3.01834 3.06791 3.23908 3.29338 3.79793 3.84481 3.87143 4.30598 4.45507 4.54528 4.82675 4.97429 5.28821 5.47498 5.54492 5.58788 5.64201 5.65432 5.68093 5.83711 6.07847 6.22968 6.29666 6.30957 6.73861 6.85581 6.95729 7.16042 7.24273 7.34093 7.49698 7.71434 7.94012 7.96393 7.99086 8.17282 8.51955 8.76690 8.84726 10.05145 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.002694 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.774398 B =10392.888152 C =11320.927883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.238 4.238 13 C 0.138 3.862 14 O -0.347 6.347 15 C 0.500 3.500 16 O -0.496 6.496 17 C -0.123 4.123 18 C -0.080 4.080 19 C 0.077 3.923 20 F -0.133 7.133 21 C -0.107 4.107 22 C -0.132 4.132 23 C 0.161 3.839 24 O -0.475 6.475 25 C -0.075 4.075 26 C -0.170 4.170 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.922 -15.484 10.587 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.239 4.239 13 C 0.066 3.934 14 O -0.263 6.263 15 C 0.344 3.656 16 O -0.386 6.386 17 C -0.125 4.125 18 C -0.099 4.099 19 C 0.058 3.942 20 F -0.111 7.111 21 C -0.126 4.126 22 C -0.151 4.151 23 C 0.114 3.886 24 O -0.286 6.286 25 C -0.093 4.093 26 C -0.189 4.189 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.177 0.823 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.257 0.743 36 H 0.107 0.893 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.115 -15.072 10.717 18.494 hybrid contribution 0.645 0.624 -0.332 0.957 sum 0.760 -14.447 10.385 17.809 Atomic orbital electron populations 1.69820 1.07700 1.29563 1.33895 1.25977 0.94762 1.01571 0.92059 0.86276 0.80806 0.80409 0.79170 1.19450 1.19905 1.18279 1.19679 0.98226 0.91250 1.39294 0.90149 1.17691 0.90758 0.92088 0.87802 1.20948 1.03960 0.92792 1.07300 1.20382 0.94282 0.96613 0.96841 1.18647 1.03433 0.91419 1.10386 1.21761 0.96096 0.93852 0.81665 1.86763 1.59719 1.37102 1.42755 1.20766 0.80753 0.80046 0.84073 1.90838 1.27417 1.61013 1.59330 1.19583 0.98961 0.97932 0.95975 1.21528 0.94573 1.00705 0.93086 1.17523 0.89420 0.93825 0.93412 1.91549 1.56780 1.82309 1.80499 1.21261 0.96486 0.94020 1.00814 1.21232 0.96509 1.01574 0.95776 1.18488 0.87088 0.90868 0.92118 1.84775 1.28954 1.58358 1.56529 1.20547 0.98073 0.92555 0.98147 1.21296 0.99419 0.96743 1.01491 0.90609 0.88702 0.89302 0.91931 0.91817 0.82277 0.83688 0.83452 0.74343 0.89288 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.73 10.97 55.55 0.61 -19.12 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.12 3.11 5.57 -106.82 -0.60 2.51 16 10 C -0.23 -5.53 9.80 -38.88 -0.38 -5.91 16 11 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 12 C -0.24 -5.19 5.54 -104.33 -0.58 -5.77 16 13 C 0.14 2.60 5.59 36.01 0.20 2.80 16 14 O -0.35 -6.25 9.45 -40.66 -0.38 -6.63 16 15 C 0.50 8.15 7.89 34.46 0.27 8.42 16 16 O -0.50 -8.85 14.95 -26.60 -0.40 -9.25 16 17 C -0.12 -1.61 5.88 -104.87 -0.62 -2.23 16 18 C -0.08 -0.97 9.59 -39.11 -0.37 -1.34 16 19 C 0.08 0.81 7.28 -39.50 -0.29 0.53 16 20 F -0.13 -1.51 17.26 2.25 0.04 -1.47 16 21 C -0.11 -0.86 10.01 -39.46 -0.39 -1.25 16 22 C -0.13 -1.06 9.97 -39.48 -0.39 -1.45 16 23 C 0.16 1.75 6.72 -38.70 -0.26 1.49 16 24 O -0.47 -5.19 11.57 -40.66 -0.47 -5.66 16 25 C -0.07 -1.73 9.67 -39.66 -0.38 -2.11 16 26 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 27 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 28 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 31 H 0.06 1.17 8.07 -51.93 -0.42 0.76 16 32 H 0.16 2.01 7.61 -52.49 -0.40 1.61 16 33 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.40 2.68 9.06 45.56 0.41 3.09 16 36 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.12 3.12 6.18 -52.49 -0.32 2.80 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -29.54 336.67 -8.32 -37.86 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -2.81 Total: 7.27 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -4.95 Total: -21.10 kcal Atomic # 7 Polarization: -19.73 SS G_CDS: 0.61 Total: -19.12 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.25 Total: -21.53 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.54 -8.32 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785357197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.202 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds