Wall clock time and date at job start Tue Mar 31 2020 11:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38753 * 119.89463 * 2 1 4 4 C 1.37294 * 120.33342 * 179.97438 * 3 2 1 5 5 C 1.40677 * 120.27922 * 359.78978 * 4 3 2 6 6 C 1.46410 * 129.77506 * 179.65502 * 5 4 3 7 7 C 1.46641 * 123.04584 * 0.60495 * 6 5 4 8 8 O 1.21613 * 120.00120 * 359.73863 * 7 6 5 9 9 O 1.34860 * 119.99976 * 179.73013 * 7 6 5 10 10 C 1.45196 * 116.99961 * 185.36133 * 9 7 6 11 11 C 1.50701 * 112.85238 * 54.39718 * 10 9 7 12 12 H 1.08003 * 119.99723 * 243.84144 * 11 10 9 13 13 C 1.37874 * 119.99912 * 63.83586 * 11 10 9 14 14 N 1.31516 * 120.00148 * 353.86406 * 13 11 10 15 15 Si 1.86801 * 119.99823 * 173.85658 * 13 11 10 16 16 H 1.48497 * 109.46945 * 60.00606 * 15 13 11 17 17 H 1.48502 * 109.46972 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47293 * 299.99880 * 15 13 11 19 19 C 1.53785 * 113.61252 * 283.08851 * 10 9 7 20 20 C 1.53789 * 87.08232 * 220.01993 * 19 10 9 21 21 C 1.53785 * 113.61290 * 185.59473 * 10 9 7 22 22 C 1.34026 * 113.90626 * 180.34507 * 6 5 4 23 23 S 1.70021 * 112.22760 * 0.22307 * 22 6 5 24 24 C 1.39428 * 119.17044 * 0.45952 * 5 4 3 25 25 C 1.37498 * 119.89705 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47174 * 269.97855 * 1 2 3 27 27 H 1.09001 * 109.47211 * 29.97711 * 1 2 3 28 28 H 1.09002 * 109.46953 * 149.98098 * 1 2 3 29 29 H 1.07999 * 119.83481 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.86290 * 180.02562 * 4 3 2 31 31 H 0.97000 * 120.00530 * 185.01394 * 14 13 11 32 32 H 1.08994 * 113.61915 * 334.57010 * 19 10 9 33 33 H 1.09004 * 113.61026 * 105.47280 * 19 10 9 34 34 H 1.08999 * 113.61145 * 270.88915 * 20 19 10 35 35 H 1.08988 * 113.68950 * 139.99094 * 20 19 10 36 36 H 1.08997 * 113.61165 * 254.52939 * 21 10 9 37 37 H 1.08996 * 113.61323 * 25.34708 * 21 10 9 38 38 H 1.07996 * 123.88510 * 180.27309 * 22 6 5 39 39 H 1.08007 * 119.84443 * 359.96017 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.2029 0.0000 4 6 3.5715 1.2134 0.0005 5 6 4.2900 0.0040 0.0055 6 6 5.7359 -0.2265 0.0003 7 6 6.7191 0.8615 0.0010 8 8 6.3454 2.0188 0.0013 9 8 8.0377 0.5787 0.0014 10 6 8.9523 1.6998 0.1230 11 6 8.6706 2.5566 1.3303 12 1 8.3638 3.5843 1.2035 13 6 8.8045 2.0284 2.5968 14 7 9.0597 0.7475 2.7516 15 14 8.6237 3.1321 4.0930 16 1 7.2687 3.7395 4.0991 17 1 8.8117 2.3278 5.3271 18 1 9.6476 4.2064 4.0423 19 6 9.1200 2.5019 -1.1784 20 6 10.6153 2.5997 -0.8329 21 6 10.4319 1.3063 -0.0215 22 6 6.0793 -1.5220 0.0003 23 16 4.7228 -2.5470 0.0004 24 6 3.5906 -1.2021 0.0002 25 6 2.1924 -1.1920 -0.0005 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6542 2.1356 0.0004 30 1 4.1020 2.1541 0.0009 31 1 9.0819 0.3614 3.6411 32 1 8.9168 1.9215 -2.0783 33 1 8.6057 3.4630 -1.1682 34 1 10.8664 3.4666 -0.2217 35 1 11.2723 2.4849 -1.6949 36 1 10.9767 1.3021 0.9225 37 1 10.5872 0.3982 -0.6040 38 1 7.1002 -1.8742 0.0010 39 1 1.6481 -2.1249 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856689.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:00 Heat of formation + Delta-G solvation = -24.424534 kcal Electronic energy + Delta-G solvation = -23923.498415 eV Core-core repulsion = 20502.032161 eV Total energy + Delta-G solvation = -3421.466254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.78683 -38.89896 -37.09446 -35.19117 -34.11806 -32.29631 -31.36637 -30.64459 -26.54814 -26.22043 -24.73865 -24.54144 -22.90830 -22.27573 -21.34095 -19.19929 -18.57527 -17.51412 -16.89924 -16.05227 -15.47481 -15.08593 -14.85486 -14.73687 -14.38722 -14.32232 -13.93911 -13.78049 -13.45563 -13.08180 -12.83471 -12.44410 -12.23683 -12.19011 -11.69940 -11.57145 -11.38755 -11.18842 -11.01584 -10.92894 -10.80163 -10.50685 -10.39521 -10.29763 -9.94093 -9.80978 -9.39121 -9.29181 -8.80182 -8.54036 -8.52549 -8.31387 -7.51729 -6.12562 -4.23039 0.81976 1.33862 1.61232 2.01099 2.09715 3.27714 3.31883 3.36246 3.65607 3.95081 4.27871 4.36265 4.73362 4.92837 4.97867 5.16782 5.21579 5.36088 5.49984 5.57635 5.67206 5.73647 5.77192 5.81665 5.86231 5.94700 6.09386 6.22747 6.23159 6.39047 6.43833 6.50586 6.61662 6.64064 6.72563 6.90223 7.02934 7.09995 7.29365 7.55364 7.76829 7.89637 8.35551 8.80487 9.22178 9.46299 10.91868 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.004480 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.844843 B = 6248.508142 C = 6698.085087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.122 4.122 4 C -0.060 4.060 5 C -0.042 4.042 6 C -0.111 4.111 7 C 0.527 3.473 8 O -0.500 6.500 9 O -0.344 6.344 10 C 0.241 3.759 11 C -0.511 4.511 12 H 0.068 0.932 13 C 0.076 3.924 14 N -0.863 5.863 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.159 4.159 20 C -0.131 4.131 21 C -0.107 4.107 22 C -0.163 4.163 23 S 0.145 5.855 24 C -0.155 4.155 25 C -0.088 4.088 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.146 0.854 31 H 0.263 0.737 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.182 0.818 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 -5.756 -6.000 13.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.080 4.080 5 C -0.049 4.049 6 C -0.126 4.126 7 C 0.368 3.632 8 O -0.390 6.390 9 O -0.261 6.261 10 C 0.208 3.792 11 C -0.548 4.548 12 H 0.086 0.914 13 C -0.130 4.130 14 N -0.500 5.500 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.197 4.197 20 C -0.168 4.168 21 C -0.145 4.145 22 C -0.299 4.299 23 S 0.412 5.588 24 C -0.270 4.270 25 C -0.111 4.111 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.164 0.836 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.199 0.801 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.155 -7.135 -5.882 14.490 hybrid contribution 0.247 2.057 1.031 2.314 sum -10.908 -5.078 -4.851 12.973 Atomic orbital electron populations 1.20762 0.90870 1.02712 1.02331 1.19736 0.95902 0.92691 0.99751 1.20906 0.93776 0.97565 1.02003 1.21326 0.93470 0.97835 0.95370 1.18787 0.90538 0.93406 1.02203 1.19335 0.91689 0.93086 1.08443 1.19714 0.82898 0.86755 0.73857 1.90692 1.81320 1.21602 1.45390 1.86520 1.14650 1.43727 1.81160 1.21201 0.84273 0.81847 0.91919 1.20902 1.47127 0.97828 0.88926 0.91381 1.25050 0.93725 0.95126 0.99119 1.70008 1.46035 1.10830 1.23092 0.86643 0.79033 0.80744 0.81684 1.19998 1.21137 1.19808 1.23538 0.96395 1.01041 0.98753 1.22519 0.95911 0.99375 0.99034 1.22898 0.96885 0.95185 0.99508 1.25172 1.05127 0.96951 1.02613 1.82704 0.93112 1.06972 1.76028 1.22674 0.97927 0.96796 1.09569 1.20173 0.90228 0.97963 1.02688 0.91137 0.91401 0.91621 0.85508 0.83589 0.92672 0.92135 0.91924 0.90228 0.92989 0.90678 0.92316 0.80055 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.08 -0.97 5.87 -104.70 -0.61 -1.58 16 3 C -0.12 -1.71 9.66 -39.73 -0.38 -2.10 16 4 C -0.06 -1.06 9.59 -39.00 -0.37 -1.44 16 5 C -0.04 -0.79 6.03 -105.25 -0.63 -1.43 16 6 C -0.11 -2.30 5.94 -104.70 -0.62 -2.92 16 7 C 0.53 12.88 7.47 34.12 0.25 13.13 16 8 O -0.50 -13.04 13.38 -19.35 -0.26 -13.30 16 9 O -0.34 -8.75 9.40 -40.93 -0.38 -9.13 16 10 C 0.24 6.08 0.48 -90.95 -0.04 6.04 16 11 C -0.51 -14.08 6.54 -34.44 -0.23 -14.30 16 12 H 0.07 1.93 7.82 -52.48 -0.41 1.52 16 13 C 0.08 2.08 5.25 -17.82 -0.09 1.99 16 14 N -0.86 -24.23 12.65 55.43 0.70 -23.53 16 15 Si 0.89 21.52 29.55 -169.99 -5.02 16.50 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.16 -3.53 7.10 -25.91 -0.18 -3.71 16 20 C -0.13 -2.62 7.81 -25.91 -0.20 -2.83 16 21 C -0.11 -2.44 7.23 -25.91 -0.19 -2.62 16 22 C -0.16 -2.88 10.33 29.25 0.30 -2.58 16 23 S 0.15 2.05 22.98 -107.50 -2.47 -0.42 16 24 C -0.15 -2.45 6.46 -38.54 -0.25 -2.70 16 25 C -0.09 -1.16 9.71 -39.26 -0.38 -1.54 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.15 2.78 6.45 -52.49 -0.34 2.45 16 31 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.42 8.09 -51.93 -0.42 1.00 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.05 0.89 8.14 -51.94 -0.42 0.46 16 36 H 0.07 1.83 7.80 -51.93 -0.40 1.43 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.18 3.10 7.92 -52.49 -0.42 2.68 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -30.85 344.14 -10.45 -41.30 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.92 Total: 2.58 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -3.28 Total: -19.18 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.70 Total: -23.53 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.64 Total: -22.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.47 Total: -0.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.85 -10.45 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856689.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.875 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds