Wall clock time and date at job start Tue Mar 31 2020 11:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 119.99881 * 2 1 4 4 H 1.48493 * 109.47016 * 274.66386 * 3 2 1 5 5 H 1.48502 * 109.47146 * 34.66564 * 3 2 1 6 6 H 1.48500 * 109.47267 * 154.66281 * 3 2 1 7 7 C 1.39948 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00093 * 162.22703 * 7 2 1 9 9 C 1.41396 * 119.99907 * 342.24027 * 7 2 1 10 10 C 1.40709 * 120.24635 * 155.28464 * 9 7 2 11 11 C 1.37617 * 119.74723 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24908 * 0.02622 * 11 10 9 13 13 C 1.50701 * 119.75252 * 179.97438 * 12 11 10 14 14 O 1.45197 * 109.46935 * 90.00042 * 13 12 11 15 15 C 1.34760 * 116.99603 * 180.02562 * 14 13 12 16 16 O 1.21504 * 119.99882 * 359.97438 * 15 14 13 17 17 C 1.47401 * 119.99936 * 179.97438 * 15 14 13 18 18 C 1.39787 * 120.18496 * 0.02899 * 17 15 14 19 19 C 1.37955 * 119.87437 * 179.97438 * 18 17 15 20 20 F 1.35110 * 119.87195 * 179.97438 * 19 18 17 21 21 C 1.38742 * 120.25829 * 359.97438 * 19 18 17 22 22 C 1.38056 * 120.37853 * 359.71989 * 21 19 18 23 23 C 1.38685 * 120.11167 * 0.55768 * 22 21 19 24 24 O 1.35686 * 120.12141 * 179.72220 * 23 22 21 25 25 C 1.38641 * 120.49916 * 0.24693 * 12 11 10 26 26 C 1.37620 * 120.24817 * 359.45219 * 25 12 11 27 27 H 0.97001 * 120.00529 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.12934 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.88000 * 180.02562 * 11 10 9 30 30 H 1.08998 * 109.47020 * 329.99516 * 13 12 11 31 31 H 1.08996 * 109.46821 * 209.99879 * 13 12 11 32 32 H 1.07996 * 120.06071 * 359.95095 * 18 17 15 33 33 H 1.08006 * 119.81009 * 180.02562 * 21 19 18 34 34 H 1.07998 * 119.94297 * 180.27865 * 22 21 19 35 35 H 0.96699 * 113.99815 * 269.72048 * 24 23 22 36 36 H 1.07999 * 119.87698 * 179.70531 * 25 12 11 37 37 H 1.08000 * 120.12920 * 180.27762 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4924 2.6222 0.7964 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2119 0.0005 8 1 3.0493 -1.2344 -0.2849 9 6 1.3516 -2.4071 0.3746 10 6 1.8218 -3.6493 -0.0900 11 6 1.1748 -4.8061 0.2800 12 6 0.0634 -4.7508 1.1069 13 6 -0.6369 -6.0246 1.5046 14 8 -0.0504 -6.5370 2.7300 15 6 -0.5662 -7.6798 3.2239 16 8 -1.4814 -8.2325 2.6466 17 6 -0.0203 -8.2592 4.4645 18 6 1.0321 -7.6261 5.1321 19 6 1.5378 -8.1737 6.2929 20 9 2.5554 -7.5621 6.9379 21 6 1.0056 -9.3501 6.8007 22 6 -0.0380 -9.9807 6.1534 23 6 -0.5545 -9.4470 4.9822 24 8 -1.5765 -10.0697 4.3428 25 6 -0.4121 -3.5321 1.5660 26 6 0.2229 -2.3630 1.2138 27 1 -0.4851 0.8400 0.0004 28 1 2.6872 -3.6947 -0.7346 29 1 1.5341 -5.7607 -0.0750 30 1 -0.5250 -6.7637 0.7114 31 1 -1.6957 -5.8219 1.6657 32 1 1.4488 -6.7103 4.7396 33 1 1.4068 -9.7722 7.7103 34 1 -0.4499 -10.8937 6.5573 35 1 -1.2916 -10.7175 3.6838 36 1 -1.2815 -3.5004 2.2059 37 1 -0.1465 -1.4151 1.5762 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785357197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:36 Heat of formation + Delta-G solvation = -146.200790 kcal Electronic energy + Delta-G solvation = -24425.381899 eV Core-core repulsion = 20432.421853 eV Total energy + Delta-G solvation = -3992.960045 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96690 -41.78240 -40.29558 -39.40618 -37.72213 -37.27729 -35.69817 -33.06301 -32.33915 -31.25269 -30.50181 -28.98938 -26.21311 -25.09572 -23.78452 -22.97747 -22.24300 -21.82559 -19.56566 -19.30397 -19.26815 -18.46153 -17.52730 -17.37752 -17.26111 -16.96466 -16.70957 -16.39708 -15.95709 -15.63339 -15.46998 -15.10002 -14.80784 -14.43901 -14.22553 -14.01660 -13.87786 -13.84062 -13.29366 -13.06924 -12.95717 -12.89977 -12.78920 -12.42993 -12.26164 -12.10541 -11.71199 -11.57007 -11.33878 -11.28607 -11.04686 -10.38998 -9.68684 -9.46172 -9.36124 -8.70975 -6.41418 -0.61978 -0.07176 0.69339 1.08980 1.36268 1.37320 1.41278 1.53095 1.82539 2.18404 2.35745 2.68696 3.02578 3.05762 3.49549 3.64743 3.75394 3.96620 4.05264 4.08361 4.09139 4.39435 4.45392 4.52128 4.54380 4.72327 4.82887 4.93882 4.98501 5.07478 5.10148 5.27832 5.36210 5.40121 5.56363 5.62964 5.85790 6.03656 6.11893 6.29730 6.62123 6.65184 6.70269 6.86577 6.94970 8.26107 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.002694 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.774398 B =10392.888152 C =11320.927883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.493 4.493 8 H 0.080 0.920 9 C 0.088 3.912 10 C -0.245 4.245 11 C -0.064 4.064 12 C -0.231 4.231 13 C 0.143 3.857 14 O -0.357 6.357 15 C 0.500 3.500 16 O -0.517 6.517 17 C -0.150 4.150 18 C -0.090 4.090 19 C 0.067 3.933 20 F -0.140 7.140 21 C -0.082 4.082 22 C -0.116 4.116 23 C 0.163 3.837 24 O -0.489 6.489 25 C -0.081 4.081 26 C -0.193 4.193 27 H 0.291 0.709 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.142 0.858 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.415 0.585 36 H 0.104 0.896 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -17.521 12.223 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.521 4.521 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.264 4.264 11 C -0.082 4.082 12 C -0.233 4.233 13 C 0.071 3.929 14 O -0.274 6.274 15 C 0.346 3.654 16 O -0.408 6.408 17 C -0.152 4.152 18 C -0.110 4.110 19 C 0.047 3.953 20 F -0.119 7.119 21 C -0.101 4.101 22 C -0.134 4.134 23 C 0.117 3.883 24 O -0.303 6.303 25 C -0.099 4.099 26 C -0.213 4.213 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.160 0.840 33 H 0.200 0.800 34 H 0.203 0.797 35 H 0.276 0.724 36 H 0.122 0.878 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.411 -17.139 12.349 21.129 hybrid contribution 0.492 1.028 -0.755 1.367 sum 0.904 -16.112 11.594 19.870 Atomic orbital electron populations 1.69867 1.09137 1.30911 1.34439 1.26836 0.95506 1.04751 0.91005 0.85161 0.79209 0.75691 0.79503 1.18543 1.18995 1.18133 1.19931 0.98532 0.92408 1.41254 0.90161 1.18047 0.91502 0.93258 0.88593 1.21167 1.04628 0.92910 1.07702 1.20703 0.93923 0.97306 0.96247 1.18961 1.02857 0.92282 1.09171 1.21571 0.95739 0.92884 0.82682 1.86721 1.60024 1.38387 1.42313 1.21296 0.80350 0.79067 0.84731 1.90815 1.28385 1.61348 1.60203 1.19487 1.00632 0.99616 0.95431 1.21390 0.94871 1.00559 0.94149 1.17670 0.89618 0.94841 0.93126 1.91534 1.57159 1.82682 1.80493 1.21673 0.95183 0.92077 1.01145 1.21580 0.95585 1.02239 0.93983 1.18713 0.86691 0.90056 0.92851 1.84724 1.29448 1.58906 1.57254 1.20776 0.98417 0.92545 0.98190 1.21259 1.00370 0.96929 1.02697 0.89845 0.87816 0.86317 0.90567 0.91528 0.83976 0.79959 0.79682 0.72391 0.87770 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.41 10.97 21.83 0.24 -42.17 16 2 C 0.04 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.98 37.51 29.59 68.60 2.03 39.55 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 7 C -0.49 -26.33 9.05 23.46 0.21 -26.12 16 8 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 9 C 0.09 4.79 5.57 -21.29 -0.12 4.67 16 10 C -0.24 -11.99 9.80 22.73 0.22 -11.76 16 11 C -0.06 -2.80 9.67 22.22 0.21 -2.59 16 12 C -0.23 -10.13 5.54 -19.67 -0.11 -10.24 16 13 C 0.14 5.34 5.59 71.24 0.40 5.74 16 14 O -0.36 -12.90 9.45 -56.71 -0.54 -13.43 16 15 C 0.50 16.18 7.89 70.24 0.55 16.73 16 16 O -0.52 -18.16 14.95 26.83 0.40 -17.76 16 17 C -0.15 -3.81 5.88 -20.02 -0.12 -3.93 16 18 C -0.09 -2.16 9.59 22.58 0.22 -1.95 16 19 C 0.07 1.28 7.28 22.32 0.16 1.44 16 20 F -0.14 -2.98 17.26 44.97 0.78 -2.21 16 21 C -0.08 -0.98 10.01 22.35 0.22 -0.76 16 22 C -0.12 -1.36 9.97 22.33 0.22 -1.14 16 23 C 0.16 3.17 6.72 22.84 0.15 3.32 16 24 O -0.49 -9.62 11.57 -69.11 -0.80 -10.42 16 25 C -0.08 -3.83 9.67 22.22 0.21 -3.62 16 26 C -0.19 -10.26 8.70 22.73 0.20 -10.06 16 27 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 28 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 29 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.08 2.62 8.08 -2.39 -0.02 2.60 16 31 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 32 H 0.14 3.77 7.61 -2.91 -0.02 3.75 16 33 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.41 4.71 9.06 -74.06 -0.67 4.04 16 36 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.10 5.71 6.18 -2.91 -0.02 5.69 16 Total: -1.00 -66.23 336.67 5.66 -60.57 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.46 Total: 23.95 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 3.09 Total: -38.07 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.24 Total: -42.17 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.93 Total: -41.61 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.55 kcal Total: -66.23 5.66 -60.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785357197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.630 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds