Wall clock time and date at job start Tue Mar 31 2020 11:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38753 * 119.89463 * 2 1 4 4 C 1.37294 * 120.33342 * 179.97438 * 3 2 1 5 5 C 1.40677 * 120.27922 * 359.78978 * 4 3 2 6 6 C 1.46410 * 129.77506 * 179.65502 * 5 4 3 7 7 C 1.46641 * 123.04584 * 0.60495 * 6 5 4 8 8 O 1.21613 * 120.00120 * 359.73863 * 7 6 5 9 9 O 1.34860 * 119.99976 * 179.73013 * 7 6 5 10 10 C 1.45196 * 116.99961 * 185.36133 * 9 7 6 11 11 C 1.50701 * 112.85238 * 54.39718 * 10 9 7 12 12 H 1.08003 * 119.99723 * 243.84144 * 11 10 9 13 13 C 1.37874 * 119.99912 * 63.83586 * 11 10 9 14 14 N 1.31516 * 120.00148 * 353.86406 * 13 11 10 15 15 Si 1.86801 * 119.99823 * 173.85658 * 13 11 10 16 16 H 1.48497 * 109.46945 * 60.00606 * 15 13 11 17 17 H 1.48502 * 109.46972 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47293 * 299.99880 * 15 13 11 19 19 C 1.53785 * 113.61252 * 283.08851 * 10 9 7 20 20 C 1.53789 * 87.08232 * 220.01993 * 19 10 9 21 21 C 1.53785 * 113.61290 * 185.59473 * 10 9 7 22 22 C 1.34026 * 113.90626 * 180.34507 * 6 5 4 23 23 S 1.70021 * 112.22760 * 0.22307 * 22 6 5 24 24 C 1.39428 * 119.17044 * 0.45952 * 5 4 3 25 25 C 1.37498 * 119.89705 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47174 * 269.97855 * 1 2 3 27 27 H 1.09001 * 109.47211 * 29.97711 * 1 2 3 28 28 H 1.09002 * 109.46953 * 149.98098 * 1 2 3 29 29 H 1.07999 * 119.83481 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.86290 * 180.02562 * 4 3 2 31 31 H 0.97000 * 120.00530 * 185.01394 * 14 13 11 32 32 H 1.08994 * 113.61915 * 334.57010 * 19 10 9 33 33 H 1.09004 * 113.61026 * 105.47280 * 19 10 9 34 34 H 1.08999 * 113.61145 * 270.88915 * 20 19 10 35 35 H 1.08988 * 113.68950 * 139.99094 * 20 19 10 36 36 H 1.08997 * 113.61165 * 254.52939 * 21 10 9 37 37 H 1.08996 * 113.61323 * 25.34708 * 21 10 9 38 38 H 1.07996 * 123.88510 * 180.27309 * 22 6 5 39 39 H 1.08007 * 119.84443 * 359.96017 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.2029 0.0000 4 6 3.5715 1.2134 0.0005 5 6 4.2900 0.0040 0.0055 6 6 5.7359 -0.2265 0.0003 7 6 6.7191 0.8615 0.0010 8 8 6.3454 2.0188 0.0013 9 8 8.0377 0.5787 0.0014 10 6 8.9523 1.6998 0.1230 11 6 8.6706 2.5566 1.3303 12 1 8.3638 3.5843 1.2035 13 6 8.8045 2.0284 2.5968 14 7 9.0597 0.7475 2.7516 15 14 8.6237 3.1321 4.0930 16 1 7.2687 3.7395 4.0991 17 1 8.8117 2.3278 5.3271 18 1 9.6476 4.2064 4.0423 19 6 9.1200 2.5019 -1.1784 20 6 10.6153 2.5997 -0.8329 21 6 10.4319 1.3063 -0.0215 22 6 6.0793 -1.5220 0.0003 23 16 4.7228 -2.5470 0.0004 24 6 3.5906 -1.2021 0.0002 25 6 2.1924 -1.1920 -0.0005 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6542 2.1356 0.0004 30 1 4.1020 2.1541 0.0009 31 1 9.0819 0.3614 3.6411 32 1 8.9168 1.9215 -2.0783 33 1 8.6057 3.4630 -1.1682 34 1 10.8664 3.4666 -0.2217 35 1 11.2723 2.4849 -1.6949 36 1 10.9767 1.3021 0.9225 37 1 10.5872 0.3982 -0.6040 38 1 7.1002 -1.8742 0.0010 39 1 1.6481 -2.1249 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856689.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:59 Heat of formation + Delta-G solvation = -39.470945 kcal Electronic energy + Delta-G solvation = -23924.150877 eV Core-core repulsion = 20502.032161 eV Total energy + Delta-G solvation = -3422.118716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30912 -40.43365 -38.82431 -36.52929 -36.01181 -34.39608 -32.45727 -31.80216 -28.29568 -27.47377 -26.43826 -26.31592 -24.53474 -23.54156 -22.63026 -20.76086 -20.50057 -18.86395 -18.63909 -17.60482 -17.13133 -16.87983 -16.50310 -16.21341 -16.06554 -15.67178 -15.45699 -14.99480 -14.75087 -14.61254 -14.20951 -13.84050 -13.62217 -13.51377 -13.11091 -13.04508 -12.98096 -12.81802 -12.72431 -12.49839 -12.23316 -12.16570 -11.99139 -11.85303 -11.69258 -11.64807 -11.14145 -10.82472 -10.63262 -10.53010 -10.43779 -9.47031 -8.70357 -8.22796 -6.38537 -0.49885 0.15884 0.41092 0.64989 0.79114 1.31694 1.32965 1.40643 2.10428 2.31550 2.42300 2.74135 3.09295 3.53655 3.84244 3.93329 3.97387 4.00882 4.16648 4.22226 4.30626 4.34596 4.47080 4.56562 4.63355 4.74817 4.83415 4.88301 4.91640 4.93823 5.00268 5.12820 5.17728 5.27186 5.34310 5.40955 5.46569 5.57199 5.61195 5.75184 5.90034 5.96846 6.40544 6.64378 7.26683 7.39562 8.80791 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.004480 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.844843 B = 6248.508142 C = 6698.085087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.071 4.071 3 C -0.114 4.114 4 C -0.097 4.097 5 C -0.073 4.073 6 C -0.156 4.156 7 C 0.517 3.483 8 O -0.534 6.534 9 O -0.355 6.355 10 C 0.214 3.786 11 C -0.524 4.524 12 H 0.047 0.953 13 C 0.035 3.965 14 N -0.885 5.885 15 Si 0.943 3.057 16 H -0.286 1.286 17 H -0.275 1.275 18 H -0.260 1.260 19 C -0.155 4.155 20 C -0.109 4.109 21 C -0.104 4.104 22 C -0.167 4.167 23 S 0.242 5.758 24 C -0.174 4.174 25 C -0.083 4.083 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.113 0.887 31 H 0.264 0.736 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.181 0.819 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 -7.616 -6.337 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.080 4.080 6 C -0.172 4.172 7 C 0.361 3.639 8 O -0.426 6.426 9 O -0.271 6.271 10 C 0.180 3.820 11 C -0.561 4.561 12 H 0.065 0.935 13 C -0.168 4.168 14 N -0.522 5.522 15 Si 0.769 3.231 16 H -0.212 1.212 17 H -0.200 1.200 18 H -0.185 1.185 19 C -0.193 4.193 20 C -0.146 4.146 21 C -0.142 4.142 22 C -0.303 4.303 23 S 0.510 5.490 24 C -0.289 4.289 25 C -0.105 4.105 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.168 0.832 30 H 0.131 0.869 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.198 0.802 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.275 -9.009 -6.225 17.209 hybrid contribution 0.760 2.558 1.091 2.883 sum -12.515 -6.451 -5.134 14.986 Atomic orbital electron populations 1.20859 0.87423 1.04446 1.03647 1.20232 0.98175 0.91593 0.97405 1.21222 0.92304 0.99709 1.00082 1.21235 0.95153 0.96572 0.98747 1.18861 0.89808 0.95065 1.04241 1.19296 0.92119 0.92976 1.12825 1.20442 0.83013 0.87681 0.72799 1.90651 1.81593 1.23179 1.47148 1.86487 1.15498 1.43723 1.81441 1.21483 0.85445 0.82488 0.92572 1.20984 1.47298 0.97325 0.90529 0.93526 1.25660 0.93597 0.96296 1.01294 1.70088 1.46881 1.11784 1.23451 0.85845 0.78514 0.79623 0.79162 1.21163 1.20025 1.18451 1.23482 0.97964 0.99917 0.97912 1.22436 0.94918 0.97602 0.99691 1.22865 0.94893 0.97216 0.99191 1.25412 1.07170 0.97168 1.00577 1.82240 0.89494 1.03782 1.73468 1.23045 0.99435 0.96519 1.09909 1.20685 0.89098 0.99887 1.00825 0.89799 0.90193 0.89505 0.83206 0.86866 0.92685 0.90903 0.93421 0.90579 0.88925 0.92869 0.90946 0.80173 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.07 -1.55 5.87 -19.92 -0.12 -1.66 16 3 C -0.11 -3.09 9.66 22.17 0.21 -2.88 16 4 C -0.10 -3.60 9.59 22.64 0.22 -3.38 16 5 C -0.07 -2.84 6.03 -20.27 -0.12 -2.96 16 6 C -0.16 -6.81 5.94 -19.92 -0.12 -6.93 16 7 C 0.52 27.00 7.47 70.02 0.52 27.52 16 8 O -0.53 -30.15 13.38 19.47 0.26 -29.89 16 9 O -0.35 -18.96 9.40 -57.74 -0.54 -19.50 16 10 C 0.21 11.21 0.48 -11.01 -0.01 11.21 16 11 C -0.52 -30.28 6.54 25.60 0.17 -30.11 16 12 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 13 C 0.03 1.98 5.25 84.65 0.44 2.43 16 14 N -0.89 -51.22 12.65 21.45 0.27 -50.95 16 15 Si 0.94 45.42 29.55 68.60 2.03 47.45 16 16 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 19 C -0.15 -7.02 7.10 31.12 0.22 -6.80 16 20 C -0.11 -4.31 7.81 31.12 0.24 -4.07 16 21 C -0.10 -4.79 7.23 31.12 0.22 -4.57 16 22 C -0.17 -5.98 10.33 66.86 0.69 -5.29 16 23 S 0.24 6.30 22.98 -56.49 -1.30 5.00 16 24 C -0.17 -5.24 6.46 22.94 0.15 -5.09 16 25 C -0.08 -1.90 9.71 22.48 0.22 -1.68 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 28 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 29 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.11 4.82 6.45 -2.91 -0.02 4.80 16 31 H 0.26 14.58 8.32 -92.71 -0.77 13.81 16 32 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.05 2.25 8.09 -2.38 -0.02 2.23 16 34 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.05 2.65 7.80 -2.39 -0.02 2.63 16 37 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.18 6.30 7.92 -2.91 -0.02 6.28 16 39 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -72.10 344.14 5.45 -66.65 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.06 Total: 16.14 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 3.66 Total: -34.91 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.27 Total: -50.95 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.28 Total: -49.39 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 6.30 SS G_CDS: -1.30 Total: 5.00 kcal Total: -72.10 5.45 -66.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856689.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.182 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds