Wall clock time and date at job start Tue Mar 31 2020 11:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33391 * 125.20008 * 2 1 4 4 C 1.38424 * 114.91894 * 179.75326 * 3 2 1 5 5 C 1.50701 * 122.54231 * 180.22401 * 4 3 2 6 6 O 1.45204 * 109.46562 * 90.00073 * 5 4 3 7 7 C 1.34229 * 116.99238 * 179.97438 * 6 5 4 8 8 O 1.20825 * 120.00518 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99674 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47126 * 180.02562 * 9 7 6 11 11 C 1.37643 * 120.13173 * 265.00043 * 10 9 7 12 12 C 1.38607 * 120.24778 * 179.97438 * 11 10 9 13 13 C 1.38651 * 120.50741 * 0.02562 * 12 11 10 14 14 C 1.37598 * 120.24427 * 0.02772 * 13 12 11 15 15 C 1.40699 * 120.12622 * 84.72809 * 10 9 7 16 16 C 1.41398 * 120.24531 * 359.97438 * 15 10 9 17 17 H 1.07997 * 119.99707 * 333.90678 * 16 15 10 18 18 C 1.39943 * 119.99933 * 153.89815 * 16 15 10 19 19 N 1.30823 * 120.00296 * 343.70828 * 18 16 15 20 20 Si 1.86804 * 119.99598 * 163.71123 * 18 16 15 21 21 H 1.48497 * 109.47198 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47155 * 120.00358 * 20 18 16 23 23 H 1.48507 * 109.46856 * 239.99726 * 20 18 16 24 24 C 1.33392 * 114.91857 * 0.24949 * 4 3 2 25 25 S 1.75876 * 125.20387 * 180.13740 * 2 1 3 26 26 H 1.09003 * 109.47573 * 89.99653 * 1 2 3 27 27 H 1.09003 * 109.47430 * 210.00300 * 1 2 3 28 28 H 1.08999 * 109.47151 * 330.00084 * 1 2 3 29 29 H 1.08001 * 122.53966 * 0.02894 * 3 2 1 30 30 H 1.08991 * 109.47237 * 210.00388 * 5 4 3 31 31 H 1.09002 * 109.46659 * 330.00887 * 5 4 3 32 32 H 1.08995 * 109.47310 * 300.00483 * 9 7 6 33 33 H 1.09004 * 109.46862 * 60.00520 * 9 7 6 34 34 H 1.08002 * 119.86910 * 0.02562 * 11 10 9 35 35 H 1.08010 * 119.74487 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.88235 * 179.97438 * 13 12 11 37 37 H 1.08007 * 120.12667 * 179.97438 * 14 13 12 38 38 H 0.96999 * 119.99656 * 180.02562 * 19 18 16 39 39 H 1.07998 * 125.20190 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0054 5 6 4.6622 1.9483 0.0112 6 8 4.9854 2.3013 1.3821 7 6 5.8896 3.2767 1.5631 8 8 6.3939 3.8179 0.6078 9 6 6.2757 3.6968 2.9580 10 6 7.2988 4.8008 2.8849 11 6 8.6411 4.5047 2.9571 12 6 9.5843 5.5182 2.8896 13 6 9.1887 6.8396 2.7496 14 6 7.8523 7.1590 2.6765 15 6 6.8859 6.1377 2.7370 16 6 5.5100 6.4533 2.6555 17 1 4.8083 5.7185 2.2892 18 6 5.0576 7.7176 3.0495 19 7 5.8228 8.4881 3.7790 20 14 3.3609 8.3049 2.5338 21 1 2.7002 7.2544 1.7183 22 1 2.5440 8.5808 3.7427 23 1 3.4902 9.5468 1.7298 24 6 3.9750 -0.4477 0.0045 25 16 2.5209 -1.4371 -0.0034 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.8668 2.0895 0.0005 30 1 5.5640 1.6106 -0.4993 31 1 4.2585 2.8204 -0.5030 32 1 5.3926 4.0548 3.4872 33 1 6.6977 2.8444 3.4904 34 1 8.9605 3.4787 3.0658 35 1 10.6355 5.2766 2.9467 36 1 9.9322 7.6213 2.6985 37 1 7.5463 8.1891 2.5678 38 1 5.5090 9.3643 4.0524 39 1 4.9861 -0.8270 0.0086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806025481.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:09 Heat of formation + Delta-G solvation = -57.555558 kcal Electronic energy + Delta-G solvation = -22833.257489 eV Core-core repulsion = 19410.354565 eV Total energy + Delta-G solvation = -3422.902923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50725 -39.64610 -39.09595 -37.18826 -35.53287 -33.68506 -33.26129 -31.38700 -29.51492 -28.16270 -27.57966 -26.87107 -23.15781 -22.83732 -22.37456 -21.07548 -20.03916 -19.10164 -18.59447 -18.31264 -17.59065 -17.07750 -17.04105 -16.25198 -15.82267 -15.51626 -15.45344 -14.86823 -14.48860 -14.38502 -14.23587 -14.02675 -13.72619 -13.49624 -13.38158 -13.23771 -12.96537 -12.93795 -12.78098 -12.74273 -12.53310 -12.44339 -12.12796 -11.82447 -11.61549 -11.40407 -11.35607 -11.24619 -11.05208 -9.59607 -9.43111 -9.25679 -9.22067 -8.62719 -6.33872 -0.08447 0.61639 0.87313 0.93856 1.07537 1.35452 1.35850 1.38091 1.48476 1.51328 2.18761 2.26431 2.76154 3.64977 3.76187 3.89754 4.03846 4.10448 4.25284 4.31301 4.35167 4.49449 4.53527 4.56440 4.61238 4.69532 4.73796 4.77075 4.99889 5.07791 5.12648 5.16850 5.34085 5.34444 5.42413 5.47039 5.51280 5.74281 6.00626 6.12760 6.19377 6.38281 6.69755 6.91956 6.95493 7.06735 8.33834 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.003460 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.075024 B = 8090.971070 C = 9747.148394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.181 4.181 3 C -0.149 4.149 4 C -0.119 4.119 5 C 0.123 3.877 6 O -0.357 6.357 7 C 0.467 3.533 8 O -0.531 6.531 9 C -0.041 4.041 10 C -0.201 4.201 11 C -0.085 4.085 12 C -0.241 4.241 13 C -0.113 4.113 14 C -0.192 4.192 15 C 0.098 3.902 16 C -0.486 4.486 17 H 0.069 0.931 18 C 0.039 3.961 19 N -0.822 5.822 20 Si 0.970 3.030 21 H -0.263 1.263 22 H -0.260 1.260 23 H -0.267 1.267 24 C -0.197 4.197 25 S 0.139 5.861 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.287 0.713 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 -16.722 -5.150 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.299 4.299 3 C -0.178 4.178 4 C -0.131 4.131 5 C 0.047 3.953 6 O -0.275 6.275 7 C 0.311 3.689 8 O -0.419 6.419 9 C -0.078 4.078 10 C -0.202 4.202 11 C -0.103 4.103 12 C -0.260 4.260 13 C -0.131 4.131 14 C -0.211 4.211 15 C 0.096 3.904 16 C -0.515 4.515 17 H 0.087 0.913 18 C -0.176 4.176 19 N -0.448 5.448 20 Si 0.792 3.208 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.192 1.192 24 C -0.333 4.333 25 S 0.403 5.597 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.158 0.842 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.728 -17.938 -5.345 21.094 hybrid contribution 0.028 2.423 -0.364 2.451 sum -9.700 -15.514 -5.709 19.167 Atomic orbital electron populations 1.20464 0.85674 1.04183 1.03881 1.24838 1.01523 0.95338 1.08159 1.20079 0.92131 1.00395 1.05216 1.18524 0.94070 0.93576 1.06968 1.21500 0.97181 0.95937 0.80640 1.86584 1.56729 1.52066 1.32137 1.24401 0.75254 0.75687 0.93544 1.90625 1.53247 1.53640 1.44389 1.20005 1.00170 0.98167 0.89496 1.19459 0.93413 0.93385 1.13965 1.20772 0.92374 0.98420 0.98765 1.20742 0.98555 0.92776 1.13966 1.20991 0.95391 0.96527 1.00188 1.21318 0.92684 0.99177 1.07946 1.17735 0.93728 0.91289 0.87660 1.19661 0.93356 0.99049 1.39478 0.91303 1.26641 1.03089 0.95869 0.92031 1.69872 1.39203 1.10050 1.25710 0.85335 0.77442 0.78786 0.79282 1.18726 1.18414 1.19152 1.25799 1.03823 0.95929 1.07766 1.84004 0.95141 1.08363 1.72162 0.89374 0.89926 0.89953 0.84238 0.90078 0.91290 0.87666 0.85749 0.86155 0.86372 0.87416 0.88328 0.90198 0.80173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.38 71.24 0.74 -0.32 16 2 C -0.18 -3.45 6.51 24.59 0.16 -3.29 16 3 C -0.15 -3.50 9.85 21.22 0.21 -3.29 16 4 C -0.12 -3.00 5.44 -20.92 -0.11 -3.11 16 5 C 0.12 3.69 5.71 71.24 0.41 4.10 16 6 O -0.36 -12.51 10.20 -51.40 -0.52 -13.03 16 7 C 0.47 19.02 7.57 71.24 0.54 19.56 16 8 O -0.53 -25.32 15.78 21.97 0.35 -24.97 16 9 C -0.04 -1.64 5.29 29.10 0.15 -1.49 16 10 C -0.20 -9.61 4.43 -19.41 -0.09 -9.69 16 11 C -0.09 -3.76 9.66 22.22 0.21 -3.55 16 12 C -0.24 -10.73 10.05 22.46 0.23 -10.50 16 13 C -0.11 -5.44 10.02 22.22 0.22 -5.22 16 14 C -0.19 -10.48 8.69 22.73 0.20 -10.28 16 15 C 0.10 5.35 5.56 -21.29 -0.12 5.23 16 16 C -0.49 -26.29 8.14 23.46 0.19 -26.10 16 17 H 0.07 3.66 6.67 -2.91 -0.02 3.64 16 18 C 0.04 1.98 5.16 85.26 0.44 2.42 16 19 N -0.82 -43.29 10.96 21.83 0.24 -43.06 16 20 Si 0.97 39.07 29.59 68.60 2.03 41.10 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 23 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 24 C -0.20 -4.14 10.98 66.72 0.73 -3.40 16 25 S 0.14 2.39 23.33 -56.49 -1.32 1.08 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.08 2.29 8.11 -2.39 -0.02 2.27 16 31 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 32 H 0.11 4.24 7.08 -2.39 -0.02 4.22 16 33 H 0.12 3.96 8.05 -2.38 -0.02 3.94 16 34 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 37 H 0.10 5.63 6.21 -2.91 -0.02 5.61 16 38 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 39 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -65.42 351.87 5.95 -59.47 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 1.06 Total: 28.36 kcal Atomic # 6 Polarization: -53.05 SS G_CDS: 4.11 Total: -48.94 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.24 Total: -43.06 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.18 Total: -38.00 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.32 Total: 1.08 kcal Total: -65.42 5.95 -59.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806025481.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.910 kcal (2) G-P(sol) polarization free energy of solvation -65.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds