Wall clock time and date at job start Tue Mar 31 2020 11:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33391 * 125.20008 * 2 1 4 4 C 1.38424 * 114.91894 * 179.75326 * 3 2 1 5 5 C 1.50701 * 122.54231 * 180.22401 * 4 3 2 6 6 O 1.45204 * 109.46562 * 90.00073 * 5 4 3 7 7 C 1.34229 * 116.99238 * 179.97438 * 6 5 4 8 8 O 1.20825 * 120.00518 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99674 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47126 * 180.02562 * 9 7 6 11 11 C 1.37643 * 120.13173 * 265.00043 * 10 9 7 12 12 C 1.38607 * 120.24778 * 179.97438 * 11 10 9 13 13 C 1.38651 * 120.50741 * 0.02562 * 12 11 10 14 14 C 1.37598 * 120.24427 * 0.02772 * 13 12 11 15 15 C 1.40699 * 120.12622 * 84.72809 * 10 9 7 16 16 C 1.41398 * 120.24531 * 359.97438 * 15 10 9 17 17 H 1.07997 * 119.99707 * 333.90678 * 16 15 10 18 18 C 1.39943 * 119.99933 * 153.89815 * 16 15 10 19 19 N 1.30823 * 120.00296 * 343.70828 * 18 16 15 20 20 Si 1.86804 * 119.99598 * 163.71123 * 18 16 15 21 21 H 1.48497 * 109.47198 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47155 * 120.00358 * 20 18 16 23 23 H 1.48507 * 109.46856 * 239.99726 * 20 18 16 24 24 C 1.33392 * 114.91857 * 0.24949 * 4 3 2 25 25 S 1.75876 * 125.20387 * 180.13740 * 2 1 3 26 26 H 1.09003 * 109.47573 * 89.99653 * 1 2 3 27 27 H 1.09003 * 109.47430 * 210.00300 * 1 2 3 28 28 H 1.08999 * 109.47151 * 330.00084 * 1 2 3 29 29 H 1.08001 * 122.53966 * 0.02894 * 3 2 1 30 30 H 1.08991 * 109.47237 * 210.00388 * 5 4 3 31 31 H 1.09002 * 109.46659 * 330.00887 * 5 4 3 32 32 H 1.08995 * 109.47310 * 300.00483 * 9 7 6 33 33 H 1.09004 * 109.46862 * 60.00520 * 9 7 6 34 34 H 1.08002 * 119.86910 * 0.02562 * 11 10 9 35 35 H 1.08010 * 119.74487 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.88235 * 179.97438 * 13 12 11 37 37 H 1.08007 * 120.12667 * 179.97438 * 14 13 12 38 38 H 0.96999 * 119.99656 * 180.02562 * 19 18 16 39 39 H 1.07998 * 125.20190 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0054 5 6 4.6622 1.9483 0.0112 6 8 4.9854 2.3013 1.3821 7 6 5.8896 3.2767 1.5631 8 8 6.3939 3.8179 0.6078 9 6 6.2757 3.6968 2.9580 10 6 7.2988 4.8008 2.8849 11 6 8.6411 4.5047 2.9571 12 6 9.5843 5.5182 2.8896 13 6 9.1887 6.8396 2.7496 14 6 7.8523 7.1590 2.6765 15 6 6.8859 6.1377 2.7370 16 6 5.5100 6.4533 2.6555 17 1 4.8083 5.7185 2.2892 18 6 5.0576 7.7176 3.0495 19 7 5.8228 8.4881 3.7790 20 14 3.3609 8.3049 2.5338 21 1 2.7002 7.2544 1.7183 22 1 2.5440 8.5808 3.7427 23 1 3.4902 9.5468 1.7298 24 6 3.9750 -0.4477 0.0045 25 16 2.5209 -1.4371 -0.0034 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.8668 2.0895 0.0005 30 1 5.5640 1.6106 -0.4993 31 1 4.2585 2.8204 -0.5030 32 1 5.3926 4.0548 3.4872 33 1 6.6977 2.8444 3.4904 34 1 8.9605 3.4787 3.0658 35 1 10.6355 5.2766 2.9467 36 1 9.9322 7.6213 2.6985 37 1 7.5463 8.1891 2.5678 38 1 5.5090 9.3643 4.0524 39 1 4.9861 -0.8270 0.0086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806025481.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:10 Heat of formation + Delta-G solvation = -44.753820 kcal Electronic energy + Delta-G solvation = -22832.702364 eV Core-core repulsion = 19410.354565 eV Total energy + Delta-G solvation = -3422.347798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.98011 -38.42879 -37.52501 -35.67779 -33.65942 -32.57430 -31.79985 -29.50520 -28.15713 -26.92728 -26.49683 -25.02734 -21.96736 -21.07695 -20.91502 -19.36143 -19.11724 -17.39605 -17.19460 -17.02562 -16.11194 -15.70445 -15.33584 -14.73111 -14.50529 -14.13715 -13.85633 -13.63539 -13.51455 -13.00830 -12.96786 -12.64231 -12.56532 -12.20153 -12.09764 -11.82752 -11.60062 -11.53218 -11.21155 -11.10235 -11.01656 -10.90929 -10.72534 -10.41021 -10.25867 -9.76376 -9.52445 -9.41084 -9.19488 -8.76463 -8.58110 -7.37026 -7.34404 -6.77152 -4.38947 0.78514 1.43152 1.76671 2.30724 2.75029 2.91862 2.97151 3.06560 3.11864 3.24211 3.63284 3.92088 4.55671 4.63461 4.84723 5.03023 5.13460 5.23218 5.26756 5.36542 5.51432 5.61238 5.67951 5.77623 5.95833 5.97833 6.09308 6.21792 6.25793 6.33498 6.40949 6.48084 6.73637 6.97880 7.05453 7.25784 7.37890 7.60649 7.87596 8.02118 8.09262 8.27032 8.48106 8.61569 8.87248 8.96654 10.16870 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.003460 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.075024 B = 8090.971070 C = 9747.148394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.182 4.182 3 C -0.123 4.123 4 C -0.099 4.099 5 C 0.125 3.875 6 O -0.362 6.362 7 C 0.459 3.541 8 O -0.493 6.493 9 C -0.041 4.041 10 C -0.194 4.194 11 C -0.077 4.077 12 C -0.240 4.240 13 C -0.104 4.104 14 C -0.158 4.158 15 C 0.130 3.870 16 C -0.458 4.458 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.903 3.097 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.191 4.191 25 S 0.096 5.904 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.280 0.720 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 -14.537 -5.152 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.299 4.299 3 C -0.152 4.152 4 C -0.111 4.111 5 C 0.048 3.952 6 O -0.281 6.281 7 C 0.301 3.699 8 O -0.378 6.378 9 C -0.078 4.078 10 C -0.196 4.196 11 C -0.095 4.095 12 C -0.259 4.259 13 C -0.123 4.123 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.487 4.487 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.417 5.417 20 Si 0.728 3.272 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.327 4.327 25 S 0.360 5.640 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.161 0.839 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.821 -15.730 -5.361 18.814 hybrid contribution -0.295 1.902 -0.348 1.956 sum -9.116 -13.828 -5.709 17.519 Atomic orbital electron populations 1.20334 0.87670 1.03291 1.02718 1.24423 1.00019 0.95451 1.09963 1.20016 0.92141 0.99757 1.03335 1.18613 0.94198 0.93650 1.04658 1.21340 0.96208 0.95356 0.82272 1.86610 1.57916 1.53314 1.30211 1.24519 0.75495 0.75844 0.94036 1.90641 1.51641 1.52213 1.43292 1.19988 1.00841 0.97910 0.89094 1.19058 0.91809 0.93276 1.15420 1.20327 0.92820 0.96619 0.99769 1.20317 0.96752 0.93344 1.15499 1.20702 0.95838 0.95009 1.00734 1.21311 0.91297 0.99784 1.05363 1.17357 0.93309 0.89878 0.86691 1.19526 0.93215 0.98007 1.37965 0.90749 1.25881 0.99404 0.96194 0.92521 1.69822 1.37393 1.09504 1.25020 0.86334 0.81973 0.79541 0.79372 1.18460 1.19886 1.19654 1.25523 1.02164 0.96050 1.08941 1.84139 0.96723 1.09667 1.73483 0.90761 0.91321 0.90330 0.83945 0.90681 0.90364 0.87449 0.89387 0.89545 0.89508 0.89445 0.86406 0.90900 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.38 36.00 0.37 -0.24 16 2 C -0.18 -1.89 6.51 -36.00 -0.23 -2.13 16 3 C -0.12 -1.48 9.85 -41.21 -0.41 -1.89 16 4 C -0.10 -1.28 5.44 -106.25 -0.58 -1.86 16 5 C 0.12 1.86 5.71 36.01 0.21 2.07 16 6 O -0.36 -6.39 10.20 -39.25 -0.40 -6.79 16 7 C 0.46 9.36 7.57 36.01 0.27 9.63 16 8 O -0.49 -11.58 15.78 -18.75 -0.30 -11.88 16 9 C -0.04 -0.83 5.29 -29.03 -0.15 -0.98 16 10 C -0.19 -4.65 4.43 -103.91 -0.46 -5.11 16 11 C -0.08 -1.76 9.66 -39.66 -0.38 -2.14 16 12 C -0.24 -5.51 10.05 -39.29 -0.39 -5.91 16 13 C -0.10 -2.51 10.02 -39.66 -0.40 -2.91 16 14 C -0.16 -4.19 8.69 -38.87 -0.34 -4.52 16 15 C 0.13 3.45 5.56 -106.82 -0.59 2.86 16 16 C -0.46 -11.98 8.14 -37.74 -0.31 -12.29 16 17 H 0.07 1.91 6.67 -52.49 -0.35 1.56 16 18 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 19 N -0.79 -20.25 10.96 55.55 0.61 -19.64 16 20 Si 0.90 18.73 29.59 -169.99 -5.03 13.70 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.19 -2.16 10.98 29.04 0.32 -1.84 16 25 S 0.10 0.94 23.33 -107.50 -2.51 -1.56 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 31 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 32 H 0.11 2.15 7.08 -51.93 -0.37 1.78 16 33 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 34 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.12 3.20 6.21 -52.48 -0.33 2.87 16 38 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 39 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -29.74 351.87 -10.31 -40.05 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.82 Total: 6.25 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -3.17 Total: -25.43 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.61 Total: -19.64 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.70 Total: -18.67 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.74 -10.31 -40.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806025481.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.703 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds